MUG E.Coli

G/U Mismatch-Specific DNA Glycosylase E.Coli Recombinant
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Description

Biochemical Principle of MUG-Based Detection

Key Reaction:

MUGβ-glucuronidaseMU (fluorescent)+D-glucuronic acid\text{MUG} \xrightarrow{\beta\text{-glucuronidase}} \text{MU (fluorescent)} + \text{D-glucuronic acid}

Procedural Workflow for MUG Testing

MUG-based assays are integrated into standardized protocols for water, food, and clinical samples:

Media Composition

A typical MUG EC broth includes :

ComponentConcentration (g/L)Purpose
Casein enzymic hydrolysate20.0Nutrient source
Lactose5.0Fermentable carbohydrate
Bile salts1.5Inhibit Gram-positive bacteria
MUG0.05Fluorogenic substrate

Steps

  1. Inoculation: Transfer colonies or samples into MUG-containing broth or onto agar .

  2. Incubation: 24 hours at 35–37°C (water/food) or 44.5°C (fecal coliform confirmation) .

  3. Detection: Fluorescence under UV light indicates β-glucuronidase activity .

Water Quality Testing

  • Approved by the U.S. EPA for detecting fecal contamination in drinking water .

  • EC-MUG broth reduces false positives by combining fluorescence with gas production in Durham tubes .

  • Example: IDEXX’s Quanti-Tray system uses MUG to quantify E. coli MPN (most probable number) in 24 hours .

Clinical Diagnostics

  • Differentiates verotoxin-producing E. coli (e.g., O157:H7), which are typically MUG-negative .

  • A 20-minute rapid assay identifies 92.4% of E. coli strains in clinical isolates .

Sensitivity and Specificity

Study FocusKey ResultSource
Environmental water samples97% of E. coli strains were MUG-positive
Clinical isolates (O157:H7)100% of verotoxin-positive strains were MUG-negative
Food testingLST-MUG detected 25% more E. coli than standard MPN

Limitations

  • False negatives: 3% of E. coli lack β-glucuronidase .

  • Interference: Media dyes (e.g., EMB agar) obscure fluorescence .

  • Confirmation required: Biochemical or molecular tests are needed for definitive identification .

Emerging Trends and Innovations

  • Automated platforms: Fluoplate™2 software integrates fluorescence analysis with traceability reporting .

  • Combined assays: MUG-Indole tests reduce false positives by requiring concurrent indole production .

Product Specs

Introduction
As a member of the TDG/mug DNA glycosylase family, G/U mismatch-specific DNA glycosylase (mug) plays a crucial role in repairing DNA damage lesions within stationary-phase cells. This enzyme, Mug, effectively removes three N4-ethenocytosine and excises the uracil base from mismatches, prioritizing U:G over U:A. Following the action of Uracil-N-Glycosylase, which removes uracil from DNA leaving an AP site, Mug further hydrolyzes the carbon-nitrogen bond connecting the DNA's sugar-phosphate backbone and the mispaired base. Notably, the presence of guanine on the complementary strand contributes to substrate recognition.
Description
Recombinantly produced in E.coli, MUG is a single, non-glycosylated polypeptide chain consisting of 191 amino acids (1-168) and possessing a molecular mass of 21.1kDa. A 23 amino acid His-tag is fused to the N-terminus of MUG, which undergoes purification using proprietary chromatographic techniques.
Physical Appearance
A clear, sterile-filtered solution.
Formulation
The MUG solution (0.5mg/ml) is prepared with the following composition: 20mM Tris-HCl buffer (pH 8.0), 0.1M NaCl, and 20% glycerol.
Stability
For short-term storage (2-4 weeks), the product can be stored at 4°C. For extended storage, it is recommended to freeze the product at -20°C. The addition of a carrier protein (0.1% HSA or BSA) is advised for long-term storage. Avoid repeated freezing and thawing of the product.
Purity
The purity of this product exceeds 90% as assessed by SDS-PAGE.
Synonyms
xanthine DNA glycosylase, dug, ECK3058, JW3040, ygjF, G/U mismatch-specific DNA glycosylase, Double-strand-specific uracil glycosylase, Mismatch-specific uracil DNA-glycosylase, mug.
Source
E.coli.
Amino Acid Sequence
MGSSHHHHHH SSGLVPRGSH MGSMVEDILA PGLRVVFCGI NPGLSSAGTG FPFAHPANRF WKVIYQAGFT DRQLKPQEAQ HLLDYRCGVT KLVDRPTVQA NEVSKQELHA GGRKLIEKIE DYQPQALAIL GKQAYEQGFS QRGAQWGKQT LTIGSTQIWV LPNPSGLSRV SLEKLVEAYR ELDQALVVRG R.

Q&A

What is the biochemical basis for MUG-based detection of E. coli?

MUG-based detection relies on the enzymatic activity of β-glucuronidase (GUD), which is produced by approximately 97% of E. coli strains. This enzyme specifically cleaves the substrate 4-methylumbelliferyl-β-D-glucuronide (MUG) to yield a fluorescent end product that can be easily detected under UV light. The principle provides a highly specific marker for E. coli presence in various samples, as the β-glucuronidase enzyme is rarely found in other Enterobacteriaceae, with limited exceptions in some Salmonella and Shigella strains .

How does MUG-based detection compare to traditional E. coli identification methods?

MUG-based detection offers significant advantages over traditional methods:

  • Rapid detection: Results can be obtained within 24 hours, compared to 4-6 days for standard most-probable-number (MPN) methods

  • Higher sensitivity: LST-MUG testing detects a greater number of E. coli than standard procedures

  • Lower false-positive rate: Only 1.4% false-positives compared to higher rates with traditional methods

  • Detection of anaerogenic strains: MUG can identify E. coli strains that do not produce gas

  • Ability to detect damaged cells: Superior to violet red bile agar for detecting heat- and chlorine-injured E. coli cells

These advantages make MUG-based detection particularly valuable for time-sensitive research applications and when working with environmental or processed samples where E. coli may be stressed or injured.

What are the optimal parameters for MUG concentration, incubation temperature, and time in solid media applications?

The optimization of MUG assay parameters depends on the specific research application and required detection speed. Based on experimental evaluations:

ParameterStandard ConditionRapid DetectionRecommendation
MUG concentration50 μg/ml100 μg/ml50 μg/ml for standard 24h protocol; 100 μg/ml for protocols <24h
Incubation temperature37°C41.5°C37°C for standard 24h protocol; 41.5°C for protocols <24h
Incubation time24h8-12h24h provides optimal sensitivity; shorter times require higher temperature and MUG concentration
Media typeSelective media without differential substances-Recommended for optimal results

These parameters have been experimentally determined through testing of both naturally and artificially contaminated food samples. Using selective media without differential substances and an incubation time of 24 hours at 37°C with 50 μg/ml MUG concentration provides optimal sensitivity while minimizing reagent usage .

How can MUG be incorporated into broth-based detection systems?

For broth-based detection systems, MUG can be incorporated directly into lauryl tryptose broth (LST) at a final concentration of 100 μg/ml. This approach allows for simultaneous performance of the presumptive test (gas production) and the confirmed test (fluorescence) for E. coli after incubation for 24 hours at 35°C .

The incorporation of MUG into LST broth eliminates the need for the EC broth step in the traditional workflow, reducing the total detection time from 4-6 days to approximately 2.5 days for a completed E. coli test . This method is particularly effective for most-probable-number (MPN) determinations in food, water, and milk samples .

How can the MUG-Indole method improve detection accuracy and reduce false results?

The MUG-Indole method combines two biochemical tests in a single tube to enhance the specificity of E. coli detection. This approach leverages both the β-glucuronidase activity (detected by MUG) and the ability of E. coli to produce indole from tryptophan.

The MUG-Indole method has been demonstrated to effectively detect E. coli within 24 hours while reducing both false-positive and false-negative results to minimal acceptable limits (approximately 1% false-negative rate) . This dual-marker approach provides a more robust identification system, particularly important in pharmaceutical product testing where high accuracy is critical.

When discrepant results occur (positive with MUG but negative with Indole, or vice versa), additional IMViC tests (Indole, Methyl red, Voges-Proskauer, and Citrate utilization) should be performed to confirm identification . This integrated approach ensures maximum detection accuracy in research applications.

What strategies exist for rapid confirmation of E. coli in mixed microbial populations?

Several advanced strategies have been developed for rapid E. coli confirmation in complex samples:

  • Microtitration plate assay: A nonselective medium containing MUG can be used in microtitration plates to detect E. coli in pure or mixed cultures within 4-24 hours, with most strains showing positive results within 4 hours .

  • Membrane filter technique: MUG incorporated into membrane filter media allows visual distinction of E. coli colonies from other coliforms under UV illumination .

  • MUG incorporation into selective media: Adding MUG to violet red bile agar enables differentiation of E. coli from other coliforms directly on plating media .

These approaches are particularly valuable for environmental and food safety research where rapid identification of E. coli within complex microbial communities is necessary. The techniques allow researchers to detect as few as one viable E. coli cell within 20 hours, even in the presence of high numbers of competing bacteria .

How can MUG-based assays be applied to phytoremediation research for E. coli contaminated water?

MUG-based assays provide an efficient method for quantifying E. coli in water samples during phytoremediation research. In studies investigating plant-based water decontamination, researchers can use MUG testing to:

  • Quantify initial E. coli contamination levels in water samples

  • Track the reduction of E. coli over time as phytoremediation progresses

  • Compare efficacy of different plant species or treatment methods

  • Determine minimum treatment times required for complete decontamination

The methodology typically involves spreading contaminated water (often diluted using serial dilution) over agar plates containing MUG and allowing E. coli colonies to grow and develop fluorescence, enabling accurate enumeration . This approach has been successfully employed in research examining how aquatic plants can remediate E. coli contamination in water systems, providing a reliable quantification method that is both sensitive and specific.

What are the considerations for using MUG-based detection in research on environmental persistence of E. coli?

When investigating environmental persistence of E. coli using MUG-based detection methods, researchers should consider several important factors:

  • Sample preparation: Environmental samples may contain inhibitory substances that affect enzyme activity. Appropriate dilution and filtering protocols should be established.

  • Stressed organisms: Environmental E. coli may be stressed by conditions such as UV radiation, temperature fluctuations, or nutrient limitation, potentially affecting β-glucuronidase expression. MUG detection is superior to traditional methods for detecting heat- and chlorine-injured E. coli cells .

  • False positives: Some environmental Staphylococci produce β-glucuronidase and may cause false-positive results (reported rate: 1.4%) . Confirmatory testing protocols should be incorporated for ambiguous results.

  • Detection limits: The assay can detect a single viable E. coli cell within approximately 20 hours, making it suitable for studies requiring high sensitivity .

  • Incubation conditions: Environmental studies may benefit from evaluating multiple incubation temperatures to account for strain adaptation to environmental conditions.

These considerations enable researchers to accurately track E. coli persistence in environmental settings such as surface waters, soil, or biofilms, providing valuable data for public health and ecological research.

How does bacterial growth phase affect MUG-based E. coli detection?

The bacterial growth phase can significantly impact MUG-based detection of E. coli, primarily through its effects on β-glucuronidase expression levels. While not directly related to MUG detection, research on the E. coli DNA glycosylase Mug provides insight into how growth phase affects enzyme expression in E. coli generally:

  • Enzyme expression increases as cells enter stationary phase

  • Expression levels remain relatively high in resting cells

  • Expression patterns differ between rich and minimal media conditions

  • Regulation primarily occurs at the mRNA level

  • Expression is dependent on the stationary-phase sigma factor (σᵗ) to varying degrees depending on growth media

These patterns suggest that MUG-based detection may show different sensitivity depending on the growth phase of E. coli cells in the sample. For environmental or food samples where bacteria may be in stationary phase or under stress, this could actually improve detection as certain enzymes show increased expression under these conditions.

Researchers should consider validating MUG-based detection methods across different bacterial growth phases relevant to their specific research context to ensure consistent detection sensitivity.

What are the recommended quality control procedures for ensuring reliability of MUG-based E. coli detection?

Implementing rigorous quality control procedures is essential for reliable MUG-based E. coli detection in research settings. Recommended quality control measures include:

Reference Strains Testing:

  • Positive control: Escherichia coli ATCC 25922 (MUG positive, Indole positive)

  • Negative controls:

    • Klebsiella pneumoniae ATCC 27736 (MUG negative, Indole negative)

    • Proteus mirabilis ATCC 12453 (MUG negative, Indole negative)

Testing Frequency:

  • Control testing should be performed in accordance with established laboratory quality control procedures

  • New reagent lots should be verified with control strains before use in research applications

Acceptance Criteria:

  • Controls must produce expected results for the test to be considered valid

  • If aberrant quality control results are observed, experimental results should not be reported

Environmental Controls:

  • Maintain appropriate incubation temperature (±0.5°C of target)

  • Use certified UV light sources with appropriate wavelength for fluorescence detection

  • Implement regular cleaning protocols for equipment to prevent cross-contamination

These quality control measures ensure that variations in research results can be attributed to true experimental factors rather than methodological inconsistencies.

What are common sources of false positives and false negatives in MUG-based E. coli detection?

Understanding potential sources of false results is critical for accurate data interpretation in research settings:

Sources of False Positives:

  • β-glucuronidase-producing staphylococci (accounts for approximately 1.4% of false positives)

  • Some Salmonella and Shigella strains can produce β-glucuronidase

  • Contamination of work surfaces or equipment with active enzyme

  • Improper UV wavelength leading to misinterpretation of fluorescence

Sources of False Negatives:

  • Approximately 3% of E. coli strains do not produce β-glucuronidase

  • Inhibitory substances in complex samples may suppress enzyme activity

  • Insufficient incubation time for stressed or slow-growing E. coli strains

  • Improper MUG concentration or incubation conditions

  • Poor sample preparation techniques leading to inefficient bacterial recovery

Mitigation Strategies:

  • Implement the MUG-Indole dual-marker approach for critical applications

  • Use confirmatory IMViC tests when results are ambiguous

  • Optimize incubation conditions based on sample type and research objectives

  • Include appropriate positive and negative controls with each test batch

  • Consider parallel testing with alternative methods for critical applications

By understanding these potential sources of error and implementing appropriate mitigation strategies, researchers can maximize the reliability of MUG-based E. coli detection in their specific applications.

Product Science Overview

Introduction

G/U mismatch-specific DNA glycosylase, also known as MUG (Mismatch Uracil Glycosylase), is an enzyme found in Escherichia coli (E. coli) that plays a crucial role in the base excision repair (BER) pathway. This enzyme is responsible for identifying and excising uracil and ethenocytosine from DNA, which can arise due to deamination or alkylation of cytosine, respectively .

Structure and Function

The recombinant form of G/U mismatch-specific DNA glycosylase from E. coli is typically expressed in E. coli BL21 (DE3) cells. The enzyme consists of 168 amino acids and has a molecular weight of approximately 19 kDa . The crystal structure of this enzyme reveals a remarkable structural and functional homology to uracil DNA glycosylases (UDGs), despite low sequence identity .

The enzyme operates by hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of the DNA and the mispaired base. The complementary strand guanine plays a critical role in substrate recognition, ensuring that the enzyme specifically targets G:U and G:T mismatches .

Biological Significance

G/U mismatch-specific DNA glycosylase is essential for maintaining genomic integrity by repairing promutagenic lesions. These lesions, if left unrepaired, can lead to mutations and genomic instability. The enzyme is particularly important in stationary-phase cells, where DNA damage repair is crucial for cell survival .

Applications

Recombinant G/U mismatch-specific DNA glycosylase from E. coli is widely used in research and biotechnology. It is employed in immunization protocols to generate antibodies that specifically target the protein of interest. The enzyme’s high sensitivity, specificity, and reproducibility make it an ideal tool for various molecular biology applications .

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