PAB6 Antibody

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Description

HER2/HER3 Proximity-Driven Signaling

PAb6 induces HER2-HER3 proximity, triggering PI3K/Akt signaling and proliferation in HER2-positive breast cancer cells (e.g., SK-BR-3, BT-474). This contrasts with monospecific antibodies like trastuzumab or pertuzumab, which inhibit signaling .

Key Findings

  • Proliferation Induction: PAb6 treatment increased proliferation in SK-BR-3 cells compared to control or monospecific antibody combinations .

  • Signaling Activation:

    • pAkt (S473): PAb6 elevated pAkt levels at 24 hours, correlating with pro-survival signaling .

    • pErk: Short-term (1-hour) pErk reduction was observed, but levels normalized by 24 hours .

Antibody Performance in Proliferation Assays

AntibodyCell LineEffect on ProliferationpAkt (24h)
PAb6SK-BR-3Increased proliferation
TAb6 (Trastuzumab+Ab6)SK-BR-3Increased proliferation
Ab6 (Monospecific)SK-BR-3Reduced proliferation
Pertuzumab+Ab6 (Combo)SK-BR-3Reduced proliferation

Data synthesized from comparative studies .

Internalization Kinetics

PAb6’s multivalent binding enhances HER3 internalization:

AntibodyEntry into Early EndosomesLysosomal Localization
Ab615–60 minutesWithin 60 minutes
Ab6tet<5 minutesRapid degradation
PAb6Persistent membrane retentionMinimal lysosomal uptake

Internalization rates inferred from fluorescence microscopy .

Advantages

  • Targeted Proximity: PAb6’s design forces HER2-HER3 interaction, bypassing ligand dependency .

  • Half-Life: In vivo half-lives (~215 hours) suggest prolonged exposure potential .

Limitations

  • Proliferation Risk: Induced PI3K/Akt signaling may counteract therapeutic goals in HER2+ cancers .

  • Expression Yields: Lower production yields (2.5 mg/L for PAb6 vs. 8 mg/L for TAb6) pose scalability challenges .

Research Gaps and Future Directions

  • Context-Dependent Efficacy: HER2/HER3 co-expression levels may influence PAb6’s pro-proliferative vs. inhibitory effects.

  • Combination Therapies: Pairing PAb6 with inhibitors of PI3K/Akt (e.g., GDC-0941) could mitigate proliferative signaling.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
PAB6 antibody; At3g16380 antibody; MYA6.18 antibody; T2O4.13Polyadenylate-binding protein 6 antibody; PABP-6 antibody; Poly(A)-binding protein 6 antibody
Target Names
PAB6
Uniprot No.

Target Background

Function
The PAB6 Antibody binds to the poly(A) tail of mRNA. It is believed to play a crucial role in mediating the various functions of the poly(A) tail in mRNA biogenesis, stability, and translation.
Database Links

KEGG: ath:AT3G16380

STRING: 3702.AT3G16380.1

UniGene: At.51274

Protein Families
Polyadenylate-binding protein type-1 family
Subcellular Location
Cytoplasm. Nucleus.
Tissue Specificity
Expressed at low levels in leaves and young seedlings.

Q&A

Here’s a structured FAQ collection for academic researchers studying the PAB6 antibody (referenced as PBD-C06 in literature), synthesized from peer-reviewed findings and technical reports:

What distinguishes PAB6’s mechanism of action from other anti-amyloid antibodies?

PAB6 targets pyroglutamate-3 Aβ (pGlu3-Aβ), a post-translationally modified Aβ species forming neurotoxic oligomers. Unlike pan-Aβ antibodies (e.g., aducanumab), PAB6 avoids binding unmodified Aβ monomers, preserving their physiological roles in synaptic regulation .
Methodological Insight:

  • Validate specificity using ELISA with synthetic pGlu3-Aβ(3–42) peptides and amyloid plaque homogenates.

  • Compare binding kinetics via surface plasmon resonance (SPR) against unmodified Aβ1–42 .

How should researchers design in vivo experiments to evaluate PAB6’s efficacy?

Experimental Design Table:

ParameterRecommendationRationale
ModelAPP/PS1 transgenic mice with confirmed pE3-Aβ deposits Recapitulates AD-like pathology
Dosing10 mg/kg weekly, intraperitoneal, ≥3 monthsMimics clinical trial pharmacokinetics
Outcome MeasuresOligomer clearance (immunohistochemistry), cognitive tests (Morris water maze)Links pathology to functional improvement

Include controls: IgG4 isotype (Fc-silenced) to isolate target-mediated effects .

What strategies mitigate immunogenicity risks in PAB6’s humanized framework?

PAB6’s de-immunization involved:

  • Hotspot removal: Seven immunogenic residues in the humanized variable region were substituted while preserving paratope structure .

  • Fc engineering: Retained FcγR binding for microglial phagocytosis but eliminated C1q binding to prevent complement activation .
    Validation:

  • Use T-cell epitope mapping (e.g., EpiMatrix) and measure anti-drug antibodies (ADA) in primate studies .

How do researchers resolve contradictions between in vitro and in vivo phagocytosis data?

Case Example:

  • In vitro assays show PAB6 enhances microglial uptake of pE3-Aβ fibrils .

  • In vivo, efficacy depends on blood-brain barrier penetration (~0.1% of serum levels) .
    Resolution Protocol:

  • Quantify brain antibody levels via mass spectrometry.

  • Use two-photon imaging to track real-time phagocytosis in live models.

  • Compare results across species (mice vs. non-human primates) .

What computational tools predict PAB6’s binding to mixed Aβ/pE3-Aβ aggregates?

Leverage molecular dynamics simulations:

  • Model the N-terminal pGlu3 protrusion using cryo-EM structures of Aβ fibrils .

  • Validate with competitive SPR against co-aggregated Aβ/pE3-Aβ(3–42) .

Data Contradiction Analysis

Conflict: PAB6 shows strong fibril binding in vitro but limited plaque clearance in vivo.
Resolution Framework:

FactorHypothesisTest
Target EngagementInsufficient brain bioavailabilityRadiolabeled antibody biodistribution
Off-target BindingSequestration by peripheral aggregatesMeasure CSF:serum antibody ratio
Microglial ActivationFcγR polymorphism-dependent responseUse CX3CR1-GFP reporter mice

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