OSB4 Antibody

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Description

Definition and Biological Context

The OSB4 protein is encoded by the gene At1g31010 in Arabidopsis thaliana and belongs to a family of four putative proteins (OSB1-OSB4) involved in mitochondrial and chloroplast DNA maintenance . These proteins share structural homology with prokaryotic single-stranded DNA binding proteins (SSBs) and contain organellar targeting sequences. OSB4 is predicted to localize to chloroplasts or mitochondria, though its exact function remains understudied .

ProteinGeneLocalizationFunction
OSB1At1g47720MitochondriamtDNA stoichiometry regulation
OSB2At4g20010ChloroplastChloroplast DNA maintenance
OSB3At5g44785Dual (mitochondria/chloroplast)Organellar DNA repair
OSB4At1g31010Predicted (chloroplast)Unknown (no experimental data)

Antibody Development and Availability

No commercial or research-grade antibodies specifically targeting OSB4 have been reported in the literature or product catalogs reviewed . The OSB family has been studied primarily through genetic and biochemical approaches, with antibodies developed for OSB1 and OSB2 to investigate their roles in organellar DNA dynamics . For example:

  • OSB1 antibodies (affinity-purified) were used to detect mitochondrial localization in Arabidopsis protoplasts .

  • OSB2 antibodies confirmed chloroplast localization and DNA binding activity .

The absence of OSB4-specific antibodies reflects its limited functional characterization compared to other family members.

Research Gaps and Future Directions

  • Lack of experimental data: Unlike OSB1-OSB3, OSB4 has not been studied using molecular or immunological tools .

  • Antibody development: A polyclonal or monoclonal antibody for OSB4 would enable subcellular localization studies and functional assays (e.g., DNA binding, protein interactions).

  • Phylogenetic analysis: Comparative studies across plant species could reveal conserved or divergent roles of OSB4 in organellar DNA biology.

Broader Context of Antigen-Antibody Interactions

Antibodies targeting surface antigens, such as those in bacterial outer membrane proteins (e.g., Salmonella OmpD), highlight the importance of epitope accessibility . Similarly, plant organellar proteins like OSB4 may present challenges for antibody binding due to their subcellular localization and membrane environment. Research on bacterial LPS O-antigens demonstrates how structural modifications can modulate antibody efficacy , a principle that may apply to plant protein-antibody interactions.

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
OSB4 antibody; At1g31010 antibody; F17F8.7 antibody; Protein OSB4 antibody; chloroplastic antibody; Organellar single-stranded DNA-binding protein 4 antibody
Target Names
OSB4
Uniprot No.

Target Background

Function
This antibody binds to single-stranded DNA.
Database Links

KEGG: ath:AT1G31010

STRING: 3702.AT1G31010.1

UniGene: At.40440

Subcellular Location
Plastid, chloroplast.

Q&A

What is OSBP and why are OSBP antibodies important in research?

OSBP (Oxysterol Binding Protein) is a cytosolic receptor that plays critical roles in cellular lipid metabolism, membrane organization, and signaling pathways. OSBP antibodies are essential research tools that enable detection, localization, and functional analysis of OSBP in various experimental systems. These antibodies allow researchers to investigate OSBP's roles in lipid transport, membrane contact sites, and cell signaling cascades .

OSBP antibodies are particularly valuable for studying:

  • Intracellular cholesterol and oxysterol transport mechanisms

  • Membrane contact site formation between organelles

  • Viral replication mechanisms that exploit OSBP

  • Lipid-associated disease mechanisms

The sensitivity and specificity of OSBP antibodies make them indispensable for exploring these complex biological processes through techniques such as Western blotting, immunoprecipitation, immunohistochemistry, and immunofluorescence microscopy .

What are the main types of OSBP antibodies available for research?

OSBP antibodies are available in several formats, each optimized for different experimental applications:

Antibody TypeHost SpeciesClonalityCommon ApplicationsSpecial Considerations
Anti-OSBPRabbitPolyclonalWB, IHC, IP, ICCBetter for detection of denatured proteins
Anti-OSBPMouseMonoclonalWB, FCM, IF, IHCHigher specificity for targeted epitopes
Anti-OSBP N-terminalRabbitPolyclonalWB, IPTargets N-terminal region of OSBP
Anti-OSBP middle regionRabbitPolyclonalWBTargets internal epitopes
Conjugated OSBP antibodiesVariousBothFCM, IFPre-conjugated with fluorophores or enzymes

Researchers should select antibodies based on:

  • The specific OSBP isoform or family member of interest

  • The experimental technique to be employed

  • The species of the sample being analyzed

  • Whether native or denatured protein detection is required

How should I optimize Western blotting protocols with OSBP antibodies?

When optimizing Western blotting for OSBP detection, researchers should consider several critical parameters:

Sample Preparation:

  • Lyse cells in buffers containing appropriate detergents (RIPA or NP-40)

  • Include protease inhibitors to prevent degradation

  • For membrane-associated OSBP, consider specialized membrane protein extraction methods

Electrophoresis and Transfer:

  • Use 8-10% SDS-PAGE gels as OSBP is a large protein (~89 kDa)

  • Transfer at lower voltage for longer periods (e.g., 30V overnight) to ensure complete transfer of larger proteins

  • Use PVDF membranes for better protein retention

Antibody Incubation:

  • Start with 1:1000 dilution for primary OSBP antibodies, then optimize

  • Extend primary antibody incubation to overnight at 4°C

  • Use 5% BSA rather than milk for blocking when phospho-specific detection is required

Detection and Validation:

  • Include positive controls (cell lines known to express OSBP)

  • Use knockout or knockdown samples as negative controls

  • Consider stripping and reprobing with antibodies targeting different OSBP epitopes for confirmation

What are the best practices for immunoprecipitation using OSBP antibodies?

Successful immunoprecipitation (IP) with OSBP antibodies requires attention to several key factors:

Pre-IP Considerations:

  • Select antibodies specifically validated for IP applications

  • Use affinity-purified antibodies for higher specificity

  • Consider the epitope accessibility in native protein conformation

Protocol Optimization:

  • Pre-clear lysates with protein A/G beads to reduce non-specific binding

  • Use gentle lysis buffers (150-300mM NaCl, 1% NP-40 or Triton X-100) to preserve protein-protein interactions

  • Optimize antibody concentration (typically 2-5μg per IP reaction)

  • Extend incubation time (4-16 hours at 4°C) to maximize antigen capture

Controls and Validation:

  • Always include a negative control using non-specific IgG of the same species

  • Perform reverse IP with antibodies against known OSBP-interacting proteins

  • Validate results with Western blotting using a different OSBP antibody

Co-IP Applications:

  • For studying OSBP-interacting proteins, crosslinking may help stabilize transient interactions

  • Consider proximity-dependent labeling methods (BioID, APEX) as complementary approaches

How can I optimize immunofluorescence protocols for OSBP subcellular localization studies?

OSBP localization studies require careful optimization of immunofluorescence protocols:

Fixation Methods:

  • For general OSBP detection, 4% paraformaldehyde (10-15 minutes) works well

  • For membrane-associated OSBP, a combination of paraformaldehyde and glutaraldehyde may preserve structure better

  • Avoid methanol fixation which can disrupt membrane structures where OSBP localizes

Permeabilization:

  • Use 0.1-0.2% Triton X-100 or 0.1% saponin for cytoplasmic access

  • For more delicate membrane structures, consider digitonin (25-50μg/ml)

Antibody Selection and Validation:

  • Choose antibodies specifically validated for immunofluorescence

  • Test multiple antibodies targeting different epitopes

  • Include peptide competition controls to confirm specificity

Co-localization Studies:

  • Use markers for Golgi (GM130), ER (Calnexin), or lipid droplets to study OSBP at membrane contact sites

  • Consider super-resolution microscopy techniques (STED, STORM) for detailed localization

  • Implement live-cell imaging with fluorescently-tagged OSBP to complement fixed-cell studies

How can OSBP antibodies be used to study viral infection mechanisms?

OSBP has emerged as a critical host factor exploited by various viruses during infection. Researchers can utilize OSBP antibodies to investigate these interactions:

Virus-OSBP Interaction Studies:

  • Immunoprecipitate OSBP during viral infection to identify viral proteins that interact with OSBP

  • Use proximity ligation assays (PLA) to confirm direct interactions between viral proteins and OSBP in situ

  • Perform time-course studies to track OSBP redistribution during viral replication

Replication Complex Analysis:

  • Use immunofluorescence to examine OSBP recruitment to viral replication organelles

  • Combine with electron microscopy to visualize OSBP at membrane rearrangements induced by viruses

  • Implement immunogold labeling to precisely locate OSBP within virus-induced structures

Functional Studies:

  • Complement antibody-based detection with OSBP inhibitors to confirm functional relevance

  • Use OSBP antibodies to validate OSBP knockdown/knockout effectiveness in viral infection models

  • Examine phosphorylation status of OSBP during infection using phospho-specific antibodies

This research area is particularly relevant for positive-strand RNA viruses (enteroviruses, hepatitis C virus) that reorganize host membranes for replication .

What are the methodological approaches for studying OSBP in lipid transport and metabolism?

OSBP antibodies facilitate research into lipid transport mechanisms through several approaches:

Lipid Binding Assays:

  • Immunoprecipitate OSBP and analyze bound lipids by mass spectrometry

  • Use antibodies to validate OSBP constructs for in vitro lipid transfer assays

  • Implement proximity labeling to identify lipids in the vicinity of OSBP

Membrane Contact Site Analysis:

  • Perform super-resolution microscopy with OSBP antibodies to visualize ER-Golgi contact sites

  • Use structured illumination microscopy (SIM) to examine OSBP distribution at membrane interfaces

  • Implement electron microscopy with immunogold labeling for nanoscale localization

Lipid Metabolism Studies:

  • Track OSBP localization changes in response to cholesterol loading/depletion

  • Correlate OSBP distribution with sterol sensor proteins

  • Use OSBP antibodies to validate genetic manipulation in metabolic studies

Method Integration:

  • Combine antibody-based detection with lipidomics approaches

  • Use antibodies for validation in CRISPR-based screens of lipid transport pathways

  • Implement optogenetic approaches with antibody validation to study acute OSBP relocalization

How can researchers distinguish between OSBP and OSBP-related proteins using antibodies?

The OSBP family includes OSBP and OSBP-related proteins (ORPs), which share structural homology but have distinct functions. Discriminating between these proteins requires careful antibody selection and validation:

Epitope Selection Strategies:

  • Target unique regions that differ between OSBP and ORPs

  • Use C-terminal directed antibodies, as this region shows greater sequence divergence

  • Consider generating isoform-specific monoclonal antibodies for highest specificity

Validation Approaches:

  • Perform Western blotting against recombinant OSBP and ORPs

  • Test antibodies on cells with CRISPR knockout of specific family members

  • Use peptide competition with unique and shared peptide sequences

Cross-Reactivity Analysis:

  • Create a cross-reactivity matrix testing each antibody against all family members

  • Use immunoprecipitation followed by mass spectrometry to identify all captured proteins

  • Implement immunodepletion studies to confirm specificity

Application-Specific Considerations:

  • For immunofluorescence, validate colocalization patterns with known markers specific to each family member

  • In tissue sections, compare staining patterns with in situ hybridization for each family member

  • Consider using antibody combinations to create "fingerprints" of expression

What are common pitfalls in OSBP antibody experiments and how can they be addressed?

Researchers frequently encounter challenges when working with OSBP antibodies. Here are common issues and their solutions:

Non-specific Binding:

  • Problem: Multiple bands on Western blots or diffuse staining in microscopy

  • Solutions:

    • Increase blocking time/concentration

    • Use alternative blocking agents (casein, fish gelatin)

    • Perform titration experiments to determine optimal antibody concentration

    • Pre-absorb antibodies with cell lysates from OSBP-knockout cells

Poor Signal Intensity:

  • Problem: Weak or undetectable signal despite proper technique

  • Solutions:

    • Use signal amplification methods (TSA for IHC/IF)

    • Optimize antigen retrieval methods for fixed tissues

    • Consider alternative epitope antibodies if conformational issues exist

    • Implement more sensitive detection systems (ECL-Plus, Odyssey)

Inconsistent Results:

  • Problem: Variable staining patterns between experiments

  • Solutions:

    • Standardize lysate preparation methods

    • Aliquot antibodies to avoid freeze-thaw cycles

    • Include internal controls in every experiment

    • Validate new antibody lots against previous standards

How should researchers validate the specificity of OSBP antibodies?

Rigorous validation is essential for reliable OSBP antibody research. A comprehensive validation strategy includes:

Genetic Approaches:

  • Test antibodies on samples from OSBP knockout/knockdown models

  • Use overexpression systems with tagged OSBP to confirm co-localization

  • Implement rescue experiments to verify specificity of observed phenotypes

Biochemical Validation:

  • Perform peptide competition assays with immunizing peptide

  • Use multiple antibodies targeting different epitopes

  • Implement immunoprecipitation followed by mass spectrometry

Cross-Platform Validation:

  • Correlate protein detection by Western blot with mRNA levels

  • Compare antibody staining patterns with fluorescently tagged OSBP

  • Validate subcellular localization against known OSBP distribution patterns

Documentation Requirements:

  • Record complete validation data for each application

  • Document lot-to-lot variation testing

  • Maintain detailed protocols of successful validation methods

What are the best approaches for quantifying OSBP levels in different experimental systems?

Accurate quantification of OSBP is crucial for comparative studies across experimental conditions:

Western Blot Quantification:

  • Use housekeeping proteins appropriate for the experimental condition

  • Implement standard curves with recombinant OSBP

  • Consider fluorescent secondary antibodies for broader linear range

  • Use digital image analysis software with background subtraction

Flow Cytometry Approaches:

  • Implement proper compensation when using multiple fluorophores

  • Use quantitative beads to establish standard curves

  • Include isotype controls to set proper gating strategies

  • Consider intracellular staining protocols optimized for lipid-associated proteins

Microscopy-Based Quantification:

  • Use consistent acquisition parameters between samples

  • Implement automated analysis to reduce bias

  • Consider z-stack acquisition for total cellular content

  • Use reference standards for fluorescence intensity calibration

Absolute Quantification:

  • Consider targeted mass spectrometry approaches with isotope-labeled standards

  • Implement ELISA-based quantification when applicable

  • Use recombinant protein standards for calibration curves

How do OSBP antibodies compare with 4-1BB antibodies in immunological research?

While OSBP and 4-1BB antibodies target different molecules with distinct functions, understanding their comparative applications provides valuable context for immunological researchers:

Target Biology Differences:

  • OSBP antibodies target lipid-binding proteins involved in cellular metabolism and membrane organization

  • 4-1BB antibodies target a costimulatory receptor (TNFRSF9/CD137) on immune cells that enhances T cell and NK cell responses

Research Application Comparison:

AspectOSBP Antibodies4-1BB Antibodies
Primary research focusLipid metabolism, membrane biologyImmune activation, cancer immunotherapy
Main cell types studiedEpithelial cells, hepatocytesT cells, NK cells, regulatory T cells
Therapeutic relevanceMetabolic disorders, viral infectionsCancer immunotherapy, autoimmunity
Functional applicationsDetection, localizationDetection and functional modulation (agonism)
In vivo applicationsLimitedExtensive (immunotherapy models)

Methodological Considerations:

  • 4-1BB antibodies often serve dual purposes as both detection reagents and functional modulators (agonists)

  • OSBP antibodies primarily serve as detection tools for studying endogenous processes

  • 4-1BB antibody research frequently involves complex in vivo models and clinical translation

  • OSBP antibody research typically focuses on cellular and molecular mechanisms

What methodological considerations apply when using 4-1BB agonist antibodies in research?

For researchers working with immune regulatory pathways, 4-1BB agonist antibodies present unique methodological considerations:

Functional vs. Detection Applications:

  • Unlike most OSBP antibodies, 4-1BB antibodies can actively modulate immune responses

  • Different clones may have varying degrees of agonistic activity

  • Isotype selection critically influences functional outcomes due to Fc receptor engagement

Experimental Design Considerations:

  • Include appropriate controls for distinguishing between detection and functional effects

  • Consider timing of administration in relation to immune activation status

  • Implement dose-response studies to determine optimal concentrations for desired effects

Technical Validation:

  • Validate both binding specificity and functional activity

  • Confirm correlation between receptor occupancy and functional outcomes

  • Implement complementary approaches (4-1BBL) to confirm target-specific effects

Translational Applications:

  • Consider species-specific differences in 4-1BB signaling when translating between models

  • Evaluate combination effects with other immunomodulatory agents

  • Implement biomarkers for monitoring target engagement and functional responses

How might emerging technologies enhance OSBP antibody research?

Technological advances continue to expand the capabilities of antibody-based research:

Single-Cell Applications:

  • Single-cell proteomics to analyze OSBP expression heterogeneity

  • Mass cytometry (CyTOF) with OSBP antibodies for multiparametric analysis

  • Spatial transcriptomics combined with OSBP immunodetection

Advanced Imaging Technologies:

  • Live-cell super-resolution microscopy to track OSBP dynamics

  • Lattice light-sheet microscopy for extended OSBP trafficking studies

  • Correlative light-electron microscopy for nanoscale contextualization

Molecular Engineering Approaches:

  • Nanobody development for improved access to sterically hindered epitopes

  • Proximity-dependent labeling (BioID, APEX) coupled with OSBP antibody validation

  • Split-protein complementation assays for studying OSBP interactions in living cells

AI-Enhanced Analysis:

  • Machine learning algorithms for automated quantification of OSBP localization

  • Deep learning for pattern recognition in complex OSBP distribution datasets

  • Predictive modeling of OSBP function based on localization patterns

What are promising research directions combining OSBP and 4-1BB antibody approaches?

While OSBP and 4-1BB pathways have traditionally been studied separately, emerging research suggests potential convergence in several areas:

Immunometabolism:

  • Investigating how lipid metabolism (OSBP pathway) influences T cell function (4-1BB pathway)

  • Exploring metabolic requirements for sustained 4-1BB signaling

  • Examining lipid raft composition effects on 4-1BB receptor clustering and signaling

Viral Immunology:

  • Studying how virus-induced alterations in OSBP function affect immune recognition

  • Investigating 4-1BB-mediated responses to viruses that manipulate OSBP

  • Developing combination approaches targeting both viral replication (via OSBP) and immune activation (via 4-1BB)

Cancer Microenvironment:

  • Exploring lipid metabolism alterations in tumors and effects on 4-1BB+ tumor-infiltrating lymphocytes

  • Investigating OSBP-dependent mechanisms of immunosuppression in the tumor microenvironment

  • Developing dual-targeting strategies addressing both metabolic and immune aspects of cancer

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