NCDN Antibody, FITC conjugated

Shipped with Ice Packs
In Stock

Description

Overview of NCDN Antibody, FITC Conjugated

NCDN (Neurochondrin) is a calcium-binding protein implicated in cellular processes such as cytoskeletal organization and neurodevelopment. The NCDN antibody, FITC conjugated is a fluorescently labeled primary antibody designed to detect NCDN protein in immunofluorescence microscopy, flow cytometry, and other immunoassays. FITC (fluorescein isothiocyanate) is covalently attached to the antibody via primary amine groups, enabling visualization under blue light excitation (495 nm) with green emission (525 nm) .

Production and Conjugation Process

FITC conjugation involves crosslinking the antibody to the fluorophore using isothiocyanate (-N=C=S) chemistry, forming stable thiourea bonds. Key parameters include:

ParameterDetails
Antibody SourceRabbit polyclonal (e.g., US Biological, AstraMed)
Epitope TargetN-terminal region or AA 403–516 sequence
Conjugation EfficiencyOptimized for minimal antibody activity loss (1–3 FITC per antibody)
Buffer/StabilizersPBS with 0.01% sodium azide (preservative)

Critical Notes:

  • FITC reactivity with lysine residues may reduce antibody affinity if over-conjugated .

  • Sodium azide preserves antibody stability but is incompatible with peroxide-based detection systems .

Specificity and Epitope Recognition

The NCDN antibody binds to specific regions of the protein:

EpitopeSequenceReactivityApplications
N-terminalFirst 100–200 amino acids HumanImmunofluorescence (IF)
AA 403–516Internal region HumanELISA, Western blot (WB)

Validation:

  • Tested in immunofluorescence on fixed cells and Western blotting with recombinant NCDN .

  • Cross-reactivity with non-human species (e.g., guinea pig, bat) observed in some clones .

4.1. Primary Applications

MethodProtocolKey Use Cases
Immunofluorescence1:500 dilution in PBS/10% FBS, 1 hr incubation Localization of NCDN in neurons, cancer cells
Flow CytometryMultiparameter analysis with PE, PC5 dyes Quantifying NCDN expression in cell populations
Western BlotDetection after SDS-PAGE with HRP secondary Protein size confirmation (predicted ~60 kDa)

4.2. Research Insights

  1. FITC Labeling Trade-offs:

    • Sensitivity vs. Specificity: Higher FITC labeling (≥3 FITC/antibody) improves signal but risks reduced antigen binding affinity .

    • Multiplexing: Compatible with other fluorophores (e.g., PE, Cy5) for simultaneous detection of multiple targets .

  2. Cancer Research:

    • NCDN overexpression correlates with tumor progression in solid cancers, making it a potential biomarker .

    • FITC-conjugated antibodies enable precise tracking of NCDN in patient-derived xenograft (PDX) models .

Challenges and Considerations

  • Photobleaching: FITC’s susceptibility to light-induced degradation necessitates dark storage and rapid imaging .

  • Antibody Quality: Polyclonal antibodies may show batch-to-batch variability; validate with control proteins (e.g., recombinant NCDN) .

  • Cross-Reactivity: Confirm specificity in target vs. non-target cell lines to rule out non-NCDN interactions .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, we can ship your orders within 1-3 business days of receiving them. Delivery times may vary depending on the method of purchase and your location. Please contact your local distributor for specific delivery times.
Synonyms
NCDN antibody; KIAA0607 antibody; Neurochondrin antibody
Target Names
NCDN
Uniprot No.

Target Background

Function
Neurochondrin is likely involved in signal transduction within the nervous system, specifically by increasing the cell surface localization of metabotropic glutamate receptor 5 (GRM5) and positively regulating its signaling. It is essential for the spatial learning process. Neurochondrin acts as a negative regulator of Ca(2+)-calmodulin-dependent protein kinase 2 (CaMK2) phosphorylation. It may play a role in modulating melanin-concentrating hormone-mediated functions through its interaction with MCHR1, which interferes with G protein-coupled signal transduction. Additionally, neurochondrin may be involved in bone metabolism and neurite outgrowth.
Gene References Into Functions
  1. Studies comparing schizophrenia subjects to controls have revealed a significant increase in CA1 hippocampal Norbin and Tamalin proteins (47% and 34% respectively), which are endogenous regulators of mGluR5 signaling and trafficking. PMID: 26048293
  2. Research has demonstrated that neurochondrin exhibits strong isoform selectivity towards the RIIa subunit of PKA with nanomolar affinity. PMID: 25916936
  3. In silico screening for palmitoyl substrates indicates that DHHC1/3/10 (zDHHC1/3/11)-mediated neurochondrin palmitoylation plays a role in its targeting to Rab5-positive endosomes. PMID: 23687301
  4. In mouse models, the encoded protein serves as a negative regulator of Ca/calmodulin-dependent protein kinase II phosphorylation and is essential for the spatial learning process. PMID: 15790563
Database Links

HGNC: 17597

OMIM: 608458

KEGG: hsa:23154

STRING: 9606.ENSP00000348394

UniGene: Hs.121870

Protein Families
Neurochondrin family
Subcellular Location
Cytoplasm, cytosol. Endosome membrane; Lipid-anchor. Cell projection, dendrite. Cell junction, synapse, postsynapse.
Tissue Specificity
Abundantly expressed in whole adult brain and in all individual brain regions examined, including spinal cord. Weakly expressed in ovary, testis, fetal brain and small intestine.

Q&A

What is NCDN (Neurochondrin) and what is its relevance in research?

Neurochondrin (NCDN) is a protein that plays significant roles in neuronal function and is being increasingly studied in neuroscience research. This protein is expressed in various tissues but has particularly important functions in the nervous system. When studying NCDN, researchers often use specific antibodies that target different amino acid sequences of the protein, such as those that bind to the AA 403-516 region . These antibodies allow for the detection and visualization of NCDN in various experimental contexts, including cellular localization studies and protein expression analyses.

What does FITC conjugation mean in the context of antibodies?

FITC (Fluorescein Isothiocyanate) conjugation refers to the chemical process of attaching the fluorescent molecule FITC to an antibody. This conjugation occurs through the reaction between the isothiocyanate group of FITC and amino groups on the antibody molecule . The resulting FITC-conjugated antibody emits green fluorescence when excited with light of an appropriate wavelength, typically around 495 nm, with emission at approximately 520 nm. This fluorescent labeling enables researchers to visualize and quantify the target protein in techniques such as flow cytometry, immunofluorescence microscopy, and fluorescence-based immunoassays without the need for secondary detection reagents .

What are the recommended storage conditions for NCDN Antibody, FITC conjugated?

NCDN Antibodies that are FITC conjugated require specific storage conditions to maintain their stability and functionality. According to product information, these antibodies should never be frozen as freezing can compromise the fluorescent properties of FITC and potentially damage the antibody structure . The optimal storage temperature is typically 2-8°C (refrigerated), and the antibodies should be protected from light exposure to prevent photobleaching of the fluorescent dye . Some manufacturers recommend storing the antibody in small aliquots to minimize repeated freeze-thaw cycles if freezing is absolutely necessary, though the primary recommendation remains to avoid freezing altogether.

What are the common applications for NCDN Antibody, FITC conjugated?

NCDN Antibody, FITC conjugated can be utilized in multiple research applications:

  • Flow Cytometry: Particularly useful for detecting NCDN in single-cell suspensions, allowing for quantitative analysis of protein expression in different cell populations .

  • Immunofluorescence (IF): Enables visualization of NCDN localization within cells or tissues using fluorescence microscopy .

  • Fluorescence-based ELISA (FLISA): Can be used for quantitative detection of NCDN in solution samples with recommended dilutions of approximately 1:1000 .

  • Western Blotting: Though less common for direct fluorescent detection, FITC-conjugated antibodies can be used in Western blot applications with appropriate imaging systems, using dilutions typically between 1:100-500 .

  • Immunohistochemistry (IHC): Can be employed for detecting NCDN in tissue sections, particularly when fluorescence-based detection methods are preferred .

What dilutions are recommended for different applications of NCDN Antibody, FITC conjugated?

Based on manufacturer recommendations, the following dilutions are typically suggested for NCDN Antibody, FITC conjugated in various applications:

ApplicationRecommended DilutionNotes
FLISA1:1000Higher dilution possible due to sensitivity of fluorescence detection
Western Blot1:100-500Lower dilution range to ensure adequate signal
Flow CytometryTitration recommendedTypically starts at 1:50-1:200 range
Immunofluorescence1:100-500May require optimization based on sample type
Immunohistochemistry1:100-200Dependent on tissue fixation method

It's important to note that these are general guidelines, and optimal dilutions should be determined empirically for each experimental system and specific antibody lot .

How does the binding specificity to different NCDN regions affect experimental outcomes?

The binding specificity of NCDN antibodies to different regions of the protein can significantly impact experimental outcomes. For instance, antibodies targeting the AA 403-516 region of NCDN may yield different results compared to those targeting the N-terminal region . These differences arise because:

  • Epitope accessibility may vary depending on protein folding, post-translational modifications, or protein-protein interactions.

  • Some epitopes may be conserved across species while others are species-specific, affecting cross-reactivity profiles.

  • Certain domains of NCDN may be functionally significant, and antibodies binding to these regions could potentially interfere with protein function in functional assays.

  • Different regions may be differentially exposed during various experimental procedures (e.g., denaturation during Western blotting versus native conditions in flow cytometry).

Researchers should select antibodies targeting specific NCDN regions based on their experimental goals and validate that the chosen epitope is appropriate for the intended application and biological question .

What are the advantages and limitations of polyclonal versus monoclonal NCDN antibodies?

Both polyclonal and monoclonal NCDN antibodies have distinct characteristics that make them suitable for different research applications:

Polyclonal NCDN Antibodies:

Advantages:

  • Recognize multiple epitopes on the NCDN protein, potentially increasing signal strength

  • More tolerant to minor changes in the antigen (e.g., slight denaturation, polymorphisms)

  • Often work well across multiple applications (Western blot, IHC, IF, etc.)

  • Generally less expensive and faster to produce than monoclonals

Limitations:

  • Batch-to-batch variability may affect reproducibility

  • May exhibit higher background due to recognition of similar epitopes on other proteins

  • Less specific than monoclonal antibodies

Monoclonal NCDN Antibodies:

Advantages:

  • Consistent specificity with minimal batch-to-batch variation

  • Typically higher specificity for a single epitope

  • Better suited for distinguishing between closely related proteins

  • Excellent for quantitative applications requiring high reproducibility

Limitations:

  • May be more sensitive to changes in the epitope conformation

  • Sometimes less versatile across different applications

  • Generally more expensive and time-consuming to produce

The available NCDN antibodies conjugated to FITC include polyclonal options that target specific regions like AA 403-516, which offer good versatility across applications while maintaining reasonable specificity .

How can I optimize multi-color flow cytometry experiments using NCDN Antibody, FITC conjugated?

Optimizing multi-color flow cytometry experiments with NCDN Antibody, FITC conjugated requires careful consideration of several factors:

  • Panel Design:

    • Consider spectral overlap between FITC and other fluorochromes

    • Place FITC on abundant targets or pair with markers that have minimal overlap

    • When using FITC-conjugated antibodies, avoid PE-FITC tandems in the same panel due to significant spectral overlap

  • Compensation:

    • Prepare single-color controls with the same FITC-conjugated antibodies used in the experiment

    • Use appropriate negative controls to establish background fluorescence levels

    • Perform adequate compensation to correct for spectral overlap between FITC and other fluorochromes

  • Titration:

    • Determine the optimal concentration of NCDN Antibody, FITC conjugated by performing antibody titration

    • Plot signal-to-noise ratio against antibody concentration to identify the optimal dilution

  • Combined Markers Strategy:

    • Consider using approaches like the 4-colors method (CD4-FITC/CD8-PE/CD3-PC5/CD19-FITC) where multiple antibodies share the same fluorochrome channel if they target mutually exclusive cell populations

    • This approach can maximize the information obtained while reducing the number of fluorescence channels required

  • Gating Strategy:

    • Develop appropriate gating strategies that account for any potential overlap between FITC signals

    • Include FMO (Fluorescence Minus One) controls to set accurate gates

Research has demonstrated that carefully designed multi-color panels can yield accurate and reproducible results even when the same fluorochrome (like FITC) is used for different antibodies, provided the target proteins are expressed on different cell populations .

What are the potential cross-reactivity issues with NCDN antibodies?

Cross-reactivity is an important consideration when working with NCDN antibodies. Several factors can contribute to cross-reactivity issues:

  • Species Cross-Reactivity:

    • Most commercially available NCDN antibodies, including FITC-conjugated ones, are primarily reactive with human NCDN

    • Some antibodies may exhibit cross-reactivity with NCDN from other species, but this should be experimentally verified

    • When working with non-human samples, species-specific validation is essential

  • Structural Homology:

    • Proteins with structural similarities to portions of NCDN may be recognized by NCDN antibodies

    • This is particularly relevant for polyclonal antibodies that recognize multiple epitopes

  • Post-translational Modifications:

    • Modifications like phosphorylation, glycosylation, or proteolytic processing can alter epitope recognition

    • These modifications may vary across cell types or conditions, affecting antibody binding

  • Isoform Specificity:

    • NCDN may exist in different isoforms, and antibodies may not recognize all isoforms equally

    • Antibodies targeting specific amino acid sequences (e.g., AA 403-516) may not detect truncated variants

To address potential cross-reactivity issues:

  • Perform appropriate negative controls (including isotype controls)

  • Validate antibody specificity using known positive and negative samples

  • Consider using multiple antibodies targeting different epitopes for confirmation

  • Review literature for reported cross-reactivities with specific NCDN antibodies

What controls should I include when using NCDN Antibody, FITC conjugated?

Proper experimental controls are essential when working with NCDN Antibody, FITC conjugated:

Essential Controls:

  • Isotype Control:

    • Use a rabbit IgG-FITC with the same concentration as the NCDN antibody

    • Helps distinguish specific binding from Fc receptor binding or other non-specific interactions

  • Negative Control Samples:

    • Include samples known not to express NCDN

    • Helps establish background fluorescence levels

  • Positive Control Samples:

    • Use samples with confirmed NCDN expression

    • Serves as a reference for expected signal intensity and pattern

  • Unstained Controls:

    • Samples with no antibody added

    • Establishes baseline autofluorescence

  • Blocking Controls:

    • Pre-incubate with unlabeled NCDN antibody before adding FITC-conjugated antibody

    • Confirms specificity of binding

Additional Controls for Specific Applications:

ApplicationRecommended Additional Controls
Flow CytometryFMO (Fluorescence Minus One) controls, single-color compensation controls
ImmunofluorescenceSecondary antibody-only control, peptide competition control
FLISAStandard curve with recombinant NCDN protein
Western BlotMolecular weight marker, blocking peptide control

Including these controls helps ensure that the observed signals are specific to NCDN and not artifacts or non-specific binding events .

What is the protocol for conjugating FITC to antibodies in a laboratory setting?

The process of conjugating FITC to antibodies involves several critical steps. Here is a detailed protocol based on established methodologies:

Materials Required:

  • Purified monoclonal or polyclonal antibody (1-2 mg/ml)

  • FITC labeling buffer (0.05 M sodium carbonate, 0.15 M NaCl, pH 9.2)

  • 5 mg/ml FITC, isomer I, in anhydrous dimethyl sulfoxide (DMSO)

  • Final dialysis buffer (PBS with 0.1% sodium azide)

  • Dialysis tubing or cassettes

Protocol:

  • Antibody Preparation:

    • Dialyze purified antibody against 500 ml FITC labeling buffer at 4°C

    • Perform 2-3 buffer changes over 2 days, allowing ≥4 hours between changes

    • This step removes free NH4+ ions and raises pH to 9.2

  • Concentration Determination:

    • Measure antibody concentration using absorbance at 280 nm (A280)

  • FITC Conjugation:

    • Add 20 μl of 5 mg/ml FITC in DMSO for each milligram of antibody

    • Incubate for 2 hours at room temperature

    • Note: Both dye and organic solvent must be anhydrous; prepare FITC/DMSO solution immediately before use

  • Removal of Unbound FITC:

    • Remove unbound FITC by dialysis against 500 ml final dialysis buffer at 4°C

    • Perform 2-3 buffer changes over 2 days

  • Determination of F/P Ratio:

    • Calculate the fluorochrome/protein (F/P) ratio using the formula:
      F/P = 2.87 × A495 / (A280 - 0.35 × A495)

    • Optimal F/P ratios typically range from 3.0 to 8.0

This conjugation process creates stable FITC-labeled antibodies suitable for various fluorescence-based applications. The protocol may need optimization depending on the specific antibody characteristics and intended use .

How can I determine the optimal FITC to protein ratio for NCDN antibodies?

Determining the optimal fluorochrome-to-protein (F/P) ratio is crucial for ensuring maximum sensitivity while maintaining antibody functionality. Here's a methodological approach:

  • Measuring F/P Ratio:
    After conjugation, calculate the F/P ratio using spectrophotometric measurements:

    • Measure absorbance at 280 nm (A280) for protein concentration

    • Measure absorbance at 495 nm (A495) for FITC concentration

    • Calculate using the formula: F/P = 2.87 × A495 / (A280 - 0.35 × A495)

  • Optimal F/P Ratio Range:

    • For most applications, the ideal F/P ratio for FITC-conjugated antibodies ranges from 3.0 to 8.0

    • Ratios below 3.0 may result in insufficient fluorescence signal

    • Ratios above 8.0 may cause excess fluorescence quenching and potentially interfere with antibody binding

  • Testing Different F/P Ratios:
    Prepare antibodies with varying F/P ratios by adjusting:

    • FITC concentration during conjugation

    • Reaction time

    • Reaction pH (higher pH typically increases conjugation efficiency)

  • Performance Evaluation:
    Test each preparation using:

    • Flow cytometry to determine signal-to-noise ratio

    • Binding assays to ensure antigen recognition is maintained

    • Stability tests to assess fluorescence retention over time

  • Application-Specific Considerations:

    • Flow cytometry typically benefits from higher F/P ratios (5-8)

    • Immunofluorescence microscopy may require lower F/P ratios (3-5) to reduce background

For NCDN antibodies specifically, maintaining the appropriate F/P ratio is essential to ensure detection of this protein in various experimental contexts while preserving the antibody's specificity for the target epitope .

What troubleshooting approaches are recommended for experiments with NCDN Antibody, FITC conjugated?

When working with NCDN Antibody, FITC conjugated, researchers may encounter various technical issues. Here are systematic troubleshooting approaches for common problems:

1. Low or No Signal:

Possible CauseTroubleshooting Approach
Antibody degradationVerify storage conditions; avoid freezing FITC-conjugated antibodies
Insufficient antibody concentrationTry a lower dilution of the antibody
Epitope masking or destructionTest different sample preparation methods; consider antigen retrieval for fixed samples
PhotobleachingMinimize exposure to light; use anti-fade mounting media for microscopy
Low target expressionUse positive controls with known NCDN expression; consider signal amplification methods

2. High Background:

Possible CauseTroubleshooting Approach
Non-specific bindingInclude proper blocking steps; optimize antibody dilution
AutofluorescenceInclude unstained controls; use spectral unmixing if available
Excessive antibody concentrationPerform antibody titration to determine optimal concentration
Cross-reactivityUse more stringent washing conditions; verify antibody specificity
FITC fluorescence spilloverOptimize compensation in multi-color experiments

3. Inconsistent Results:

Possible CauseTroubleshooting Approach
Batch-to-batch variationUse the same lot number when possible; re-validate new lots
Variable sample preparationStandardize fixation and permeabilization protocols
Antibody instabilityPrepare fresh working dilutions; avoid repeated freeze-thaw cycles
Instrument variabilityInclude calibration beads; standardize instrument settings
Protocol inconsistenciesDocument protocols thoroughly; minimize procedural variations

4. Flow Cytometry-Specific Issues:

  • For compensation problems in multi-color panels where FITC is used alongside other fluorochromes, prepare single-color controls using the same cell type and antibody concentration

  • When using the same fluorochrome (FITC) for two different antibodies, ensure the target proteins are expressed on mutually exclusive cell populations

  • Validate gating strategies using FMO (Fluorescence Minus One) controls

5. Immunofluorescence-Specific Issues:

  • For high background in tissue sections, try longer washing steps or increase detergent concentration

  • If nuclear staining is desired, ensure proper permeabilization steps are included

  • For co-localization studies, capture single-channel images to verify absence of bleed-through

These troubleshooting approaches provide a systematic framework for addressing technical challenges with NCDN Antibody, FITC conjugated across various applications .

How can I validate the specificity of NCDN Antibody, FITC conjugated?

Validating antibody specificity is crucial for ensuring reliable research results. Here is a comprehensive approach to validating NCDN Antibody, FITC conjugated:

1. Genetic Approaches:

  • Use NCDN knockout or knockdown cells/tissues as negative controls

  • Compare signal in cells with known NCDN expression levels (e.g., overexpression systems)

  • If available, use RNA-seq or proteomics data to correlate antibody signal with NCDN expression levels

2. Biochemical Validation:

  • Perform peptide competition assays by pre-incubating the antibody with the immunizing peptide (e.g., recombinant NCDN protein 403-516AA)

  • Compare results with different antibodies targeting distinct NCDN epitopes

  • For Western blot applications, verify that the detected protein has the expected molecular weight

3. Immunological Methods:

  • Use isotype controls (rabbit IgG-FITC) at the same concentration as the NCDN antibody

  • Perform side-by-side comparisons with validated non-conjugated NCDN antibodies followed by FITC-conjugated secondary antibodies

  • Test cross-reactivity with related proteins if applicable

4. Application-Specific Validation:

ApplicationValidation Approach
Flow CytometryCompare with known NCDN expression patterns; use blocking antibodies
ImmunofluorescenceCo-localization with antibodies against known NCDN-interacting proteins
ELISA/FLISAStandard curve with recombinant NCDN; spike-and-recovery experiments
Western BlotMolecular weight verification; comparison with non-FITC conjugated antibodies

5. Documentation and Reporting:

  • Record detailed validation protocols

  • Document lot numbers and validation results

  • Consider following antibody validation guidelines from initiatives like the Antibody Validation Initiative

Thorough validation ensures that the signals observed with NCDN Antibody, FITC conjugated truly represent NCDN distribution and abundance, rather than artifacts or non-specific binding .

What are the best practices for designing multi-color panels that include NCDN Antibody, FITC conjugated?

Designing effective multi-color panels that include NCDN Antibody, FITC conjugated requires strategic planning to maximize information while minimizing spectral overlap. Here are best practices based on scientific evidence:

1. Fluorochrome Selection and Pairing:

  • FITC has an excitation maximum at ~495 nm and emission maximum at ~520 nm

  • Avoid fluorochromes with significant spectral overlap with FITC, particularly PE-FITC tandems

  • Consider the following pairing strategy for optimal separation:

FluorochromeExcitation/EmissionRecommended Pairing with FITC
PE565/578 nmGood separation, minimal compensation required
APC650/660 nmExcellent separation, minimal compensation
PC5 (PE-Cy5)490,565/670 nmFunctional pairing as demonstrated in research
Pacific Blue401/452 nmGood separation, higher-end instruments

2. Panel Design Strategies:

  • Place FITC on abundant targets or markers with clear positive/negative populations

  • Reserve brightest fluorochromes (not FITC) for low-expression targets

  • Consider innovative approaches like the 4-colors method that uses the same fluorochrome (FITC) for antibodies targeting mutually exclusive cell populations

3. Experimental Validation:

  • Perform single-color controls for each fluorochrome

  • Include FMO (Fluorescence Minus One) controls for accurate gating

  • Validate new panels with samples of known composition

4. Technical Considerations:

  • Ensure proper instrument setup and daily calibration

  • Perform thorough compensation using single-stained controls

  • Consider the use of spectral unmixing on newer cytometers

5. Data Analysis:

  • Develop a consistent gating strategy

  • Account for autofluorescence in the FITC channel

  • Consider computational approaches for complex panels

Research has demonstrated that well-designed panels like CD4-FITC/CD8-PE/CD3-PC5/CD19-FITC can effectively distinguish between different lymphocyte populations even when using the same fluorochrome (FITC) for two different markers (CD4 and CD19) that are expressed on different cell types .

How is NCDN Antibody, FITC conjugated used in neuroscience research?

NCDN Antibody, FITC conjugated has significant applications in neuroscience research due to the important roles of Neurochondrin in neuronal function. Key research applications include:

  • Neuronal Differentiation Studies:

    • NCDN antibodies can be used to track expression changes during neuronal differentiation

    • Flow cytometry with FITC-conjugated NCDN antibodies allows for quantitative assessment of NCDN expression in developing neurons

    • Time-course experiments can reveal temporal regulation of NCDN during neural development

  • Subcellular Localization:

    • Immunofluorescence microscopy using NCDN Antibody, FITC conjugated enables direct visualization of NCDN distribution within neurons

    • Co-localization studies with markers for different neuronal compartments can reveal where NCDN functions

    • High-resolution imaging techniques combined with FITC-labeled antibodies can provide detailed insights into NCDN dynamics

  • Synaptic Plasticity Research:

    • NCDN has been implicated in synaptic plasticity mechanisms

    • FITC-conjugated antibodies allow for the detection of NCDN in synaptic preparations

    • Changes in NCDN localization or expression during learning paradigms can be monitored

  • Neurodevelopmental Disorder Studies:

    • Alterations in NCDN expression or localization may be associated with neurodevelopmental conditions

    • Flow cytometry with NCDN Antibody, FITC conjugated enables high-throughput screening of patient-derived samples

    • Comparative analyses between control and disorder-specific samples can reveal pathological differences

  • Neural Circuit Mapping:

    • When combined with other neuronal markers, NCDN Antibody, FITC conjugated can contribute to the characterization of specific neural circuits

    • Multi-color flow cytometry approaches similar to the 4-colors method described for lymphocytes can be adapted for neuronal populations

These applications highlight the versatility of FITC-conjugated NCDN antibodies in advancing our understanding of neuronal function and development.

What are the comparative advantages of using FITC versus other fluorochromes for NCDN detection?

The choice of fluorochrome for antibody conjugation significantly impacts experimental outcomes. Here's a comparative analysis of FITC versus other common fluorochromes for NCDN detection:

FITC Characteristics:

  • Excitation maximum: ~495 nm

  • Emission maximum: ~520 nm

  • Quantum yield: Moderate (0.85)

  • Photostability: Moderate, susceptible to photobleaching

  • pH sensitivity: Significant (fluorescence decreases at lower pH)

Comparative Analysis:

FluorochromeAdvantages vs. FITCDisadvantages vs. FITCBest Applications
PE (Phycoerythrin)Brighter (~5-10x); better photostabilityLarger size may affect antibody binding; more expensiveLow abundance targets; flow cytometry
Alexa Fluor 488Better photostability; less pH-sensitiveMore expensive; similar spectral profile to FITCLong-term imaging; confocal microscopy
TRITCDifferent spectral profile for multiplexingLess bright than PE; moderate photostabilityMulti-color microscopy
APCSpectrally distinct; bright signalLarger size; more expensiveMulti-color flow cytometry

Decision Factors for Choosing FITC for NCDN Detection:

  • Instrumentation Compatibility:

    • FITC is compatible with virtually all flow cytometers and fluorescence microscopes

    • Standard FITC filter sets are universally available

  • Multi-color Experimental Design:

    • FITC works well in combination with PE and APC for 3-color experiments

    • The 4-colors method demonstrates FITC can be paired effectively with PE and PC5

  • Cost Considerations:

    • FITC conjugation is less expensive than many alternatives

    • FITC conjugation protocols are well-established and accessible

  • Application-Specific Considerations:

    • For flow cytometry of abundant targets: FITC is suitable

    • For imaging fixed specimens: Consider photobleaching limitations

    • For pH-sensitive environments: Consider pH-stable alternatives

  • Conjugation Chemistry:

    • FITC conjugation is straightforward and well-documented

    • The protocol yields consistent results with optimal F/P ratios between 3.0-8.0

The optimal choice depends on the specific research question, available instrumentation, target abundance, and experimental design requirements .

What methodological advances have improved the use of FITC-conjugated antibodies in research?

Recent methodological advances have significantly enhanced the utility and performance of FITC-conjugated antibodies, including those targeting NCDN:

1. Conjugation Chemistry Improvements:

  • Development of optimized buffer systems that enhance conjugation efficiency while preserving antibody activity

  • Introduction of site-specific conjugation methods that avoid disrupting the antigen-binding regions

  • Standardized protocols that produce consistent fluorochrome/protein (F/P) ratios between 3.0-8.0

2. Photobleaching Reduction Strategies:

  • Anti-fade mounting media formulations specifically optimized for FITC

  • Oxygen-scavenging systems that reduce photobleaching during prolonged imaging

  • Development of image acquisition protocols that minimize exposure times

3. Multi-color Panel Design Innovations:

  • Novel panel designs using the same fluorochrome (FITC) for antibodies targeting mutually exclusive cell populations

  • The 4-colors method (CD4-FITC/CD8-PE/CD3-PC5/CD19-FITC) demonstrates how FITC can be used twice in the same panel

  • This approach maximizes the information obtained while reducing the number of fluorescence channels required

4. Advanced Flow Cytometry Technologies:

  • Spectral flow cytometry that better resolves overlapping fluorochromes

  • Improved compensation algorithms that reduce spillover artifacts

  • High-dimensional analysis methods that extract more information from multi-color data

5. Imaging Advancements:

  • Super-resolution microscopy techniques compatible with FITC-conjugated antibodies

  • Automated high-content imaging systems that standardize image acquisition

  • Quantitative image analysis tools that provide consistent measurements

6. Sample Preparation Enhancements:

  • Optimized fixation and permeabilization protocols that preserve epitope accessibility

  • Antigen retrieval methods that enhance detection in fixed tissues

  • Blocking strategies that reduce non-specific binding

These methodological advances have collectively improved the sensitivity, specificity, and versatility of FITC-conjugated antibodies, making them more valuable tools for NCDN detection and characterization in various research contexts .

How can I integrate NCDN Antibody, FITC conjugated into high-dimensional cytometry experiments?

Integrating NCDN Antibody, FITC conjugated into high-dimensional cytometry experiments requires careful planning and optimization. Here's a comprehensive approach:

1. Panel Design Considerations:

  • Spectral Positioning:

    • Place FITC in a channel with minimal spillover from other fluorochromes

    • Use fluorochromes with minimal spectral overlap with FITC (e.g., APC, PE-Cy7)

    • Consider brightness matching where brighter fluorochromes are paired with less abundant targets

  • Novel Multiplexing Approaches:

    • Implement strategies like the 4-colors method where FITC is used for markers on mutually exclusive populations

    • This approach has been validated for lymphocyte subsets using CD4-FITC/CD8-PE/CD3-PC5/CD19-FITC

    • Similar approaches could be applied for NCDN detection alongside other markers

2. Controls for High-Dimensional Analysis:

Control TypePurposeImplementation
FMO ControlsSet accurate gates; identify spilloverOmit FITC-NCDN from full panel
Single-Color ControlsEstablish compensation matrixNCDN-FITC alone on positive cells
Biological ControlsValidate panel designKnown NCDN+ and NCDN- samples
Isotype ControlsAssess non-specific bindingRabbit IgG-FITC at matching concentration

3. Sample Preparation Optimization:

  • Standardize fixation and permeabilization protocols

  • Optimize staining conditions (temperature, time, buffer composition)

  • Consider sequential staining approaches if steric hindrance is a concern

4. Data Analysis Strategies:

  • Compensation:

    • Apply proper compensation using single-color controls

    • Verify compensation accuracy with visual inspection of biaxial plots

  • Dimensionality Reduction:

    • Use algorithms like tSNE, UMAP, or FlowSOM for visualization

    • Include NCDN expression as a parameter in clustering algorithms

  • Population Identification:

    • Apply manual gating guided by dimensionality reduction

    • Use computational tools to identify populations based on multiple markers

5. Validation Approaches:

  • Compare high-dimensional results with conventional analysis

  • Verify findings with orthogonal techniques (e.g., imaging)

  • Perform replicate experiments to ensure reproducibility

By following these guidelines, researchers can effectively integrate NCDN Antibody, FITC conjugated into high-dimensional cytometry experiments, enabling comprehensive analysis of NCDN expression in complex cellular systems .

What recent research has utilized NCDN Antibody, FITC conjugated for novel discoveries?

While the search results don't specifically detail recent studies using NCDN Antibody, FITC conjugated, we can extrapolate from methodological advances in antibody-based research to understand potential applications. Recent advances in flow cytometry and immunofluorescence techniques suggest several promising research directions:

  • Multi-parameter Analysis in Neurodevelopmental Research:

    • The 4-colors method demonstrated for lymphocyte analysis (CD4-FITC/CD8-PE/CD3-PC5/CD19-FITC) shows how FITC-conjugated antibodies can be effectively used in multi-parameter analysis

    • Similar approaches could be applied to study NCDN expression alongside other neuronal markers during development and in pathological conditions

  • High-throughput Screening Applications:

    • FITC-conjugated antibodies are compatible with high-throughput flow cytometry and imaging platforms

    • This enables screening of compounds that might affect NCDN expression or localization in neuronal populations

  • Methodological Innovations:

    • Protocols for FITC conjugation to antibodies have been refined to ensure optimal fluorochrome/protein ratios while maintaining antibody functionality

    • These methodological improvements facilitate more reliable detection of NCDN in various experimental contexts

  • Improved Multi-color Flow Cytometry:

    • Studies have demonstrated the value of innovative antibody-fluorochrome combinations that maximize information from limited fluorescence channels

    • The validation of approaches using the same fluorochrome (FITC) for antibodies targeting mutually exclusive populations opens new possibilities for complex experimental designs

  • Potential Clinical Applications:

    • Flow cytometry with fluorescently labeled antibodies has important clinical applications

    • While primarily demonstrated with lymphocyte markers, similar approaches could be developed for neurological biomarkers, potentially including NCDN

These developments highlight how FITC-conjugated antibodies continue to be valuable tools in biomedical research, with ongoing methodological improvements expanding their utility in complex experimental designs .

Quick Inquiry

Personal Email Detected
Please use an institutional or corporate email address for inquiries. Personal email accounts ( such as Gmail, Yahoo, and Outlook) are not accepted. *
© Copyright 2025 TheBiotek. All Rights Reserved.