NS Antibody, HRP conjugated

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Description

Composition and Mechanism

  • Antigen Target: The antibody binds to NS1, a critical non-structural protein expressed by certain viruses (e.g., influenza A or coronaviruses) during replication. NS1 plays a role in modulating host immune responses and viral RNA replication .

  • Conjugation: HRP (Horseradish Peroxidase), a 44 kDa glycoprotein, is covalently linked to the antibody via lysine residues. This conjugation enables enzymatic catalysis of chromogenic substrates (e.g., TMB or DAB), producing a colorimetric signal proportional to target protein concentration .

ParameterDetail
HostRabbit
ClonalityPolyclonal
ConjugateHRP
IsotypeIgG
ReactivityVirus (specific to NS1)
ApplicationsELISA

Production and Stability

The antibody is produced via immunization of rabbits with purified NS1 protein. Conjugation with HRP is achieved using optimized protocols such as Abcam’s Lightning-Link® HRP Conjugation Kit, which ensures high yield and minimal buffer interference . The final product is stabilized in 50% glycerol and 0.01M PBS (pH 7.4) with 0.03% Proclin 300 as a preservative. Storage at -20°C or -80°C is recommended to maintain activity .

ELISA

The NS Antibody, HRP conjugated, is used as a detection reagent in sandwich or indirect ELISA formats. For example:

  • Viral Load Monitoring: Quantifies NS1 levels in patient sera or cell lysates to assess viral replication dynamics .

  • Vaccine Development: Measures immune responses by detecting NS1-specific antibodies in vaccinated individuals .

Western Blotting and IHC

While primarily marketed for ELISA, HRP-conjugated antibodies like this are adaptable to other techniques. For instance, Abcam’s Lightning-Link® system enables rapid conjugation for western blotting or immunohistochemistry (IHC), allowing visualization of NS1 in infected tissues .

Research Findings and Implications

  • Viral Pathogenesis: NS1’s role in evading host immune responses has been studied extensively. HRP-conjugated antibodies enable precise quantification of NS1 in viral replication studies .

  • Diagnostic Sensitivity: The HRP-ELISA format offers advantages over fluorescent assays, including reduced background noise in complex samples like whole blood .

  • Therapeutic Monitoring: In COVID-19 research, longitudinal ELISA studies using HRP-conjugated antibodies revealed significant declines in antibody titers against viral antigens over time, highlighting the need for booster immunizations .

Comparison of Detection Methods

Assay TypeAdvantagesLimitations
ELISAHigh sensitivity, cost-effectiveSemi-quantitative, labor-intensive
Western BlotConfirmatory, protein size verificationLow throughput, technical complexity
IHCSpatial resolution, tissue localizationTime-consuming, requires specialized reagents

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, we can ship products within 1-3 business days of receiving your order. Delivery times may vary depending on the purchase method and location. Please consult your local distributor for specific delivery times.
Synonyms
NS antibody; Non-structural protein 1 antibody; NS1 antibody; NS1A antibody
Target Names
NS
Uniprot No.

Target Background

Function
This antibody inhibits the establishment of the cellular antiviral state by blocking TRIM25-mediated DDX58 ubiquitination. This process normally triggers the antiviral signaling pathway, leading to the activation of type I IFN genes through transcription factors IRF3 and IRF7. It also prevents human EIF2AK2/PKR activation, either by binding to double-strand RNA or by directly interacting with EIF2AK2/PKR. This function is crucial at the initial stages of infection when NS1 is primarily located in the cytoplasm. Additionally, it binds to poly(A) and U6 snRNA, inhibiting the post-transcriptional processing of cellular pre-mRNA. This inhibition occurs by targeting two cellular proteins essential for the 3'-end processing of cellular pre-mRNAs: the 30 kDa cleavage and polyadenylation specificity factor/CPSF4 and the poly(A)-binding protein 2/PABPN1. As a result, unprocessed 3' end pre-mRNAs accumulate in the host nucleus and are unable to be exported to the cytoplasm. This effectively shuts down cellular protein synthesis shortly after viral infection. Importantly, viral protein synthesis remains unaffected by this inhibition as the poly(A) tails of viral mRNAs are produced by the viral polymerase through a stuttering mechanism.
Protein Families
Influenza A viruses NS1 family
Subcellular Location
Host nucleus. Host cytoplasm.

Q&A

What are NS Antibody, HRP conjugates and how do they enhance detection methods?

NS Antibody, HRP conjugates combine the advantages of nanoparticle platforms with enzymatic signal amplification. These conjugates typically consist of nanoshells (NS) - nanoparticles composed of silica cores (approximately 120 nm) with gold shells (approximately 15 nm thick) - decorated with specific antibodies and horseradish peroxidase . The large surface area of nanoshells allows for significant antibody loading, while the HRP component (a 44 kDa glycoprotein with 6 lysine residues) enables sensitive colorimetric detection through various substrate reactions .

Research has demonstrated that antibodies conjugated to nanoshells can substantially enhance detection sensitivity. In studies with breast cancer cell lines expressing different levels of epidermal growth factor receptor (EGFR), nanoshell-conjugated antibodies increased signal intensity up to 13-fold compared to unconjugated antibodies . Additionally, approximately 40 times more unconjugated antibodies were required to achieve detection levels comparable to those obtained with antibody-nanoshell conjugates .

What are the primary applications for NS Antibody, HRP conjugates in laboratory settings?

NS Antibody, HRP conjugates have demonstrated utility across multiple molecular and cellular analysis techniques:

  • Enzyme-Linked Immunosorbent Assays (ELISA): NS-antibody conjugates can dramatically lower detection limits in traditional ELISA workflows, enabling identification of biomarkers present at extremely low concentrations .

  • Western Blotting: For protein detection on membranes, these conjugates provide enhanced sensitivity while maintaining specificity, as demonstrated in studies using HRP-conjugated anti-goat IgG secondary antibodies to detect various primary antibodies .

  • Immunohistochemistry (IHC): Both paraffin-embedded (IHC-P) and frozen sections (IHC-F) can be analyzed using these conjugates with appropriate dilution ranges .

  • Simple Western™ Analysis: Automated capillary-based western analyses benefit from the enhanced detection capabilities of NS Antibody, HRP conjugates, as observed in experiments detecting proteins like TC-PTP and Syntaxin 1A .

How should NS Antibody, HRP conjugates be stored to maintain optimal activity?

Proper storage is critical for maintaining the performance of NS Antibody, HRP conjugates. The following guidelines should be observed:

  • Temperature conditions: Store at 2-8°C for up to 6 months from the date of receipt .

  • Critical warning: Do not freeze these conjugates, as freezing can compromise both the nanoshell structure and HRP enzymatic activity .

  • Stability factors: Performance of HRP conjugates diminishes over time, with degradation accelerating with increasing temperature and dilution .

  • Buffer composition: Most commercial preparations are supplied in buffered solutions containing stabilizers like BSA, glycerol, and antimicrobial agents that extend shelf-life .

For optimal long-term storage, aliquoting the conjugate into multiple small volumes can prevent repeated freeze-thaw cycles that would otherwise accelerate activity loss .

What are the optimal dilution ranges for NS Antibody, HRP conjugates in different applications?

Appropriate dilution of NS Antibody, HRP conjugates is crucial for successful experiments. The optimal dilution varies based on the specific application:

ApplicationRecommended Dilution RangeNotes
Western Blotting1:300-1:5000Higher dilutions (1:1000) commonly used for standard detection
ELISA1:500-1:1000Lower dilutions provide stronger signal for low-abundance targets
IHC-Paraffin1:200-1:400Optimization needed for different tissue types
IHC-Frozen1:100-1:500Generally requires lower dilution than paraffin sections
Simple Western™1:50Automated systems typically require higher concentrations

It is strongly recommended that each laboratory determine the optimal dilution for their specific experimental conditions through titration experiments . Factors affecting optimal dilution include target abundance, primary antibody concentration, incubation conditions, and detection substrate sensitivity.

How can I troubleshoot weak signal intensity when using NS Antibody, HRP conjugates?

When experiencing suboptimal signal with NS Antibody, HRP conjugates, consider the following methodological approaches to troubleshooting:

Studies with EGFR detection in breast cancer cell lines demonstrated that optimizing these parameters could differentiate between cell lines with varying receptor expression levels, even when conventional methods failed to detect such differences .

What is the most effective protocol for conjugating antibodies to nanoshells?

Effective antibody-nanoshell conjugation requires careful control of surface chemistry. Based on current research protocols, the following method has proven effective:

  • Nanoshell preparation: Begin with nanoshells composed of silica cores (120 nm) and gold shells (15 nm), synthesized through established silica core generation followed by gold seed attachment and shell growth .

  • Surface activation: Clean nanoshells thoroughly and activate the gold surface through thiol chemistry, typically using self-assembled monolayers (SAMs) of long-chain thiolated compounds containing terminal carboxyl groups .

  • Carboxyl activation: Activate the carboxyl groups on the SAM using EDC (1-ethyl-3-(3-dimethylaminopropyl)carbodiimide) and NHS (N-hydroxysuccinimide) chemistry to create amine-reactive esters .

  • Antibody conjugation: Add purified antibodies (ideally in a buffer free of primary amines, thiols, and azide) to the activated nanoshells. The optimal antibody:nanoshell ratio must be determined empirically, but starting ratios of 500-1000 antibody molecules per nanoshell have shown good results .

  • Blocking unreacted sites: Block any remaining activated sites with ethanolamine or glycine to prevent nonspecific binding .

  • Purification: Remove unconjugated antibodies through centrifugation, with careful washing steps using PBS containing minimal detergent (0.01-0.05% Tween-20) .

This protocol has enabled researchers to generate nanoshell-antibody conjugates with consistent performance characteristics, maintaining both the specificity of the antibody and the advantageous optical properties of the nanoshells .

How do buffer components impact the conjugation and performance of NS Antibody, HRP conjugates?

Buffer composition significantly influences both the conjugation process and subsequent performance of NS Antibody, HRP conjugates. Researchers should consider the following buffer parameters:

Buffer ComponentRecommended LevelsImpact on Conjugation/Performance
pH6.5-8.5pH outside this range reduces conjugation efficiency and may denature antibodies
Glycerol<50%Higher concentrations impede access to reactive groups
BSA<0.1%Competes with antibodies for conjugation sites
Gelatin<0.1%Interferes with conjugation chemistry
Tris<50mMContains primary amines that compete with antibody conjugation
Sodium AzideNoneInhibits HRP activity even at low concentrations
Primary AminesNoneCompete with antibody lysine residues for conjugation sites
ThiolsNoneDisrupt gold-thiol bonds on nanoshell surfaces

Research has shown that antibodies in buffers containing interfering components yield conjugates with significantly lower activity. For optimal results, antibodies should be dialyzed against phosphate-buffered saline (PBS) without preservatives before conjugation .

What advantages do NS Antibody, HRP conjugates offer over fluorescence-based detection methods for challenging samples?

NS Antibody, HRP conjugates present several methodological advantages over fluorescence-based detection systems, particularly in challenging sample contexts:

  • Improved signal-to-noise in complex matrices: HRP-based detection systems overcome the substantial background fluorescence in whole blood and tissue samples that often leads to high false-negative and false-positive rates with fluorescent methods .

  • Enhanced stability: Unlike fluorophores that are susceptible to photobleaching, HRP conjugates maintain activity during extended imaging or analysis procedures. Gold nanoshells further enhance stability, allowing storage for long periods without aggregation .

  • Amplified detection sensitivity: Each HRP molecule can convert multiple substrate molecules, providing enzymatic amplification. Studies comparing equivalent concentrations of fluorescent antibodies versus NS Antibody, HRP conjugates demonstrated that the latter could detect proteins at concentrations 40-fold lower .

  • Versatile detection options: HRP substrates offer flexible visualization options including colorimetric (DAB, TMB), chemiluminescent, and fluorescent modalities, allowing the same conjugate to be used across multiple detection platforms .

  • Cost-effective analysis: HRP detection reagents are generally less expensive than specialized fluorophores, and the enhanced sensitivity of nanoshell platforms reduces the amount of primary antibody required, providing substantial cost savings for large-scale studies .

Research with breast cancer cell lines demonstrated that NS Antibody, HRP conjugates could reliably detect differences in EGFR expression between cell populations where fluorescence-based methods showed inconsistent results due to background interference .

How can NS Antibody, HRP conjugates be optimized for multiplex detection assays?

Multiplexed detection using NS Antibody, HRP conjugates requires careful experimental design to achieve specificity while maximizing sensitivity. The following approaches have proven effective:

  • Nanoshell size differentiation: Utilizing nanoshells of different diameters (e.g., 100 nm vs. 150 nm) conjugated to different antibodies allows for spatial separation of signals. Research has shown that larger nanoshells provide more surface area for antibody loading but may have different optical properties requiring assay optimization .

  • Sequential HRP substrate development: Different HRP substrates producing distinct colored products (DAB - brown, AEC - red, TMB - blue) can be applied sequentially with washing and blocking steps between applications. This approach requires careful control of development times to prevent signal saturation .

  • Antibody selection considerations: When designing multiplex assays, select primary antibodies raised in different host species to allow specific secondary antibody recognition. The complete secondary antibody profile must be validated to confirm minimal cross-reactivity .

  • Optimized blocking strategies: Multiplex assays typically require more stringent blocking to prevent nonspecific binding. Research indicates that sequential blocking with both protein-based blockers (BSA/casein) and polymer blockers improves multiplex specificity .

  • Data normalization methods: Include controls for each target to allow normalization across different detection sensitivities. Studies utilizing multiplex detection of signaling proteins demonstrated that proper normalization was essential for accurate quantification of relative expression levels .

These optimization strategies have enabled researchers to simultaneously detect multiple biomarkers in complex samples with sensitivity comparable to single-target assays, significantly increasing analytical throughput .

What novel detection platforms can leverage NS Antibody, HRP conjugates beyond traditional techniques?

NS Antibody, HRP conjugates are finding application in emerging analytical platforms that extend beyond conventional ELISA and immunoblotting:

  • Microfluidic immunoassay systems: Nanoshell-antibody conjugates with HRP detection have been integrated into microfluidic chips for rapid, low-volume biomarker analysis. The enhanced sensitivity allows detection in nanoliter sample volumes with reduced background interference from the microfluidic materials .

  • Paper-based analytical devices (PADs): The colorimetric nature of HRP detection makes these conjugates ideal for low-cost, point-of-care diagnostics on paper substrates. Research has shown that nanoshell enhancement of HRP signals can improve detection limits by 1-2 orders of magnitude compared to standard PAD assays .

  • Digital pathology applications: For automated tissue analysis, NS Antibody, HRP conjugates provide consistent staining intensity that facilitates computer vision algorithms for quantitative assessment of biomarker expression. Studies of cancer biomarkers demonstrated improved discrimination between expression levels compared to conventional IHC techniques .

  • Flow-based detection platforms: Beyond traditional flow cytometry, NS Antibody, HRP conjugates have been adapted for use in Simple Western™ automated capillary-based protein analysis systems. Research demonstrates successful detection of various proteins including TC-PTP and Syntaxin 1A using HRP-conjugated secondary antibodies at dilutions as low as 1:50 .

  • Multiplexed bead arrays: Coupling NS Antibody, HRP conjugates with spectrally distinct microbeads enables simultaneous analysis of multiple analytes in single samples. The enhanced sensitivity improves detection of low-abundance targets even in the presence of competing signals .

These emerging platforms leverage the combination of nanoshell signal enhancement and HRP enzymatic amplification to push detection limits beyond what is possible with either technology alone .

How can I assess the quality and functionality of NS Antibody, HRP conjugates before use in critical experiments?

Prior to using NS Antibody, HRP conjugates in valuable experiments, researchers should conduct quality control assessments:

  • Spectrophotometric analysis: Nanoshell-antibody conjugates exhibit characteristic absorption spectra. The peak absorbance (typically around 500-530 nm for HRP conjugates) should be measured and compared to manufacturer specifications or previous lots. Significant shifts may indicate aggregation or degradation .

  • Activity assay with model substrate: Dilute a small aliquot of the conjugate and add to TMB or ABTS substrate. Functional HRP should produce visible color development within 5-10 minutes. Compare the rate of color development to a known functional standard .

  • Dot blot functionality test: Spot serial dilutions of a known target antigen on nitrocellulose, then perform a simplified immunodetection protocol with the NS Antibody, HRP conjugate. This provides a rapid assessment of both sensitivity and specificity .

  • Non-specific binding evaluation: Test the conjugate against a null sample (cells or tissue known to lack the target). Significant signal indicates potential non-specific binding issues requiring additional blocking optimization .

  • Stability assessment under experimental conditions: Subject small aliquots to the experimental conditions (temperatures, buffers) they will experience during the planned protocol. Compare activity before and after to ensure stability .

Research has shown that these quality control measures can identify problematic conjugates before they compromise experimental results, saving valuable samples and research time .

What strategies can address non-specific binding when using NS Antibody, HRP conjugates?

Non-specific binding can significantly impact experimental results with NS Antibody, HRP conjugates. The following methodological approaches have proven effective in reducing this issue:

  • Optimized blocking protocols: Research indicates that a two-step blocking approach using 3-5% BSA or milk proteins for 1-2 hours followed by a commercial synthetic blocker can dramatically reduce non-specific binding. The synthetic blockers often contain proprietary polymers that cover hydrophobic surfaces nanoshells may otherwise adhere to .

  • Buffer additives to reduce non-specific interactions:

    • Add 0.1-0.5% Tween-20 or Triton X-100 to washing and incubation buffers

    • Include 150-300 mM NaCl to disrupt ionic interactions

    • For particularly challenging samples, add 0.1-1% of species-matched normal serum

  • Sample pre-treatment optimization: When analyzing complex samples like tissue sections or cell lysates, pre-treatment with hydrogen peroxide (0.3-3%) can quench endogenous peroxidase activity that would otherwise contribute to background signal. This step is particularly important for tissues rich in endogenous peroxidases like liver or kidney .

  • Negative control antibodies: Include isotype-matched control antibodies conjugated to nanoshells following the same protocol as your target-specific antibodies. These controls help distinguish between specific and non-specific signals .

  • Sequential dilution validation: Test the conjugate at multiple dilutions - specific binding should decrease proportionally with dilution, while non-specific binding often shows a threshold effect. This approach helps identify the optimal signal-to-noise ratio .

Studies with challenging samples like whole blood have demonstrated that combining these approaches can reduce non-specific background by over 90% while maintaining sensitivity to low-abundance targets .

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