PDLIM5 Antibody, HRP conjugated

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Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, we can ship your order within 1-3 business days of receipt. Delivery times may vary depending on the purchase method and location. For specific delivery time information, please contact your local distributor.
Synonyms
ENH antibody; ENH1 antibody; Enigma homolog antibody; Enigma like LIM domain protein antibody; Enigma like PDZ and LIM domains protein antibody; Enigma-like PDZ and LIM domains protein antibody; L 9 antibody; L9 antibody; LIM antibody; PDLI5_HUMAN antibody; PDLIM5 antibody; PDZ and LIM domain 5 antibody; PDZ and LIM domain protein 5 antibody
Target Names
PDLIM5
Uniprot No.

Target Background

Function
PDLIM5, a LIM domain-containing protein, is involved in diverse cellular processes. It is believed to play a crucial role in heart development by interacting with protein kinase C (PKC) at the Z-disk region, contributing to the regulation of cardiomyocyte expansion. Overexpression of PDLIM5 can lead to the development of heart hypertrophy. Additionally, PDLIM5 is involved in regulating dendritic spine morphogenesis in neurons, potentially limiting the postsynaptic growth of excitatory synapses.
Gene References Into Functions
  1. Research indicates that PDLIM5 is essential for proper kAE1 membrane residency, acting as a vital linker between kidneyAE1 and actin cytoskeleton-associated proteins in polarized cells. PMID: 28045035
  2. PDLIM5 promotes the development of papillary thyroid carcinoma by activating the Ras-ERK pathway. PMID: 29574154
  3. PDLIM5 expression is significantly upregulated during cardiomyogenesis, and novel stage-specific isoforms of PDLIM5 have been identified. PMID: 28139119
  4. Studies have revealed shared genetic variations in the PDLIM5 gene that influence the development of alcohol dependence, type 2 diabetes, and hypertension. PMID: 27693979
  5. Evidence suggests that genetic variants within the PDLIM5 gene, along with interactions between PDLIM5 and steroid use, can influence cancer development. PMID: 27350677
  6. The nonsynonymous rs7690296 polymorphism of PDLIM5 may play a significant role in the pathogenesis of both bipolar disorder and schizophrenia. PMID: 24064681
  7. Single nucleotide polymorphisms (SNPs) in PDLIM5 (rs17021918,T), SLC22A3 (rs9364554,C), and NKX3-1 (rs1512268,A) may not be associated with prostate cancer in Chinese men. PMID: 22741436
  8. The significant difference in PDLIM5 mRNA expression in the peripheral blood leukocytes of treatment-naive bipolar (BPD) patients compared to healthy controls suggests that PDLIM5 may serve as a potential biological marker for BPD. PMID: 23031404
  9. LIM domains possess a novel molecular function: the regulation of PKC activities in a PKC isoform-specific manner. PMID: 21266195
  10. Altered expression of LIM has been observed in brains and lymphoblastoid cells from patients with bipolar disorder. PMID: 14743183
  11. Studies confirm a decreased expression of LIM in lymphoblastoid cell lines from patients with bipolar I disorder and schizophrenia. PMID: 15362566
  12. Western blot analyses of muscle tissues indicate that ENH4 is exclusively found in skeletal muscle. There is a distinct distribution of ENH members between skeletal and cardiac muscles, which differs between human and mouse. PMID: 15555569
  13. Genetic association studies have revealed an association between single nucleotide polymorphism (SNP)1 (rs10008257) and bipolar disorder. PMID: 16044170
  14. ENH acts as a restraining factor for the oncogenic activity of inhibitor of DNA binding 2 proteins in neural tumors. PMID: 16549780
  15. Research suggests that lower expression levels of LIM mRNA in peripheral leukocytes are associated with depressive states, and their recovery after treatment may be an adaptive change induced by antidepressants. PMID: 16595163
  16. Higher expression levels of PDLIM5 mRNA in the peripheral leukocytes of medication-free schizophrenic patients may be a potential marker for this condition. PMID: 17287082
  17. Findings provide further evidence supporting PDLIM5 as a potential susceptible gene for schizophrenia. PMID: 18021463
  18. The PDLIM5 gene is associated with recurrent major depressive disorder. PMID: 18197271
  19. An association between three single nucleotide polymorphisms at the PDLIM5 gene and lithium prophylaxis was investigated in a Sardinian sample comprising 155 bipolar patients treated with lithium. PMID: 18456508
  20. PDLIM5 may have a minor effect on susceptibility to bipolar disorder in Caucasians. PMID: 18496208
  21. A study investigated the association between PDLIM5 single nucleotide polymorphisms and bipolar disorder in a case-control sample. PMID: 18496210
  22. Research suggests that PDLIM5 might play a role in susceptibility to bipolar disorder among the Chinese Han population. PMID: 19448850

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Database Links

HGNC: 17468

OMIM: 605904

KEGG: hsa:10611

STRING: 9606.ENSP00000321746

UniGene: Hs.480311

Subcellular Location
Cell junction, synapse, postsynaptic density. Cell junction, synapse, presynapse. Cell junction, synapse, postsynapse. Cytoplasm, cytosol.
Tissue Specificity
Heart and skeletal muscle specific. Expression is commonly increased in the brain of patients with bipolar disorder, schizophrenia, and major depression.

Q&A

What is PDLIM5 and why is it a significant research target?

PDLIM5 (PDZ and LIM domain 5), formerly known as enigma homolog (ENH), is a cytoplasmic protein containing a PDZ domain at the N-terminus and LIM domains at the C-terminus. Its significance as a research target stems from its:

  • Role as a scaffold protein that tethers protein kinases to the Z-disk in striated muscles

  • Function in cardiomyocyte expansion and restraining postsynaptic growth of excitatory synapses

  • Involvement in mood disorders, with expression upregulated in the postmortem brains of patients with bipolar disorder and downregulated in peripheral lymphocytes of patients with major depression

  • Multiple transcript variants resulting from alternative splicing, indicating complex regulatory mechanisms

The multifaceted functions of PDLIM5 make it an important target in both neurological and cardiovascular research domains.

What are the key technical specifications of available PDLIM5 antibodies?

Several PDLIM5 antibodies with different specifications are available for research applications:

Antibody TypeCatalog NumberHost/IsotypeApplicationsReactivityMolecular Weight
Polyclonal, unconjugated10530-1-APRabbit/IgGWB (1:500-1:2000), IHC (1:50-1:500), IF, IP, ELISAHuman, mouse63-68 kDa observed, 64 kDa calculated
Polyclonal, HRP conjugatedQA61845Rabbit/IgGELISAHumanNot specified
Monoclonal, HRP conjugatedTA504449BMMouse/IgG2aFC (1:100), WB (1:2000)Human, mouse, ratNot specified

When selecting the appropriate antibody, researchers should consider the specific application, target species, and conjugation requirements of their experimental design.

How should PDLIM5 antibodies be stored and handled to maintain optimal activity?

Proper storage and handling are crucial for maintaining antibody functionality:

  • Store PDLIM5 antibodies at -20°C for long-term preservation

  • The polyclonal antibody (10530-1-AP) is stable for one year after shipment when stored at -20°C, and aliquoting is unnecessary for this storage temperature

  • The HRP-conjugated polyclonal antibody (QA61845) should be stored at -20°C or -80°C, with repeated freeze-thaw cycles being avoided to prevent degradation of activity

  • Buffer compositions typically include:

    • PBS with 0.02% sodium azide and 50% glycerol at pH 7.3 for unconjugated antibodies

    • 50% Glycerol, 0.01M PBS at pH 7.4 with 0.03% Proclin 300 as preservative for HRP-conjugated antibodies

For optimal results, always equilibrate antibodies to room temperature before opening, and quickly return them to proper storage conditions after use.

What are the recommended experimental conditions for Western blot detection of PDLIM5?

For optimal Western blot detection of PDLIM5:

  • Sample preparation:

    • Extract protein from cell or tissue samples using appropriate lysis buffer (Laemmli buffer has been successfully used in published studies)

    • Determine total protein concentration using a spectrophotometer

  • Recommended protocol:

    • Load 2-25 μg of total protein per lane

    • Run samples on a polyacrylamide gel suitable for 63-68 kDa protein separation

    • Transfer to PVDF membrane

    • Block with 3% nonfat dry milk in TBST

    • For unconjugated antibodies (10530-1-AP): Dilute 1:500-1:2000 in blocking buffer

    • For HRP-conjugated monoclonal antibody (TA504449BM): Dilute 1:2000

    • For unconjugated antibodies, use appropriate secondary antibody (e.g., HRP-conjugated anti-rabbit IgG at 1:10,000 dilution)

    • Detect using chemiluminescent substrate

    • Exposure time of approximately 10 seconds has been successful

Positive controls include HeLa cells, A549 cells, HUVEC cells, and NIH/3T3 cells, which have demonstrated detectable PDLIM5 expression .

How can PDLIM5 antibodies be optimized for detecting specific isoforms in neuropsychiatric research?

The PDLIM5 gene generates multiple splice variants, making isoform-specific detection crucial, particularly in neuropsychiatric research:

  • Isoform characterization:

    • PDLIM5 has several isoforms including ENH1 and ENH2

    • The gene-trapped ES cell line used in PDLIM5 research generated a fusion between PDZ and β-geo gene products containing 1-368 amino acids of ENH1 isoform and 1-306 amino acids of ENH2 isoform

  • Optimization strategies:

    • Perform Western blot analysis with appropriate molecular weight markers to distinguish isoforms (ENH1 and ENH2 have different molecular weights)

    • Use isoform-specific antibodies if available, or design experiments with antibodies targeting common regions

    • Include positive controls with known isoform expression patterns

    • Consider using RT-PCR to validate isoform expression at the mRNA level before protein analysis

  • Neuropsychiatric applications:

    • Research has shown that PDLIM5 expression is altered in mood disorders, making it important to detect specific isoforms

    • Studies report that chronic methamphetamine treatment increases PDLIM5 mRNA levels in the prefrontal cortex, while chronic haloperidol treatment decreases these levels

    • Imipramine increases PDLIM5 mRNA levels in the hippocampus

Careful optimization of antibody dilution, incubation conditions, and detection methods is essential for reliable isoform discrimination.

What are the best methodological approaches for using PDLIM5 antibodies in co-immunoprecipitation studies?

For successful co-immunoprecipitation (co-IP) studies with PDLIM5 antibodies:

  • Antibody selection:

    • Use the polyclonal antibody (10530-1-AP) which has been validated for immunoprecipitation applications

    • The recommended amount is 0.5-4.0 μg for 1.0-3.0 mg of total protein lysate

  • Protocol optimization:

    • Extract protein under non-denaturing conditions to preserve protein-protein interactions

    • Pre-clear lysates with protein A/G beads to reduce non-specific binding

    • Incubate with antibody overnight at 4°C for optimal antigen binding

    • Consider using a crosslinking approach to covalently attach the antibody to beads, reducing antibody contamination in the final sample

    • Include appropriate negative controls (non-specific IgG from the same species)

  • Interaction analysis:

    • PDLIM5 functions as a scaffold protein that interacts with protein kinases

    • The PDZ domain at the N-terminus and LIM domains at the C-terminus mediate different protein-protein interactions

    • Co-IP can help identify novel PDLIM5 binding partners in different cellular contexts

A549 cells have been successfully used for PDLIM5 immunoprecipitation studies and can serve as a positive control system .

How can researchers reconcile contradictory results in PDLIM5 expression studies across different tissues and disease models?

Contradictory results in PDLIM5 expression studies may be due to several factors:

  • Methodological considerations:

    • Antibody specificity: Ensure antibodies detect the correct isoforms across different tissues

    • Sample preparation: Different extraction methods may yield varying results

    • Normalization strategies: Use appropriate housekeeping genes or proteins for each tissue type

    • Detection methodologies: Western blot, immunohistochemistry, and flow cytometry have different sensitivities

  • Biological variables:

    • Tissue-specific expression patterns: PDLIM5 expression varies naturally between tissues

    • Disease state variations:

      • Upregulated in postmortem brains of patients with bipolar disorder

      • Downregulated in peripheral lymphocytes of patients with major depression

    • Treatment effects:

      • Chronic methamphetamine treatment increases PDLIM5 mRNA in the prefrontal cortex

      • Chronic haloperidol treatment decreases PDLIM5 mRNA in the prefrontal cortex

      • Imipramine increases PDLIM5 mRNA in the hippocampus

  • Reconciliation approach:

    • Perform parallel analyses using multiple detection methods

    • Include appropriate positive and negative controls for each tissue type

    • Consider using genetic models with altered PDLIM5 expression (e.g., heterozygous knockout mice) to validate antibody specificity

    • Document all experimental conditions thoroughly to enable accurate comparison across studies

Researchers should also consider that PDLIM5 heterozygous knockout mice show behavioral differences compared to wild-type mice, including reduced methamphetamine-induced locomotor hyperactivity and increased immobility time in forced swimming tests .

What are the optimal immunohistochemistry protocols for PDLIM5 detection in different tissue types?

For optimal immunohistochemistry (IHC) detection of PDLIM5:

  • Tissue preparation and antigen retrieval:

    • Fix tissue samples appropriately (typically 10% neutral buffered formalin)

    • For PDLIM5 detection, antigen retrieval methods have been optimized:

      • Primary recommendation: TE buffer at pH 9.0

      • Alternative method: Citrate buffer at pH 6.0

    • Complete antigen retrieval before blocking and antibody incubation

  • Antibody selection and dilution:

    • Use polyclonal antibody (10530-1-AP) at dilutions of 1:50-1:500 for IHC applications

    • Optimize dilutions empirically for each tissue type

    • Include positive control tissues: human stomach cancer tissue has shown positive PDLIM5 detection

  • Tissue-specific considerations:

    • Neuronal tissues: PDLIM5 is implicated in mood disorders, making brain tissue analysis particularly relevant

    • Cardiac tissues: Given PDLIM5's role in cardiomyocyte expansion, specialized protocols may be needed

    • Protocol optimization should be performed for each tissue type

  • Signal detection and analysis:

    • Use appropriate detection systems based on primary antibody host species

    • Include negative controls (primary antibody omission and isotype controls)

    • Quantify staining using appropriate image analysis software

    • Document magnification and exposure settings for reproducibility

Researchers should validate their IHC protocol by comparing results with other detection methods such as Western blotting or fluorescence microscopy when possible.

How can flow cytometry protocols be optimized for PDLIM5 detection in heterogeneous cell populations?

For optimizing flow cytometry detection of PDLIM5:

  • Cell preparation:

    • Harvest cells using methods that preserve cell surface and intracellular protein integrity

    • Fixation and permeabilization are crucial for detecting PDLIM5, as it is a cytoplasmic protein

    • Use fixation buffers containing formaldehyde (2-4%) followed by permeabilization with saponin or Triton X-100

  • Antibody selection and staining:

    • Use the HRP-conjugated monoclonal antibody (TA504449BM) at a 1:100 dilution for flow cytometry applications

    • If using unconjugated primary antibodies, select fluorophore-conjugated secondary antibodies with appropriate excitation/emission profiles for your cytometer

    • Include compensation controls when using multiple fluorophores

    • Add blocking steps (using serum from the same species as the secondary antibody) to reduce non-specific binding

  • Gating strategies for heterogeneous populations:

    • Use forward and side scatter to eliminate debris and select viable cells

    • Include lineage markers to identify specific cell subpopulations

    • Consider using markers for subcellular compartments to verify PDLIM5 localization

    • Develop hierarchical gating strategies to analyze PDLIM5 expression in different cell types within a mixed population

  • Controls and validation:

    • Include negative controls (unstained cells, isotype controls)

    • Use positive controls (cell lines with known PDLIM5 expression such as HeLa, A549, HUVEC, or NIH/3T3 cells)

    • Validate flow cytometry results with other methods like Western blotting or immunofluorescence

    • Consider using PDLIM5 knockdown or overexpression systems as additional controls

This approach enables quantitative analysis of PDLIM5 expression across different cell types within complex tissue-derived samples.

How can PDLIM5 antibodies be utilized in neuroscience research related to mood disorders?

Given the established connection between PDLIM5 and mood disorders, researchers can utilize these antibodies in several ways:

  • Expression analysis in mood disorder models:

    • Compare PDLIM5 protein levels in postmortem brain tissues from patients with bipolar disorder, major depression, and healthy controls

    • Analyze PDLIM5 expression in peripheral lymphocytes as a potential biomarker for major depression

    • Investigate regional brain expression patterns using immunohistochemistry with the polyclonal antibody (10530-1-AP) at 1:50-1:500 dilution

  • Drug response studies:

    • Monitor PDLIM5 expression changes in response to mood-stabilizing medications

    • Research has shown that:

      • Chronic methamphetamine treatment increases PDLIM5 mRNA in the prefrontal cortex

      • Chronic haloperidol treatment decreases PDLIM5 mRNA in the prefrontal cortex

      • Imipramine increases PDLIM5 mRNA in the hippocampus

    • Use Western blot with the PDLIM5 antibody to correlate mRNA changes with protein expression

  • Behavioral models:

    • Studies in Pdlim5 heterozygous knockout mice revealed:

      • Reduced effects of methamphetamine on locomotor hyperactivity and prepulse inhibition

      • Increased immobility time in forced swimming tests, which was diminished after chronic imipramine administration

    • Researchers can use PDLIM5 antibodies to correlate behavioral outcomes with protein expression in specific brain regions

  • Mechanistic investigations:

    • Use co-immunoprecipitation with PDLIM5 antibodies to identify interaction partners in neuronal tissues

    • Investigate the role of PDLIM5 in signaling pathways relevant to mood regulation

These approaches can provide valuable insights into the molecular mechanisms underlying mood disorders and potentially identify new therapeutic targets.

What experimental controls are essential when evaluating PDLIM5 expression across different experimental conditions?

Robust experimental design requires appropriate controls:

  • Technical controls:

    • Loading controls: Use housekeeping proteins like beta-actin for Western blot normalization

    • Antibody specificity controls:

      • Include PDLIM5 knockout or knockdown samples when possible

      • Use multiple antibodies targeting different epitopes to confirm specificity

    • Quantification controls: Include standard curves when performing quantitative analyses

  • Biological controls:

    • Positive expression controls: Use cell lines with confirmed PDLIM5 expression (HeLa, A549, HUVEC, NIH/3T3 cells)

    • Negative expression controls: Use tissues or cell lines with minimal PDLIM5 expression

    • Treatment response controls: Include established treatments with known effects on PDLIM5 expression (e.g., methamphetamine, haloperidol, imipramine)

  • Experimental condition controls:

    • Time course experiments: Collect samples at multiple time points to differentiate transient from sustained expression changes

    • Dose-response experiments: Use multiple concentrations of treatments to identify threshold effects

    • Environmental variables: Control for factors like circadian rhythms, stress, and age that might affect PDLIM5 expression

  • Validation across methodologies:

    • Compare protein detection methods (Western blot, IHC, flow cytometry) to confirm expression patterns

    • Correlate protein expression with mRNA levels using RT-PCR or RNA-seq

By implementing these controls, researchers can ensure that observed changes in PDLIM5 expression are specific, reproducible, and biologically relevant.

How can researchers effectively design experiments to study PDLIM5's role in cardiac function?

To investigate PDLIM5's role in cardiac function:

  • Model systems selection:

    • Primary cardiomyocytes: Isolate from different species to study species-specific functions

    • Cardiac cell lines: Use established lines like H9c2 or HL-1 for initial screening

    • Animal models: Consider normal and disease models (e.g., heart failure, hypertrophy)

    • Human samples: Obtain from healthy donors and patients with cardiac pathologies

  • Expression analysis methodology:

    • Use Western blot with PDLIM5 antibody (10530-1-AP) at 1:500-1:2000 dilution to quantify protein levels

    • Perform immunohistochemistry on cardiac tissue sections to analyze spatial distribution using 1:50-1:500 dilution

    • Employ immunofluorescence to co-localize PDLIM5 with structural proteins like α-actinin

  • Functional studies:

    • Modulate PDLIM5 expression using:

      • siRNA or shRNA knockdown

      • CRISPR/Cas9 gene editing

      • Overexpression systems

    • Assess functional outcomes:

      • Cardiomyocyte contractility

      • Calcium handling

      • Electrophysiological properties

      • Response to stress (mechanical, oxidative, ischemic)

  • Protein interaction studies:

    • Use co-immunoprecipitation with PDLIM5 antibody (0.5-4.0 μg for 1.0-3.0 mg of total protein lysate) to identify cardiac-specific binding partners

    • Investigate interactions with protein kinases, which PDLIM5 is known to tether as a scaffold protein

    • Perform proximity ligation assays to confirm interactions in situ

  • Developmental studies:

    • Analyze PDLIM5 expression during cardiac development

    • Investigate its role in cardiomyocyte expansion and differentiation

These approaches will help elucidate PDLIM5's role in normal cardiac physiology and potential contributions to pathological conditions.

What methodological approaches can resolve contradictory data on PDLIM5 function in different cellular contexts?

To resolve contradictory findings on PDLIM5 function:

  • Systematic methodological evaluation:

    • Standardize experimental protocols across different cellular contexts

    • Use the same antibody lots and dilutions when comparing different systems

    • Implement similar protein extraction, detection, and quantification methods

    • For Western blot applications, use 1:500-1:2000 dilution of polyclonal antibody (10530-1-AP)

    • For immunoprecipitation, use 0.5-4.0 μg antibody for 1.0-3.0 mg of total protein lysate

  • Isoform-specific analysis:

    • Determine which PDLIM5 isoforms are expressed in each cellular context

    • Design experiments to detect specific isoforms when possible

    • Consider that different isoforms may have distinct functions

  • Interaction partner profiling:

    • Identify PDLIM5 binding partners in each cellular context using co-immunoprecipitation

    • Compare interaction networks to explain functional differences

    • Investigate whether different protein kinases interact with PDLIM5 across cell types

  • Multi-omics integration:

    • Correlate protein expression data with transcriptomic, epigenomic, and proteomic datasets

    • Analyze post-translational modifications that might alter PDLIM5 function

    • Consider subcellular localization differences that might explain functional variation

  • Tissue-specific knockout models:

    • Generate conditional knockout models to study tissue-specific functions

    • Compare phenotypes across different tissue-specific knockouts

    • Note that homozygous knockout of Pdlim5 is embryonic lethal, indicating its essential role

By implementing these approaches, researchers can develop a more nuanced understanding of PDLIM5's context-dependent functions and resolve apparent contradictions in the literature.

What are the most common technical challenges when working with PDLIM5 antibodies and how can they be overcome?

Researchers commonly encounter these challenges with PDLIM5 antibodies:

  • Specificity issues:

    • Challenge: Cross-reactivity with related PDZ/LIM family proteins

    • Solution:

      • Validate antibody specificity using PDLIM5 knockdown or knockout samples

      • Use multiple antibodies targeting different epitopes

      • Include appropriate negative controls in all experiments

  • Detection sensitivity:

    • Challenge: Low signal-to-noise ratio, especially in tissues with low PDLIM5 expression

    • Solution:

      • Optimize protein extraction using buffers that effectively solubilize PDLIM5

      • Increase protein loading (up to 25 μg per lane has been successful)

      • For Western blot, optimize blocking conditions (3% nonfat dry milk in TBST has worked well)

      • Consider signal amplification methods like TSA (tyramide signal amplification)

  • Isoform discrimination:

    • Challenge: Detecting specific PDLIM5 isoforms from alternative splicing

    • Solution:

      • Use antibodies targeting isoform-specific regions when available

      • Employ high-resolution gel systems to separate closely sized isoforms

      • Complement protein studies with RT-PCR to identify expressed isoform mRNAs

  • Reproducibility issues:

    • Challenge: Variability in results across experiments

    • Solution:

      • Standardize all experimental conditions (antibody dilutions, incubation times, etc.)

      • Use consistent sample preparation methods

      • Include internal reference standards in each experiment

      • Store antibodies properly at -20°C and avoid repeated freeze-thaw cycles

  • Background in immunohistochemistry:

    • Challenge: High background staining in tissue sections

    • Solution:

      • Optimize antigen retrieval (TE buffer at pH 9.0 or citrate buffer at pH 6.0)

      • Titrate antibody concentration (1:50-1:500 for IHC applications)

      • Increase blocking time and concentration

      • Consider using biotin/avidin blocking when using biotinylated detection systems

These technical strategies can help overcome common challenges and improve experimental outcomes when working with PDLIM5 antibodies.

How can researchers effectively combine PDLIM5 antibody-based detection with other molecular techniques for comprehensive functional studies?

Integrating multiple methodologies enhances PDLIM5 research:

  • PDLIM5 antibodies with genetic manipulation:

    • Combine antibody detection with CRISPR/Cas9 gene editing, siRNA knockdown, or overexpression systems

    • Design experiment:

      • Manipulate PDLIM5 expression

      • Confirm expression changes via Western blot (1:500-1:2000 dilution)

      • Assess functional outcomes

      • Example: Pdlim5 heterozygous knockout mice showed altered responses to methamphetamine and increased immobility in forced swimming tests

  • Protein-protein interaction studies:

    • Combine co-immunoprecipitation (using 0.5-4.0 μg antibody for 1.0-3.0 mg lysate) with:

      • Mass spectrometry to identify novel binding partners

      • Proximity ligation assay to confirm interactions in situ

      • FRET/BRET analysis for dynamic interaction studies

      • Yeast two-hybrid screening to map interaction domains

  • Spatial and temporal expression analysis:

    • Integrate immunofluorescence with:

      • Live cell imaging to track PDLIM5 dynamics

      • Super-resolution microscopy for detailed localization

      • FRAP (fluorescence recovery after photobleaching) to assess protein mobility

      • Correlative light and electron microscopy for ultrastructural context

  • Multi-omics integration:

    • Correlate antibody-based protein detection with:

      • RNA-seq for transcriptome analysis

      • ChIP-seq to identify transcriptional regulators of PDLIM5

      • Phosphoproteomics to study post-translational modifications

      • Single-cell analysis to assess cell-to-cell variation

  • Functional assays:

    • Combine protein detection with:

      • Calcium imaging in cardiomyocytes or neurons

      • Electrophysiology to assess effects on cellular excitability

      • Cell migration and proliferation assays

      • In vivo behavioral testing in animal models

These integrated approaches provide comprehensive insights into PDLIM5 function across different biological contexts and disease states.

What novel applications of PDLIM5 antibodies are emerging in current research beyond traditional detection methods?

Emerging applications of PDLIM5 antibodies include:

  • Therapeutic target validation:

    • Using antibodies to validate PDLIM5 as a potential therapeutic target for mood disorders

    • Applications include:

      • Screening compounds that modify PDLIM5 expression or function

      • Evaluating effects of existing psychiatric medications on PDLIM5 levels

      • Developing antibody-based tools to modulate PDLIM5 interactions

  • Biomarker development:

    • Using PDLIM5 antibodies to develop diagnostic or prognostic biomarkers for:

      • Mood disorders (building on findings of altered expression in bipolar disorder and depression)

      • Cardiac pathologies (leveraging PDLIM5's role in cardiomyocyte function)

    • Applications include:

      • Immunoassay development for clinical samples

      • Tissue microarray analysis of patient cohorts

      • Multiplexed detection with other disease markers

  • Single-cell analysis:

    • Adapting flow cytometry protocols (using 1:100 dilution of HRP-conjugated monoclonal antibody) for:

      • CyTOF (mass cytometry) to analyze PDLIM5 in complex cell populations

      • Single-cell proteomics to correlate PDLIM5 with other proteins at individual cell level

      • Imaging flow cytometry to simultaneously quantify expression and localization

  • Proximity-based applications:

    • Using PDLIM5 antibodies for:

      • BioID or APEX2 proximity labeling to map local protein environment

      • Optogenetic applications where antibody-based targeting directs optogenetic tools

      • Targeted protein degradation systems like PROTACs or dTAGs

  • In vivo imaging:

    • Developing techniques for:

      • Intravital microscopy with fluorescently labeled PDLIM5 antibodies

      • PET imaging with radiolabeled antibodies or fragments

      • Photoacoustic imaging for deeper tissue visualization

These innovative applications extend beyond traditional detection methods and open new avenues for understanding PDLIM5 biology and its implications in disease.

What emerging technologies might enhance PDLIM5 detection and functional characterization in the next five years?

Several emerging technologies promise to revolutionize PDLIM5 research:

  • Advanced microscopy:

    • Lattice light-sheet microscopy for long-term imaging of PDLIM5 dynamics in living cells

    • Expansion microscopy to visualize PDLIM5 interactions at nanoscale resolution

    • Cryo-electron tomography to study PDLIM5 in its native cellular environment

    • These approaches will provide unprecedented insights into PDLIM5's spatial organization and dynamic behaviors

  • Proteomics innovations:

    • Targeted proteomics using mass spectrometry for absolute quantification of PDLIM5 isoforms

    • Cross-linking mass spectrometry to map PDLIM5 interaction interfaces at amino acid resolution

    • Top-down proteomics to characterize full-length PDLIM5 and its post-translational modifications

    • These methods will enable more precise characterization of PDLIM5 proteoforms

  • Spatial multi-omics:

    • Spatial transcriptomics combined with PDLIM5 immunofluorescence

    • Imaging mass cytometry for multiplexed protein detection in tissue sections

    • Digital spatial profiling to correlate PDLIM5 with dozens of other proteins in situ

    • These technologies will reveal tissue microenvironment influences on PDLIM5 function

  • Engineered antibody technologies:

    • Nanobodies with enhanced tissue penetration for in vivo applications

    • Bispecific antibodies targeting PDLIM5 and interacting partners

    • Antibody fragments optimized for super-resolution microscopy

    • These tools will enable more specific and versatile targeting of PDLIM5

  • AI-assisted analysis:

    • Machine learning algorithms for automated quantification of PDLIM5 staining patterns

    • Predictive modeling of PDLIM5 interactions based on structural data

    • Network analysis to integrate PDLIM5 into cellular pathway maps

    • These computational approaches will extract deeper insights from complex datasets

These technologies will collectively enhance our ability to detect, quantify, and functionally characterize PDLIM5 across different biological contexts.

How might PDLIM5 research contribute to personalized medicine approaches for mood disorders?

PDLIM5 research shows promising connections to personalized approaches for mood disorders:

  • Biomarker development:

    • PDLIM5 expression patterns differ between bipolar disorder and major depression

    • Potential applications:

      • Using PDLIM5 antibodies to develop diagnostic tests distinguishing between mood disorders

      • Monitoring PDLIM5 levels during treatment to predict response

      • Stratifying patients based on PDLIM5 expression patterns for clinical trials

  • Pharmacogenomic approaches:

    • Research shows differential effects of psychiatric medications on PDLIM5 expression:

      • Chronic methamphetamine treatment increases PDLIM5 mRNA in the prefrontal cortex

      • Chronic haloperidol treatment decreases PDLIM5 mRNA in the prefrontal cortex

      • Imipramine increases PDLIM5 mRNA in the hippocampus

    • This suggests that:

      • PDLIM5 genetic variants might predict medication response

      • Monitoring PDLIM5 protein levels could guide medication selection

      • PDLIM5-specific therapeutics might be developed for targeted treatment

  • Integrative diagnostic approaches:

    • Combining PDLIM5 antibody-based assays with:

      • Genetic testing for PDLIM5 polymorphisms associated with mood disorders

      • Neuroimaging to correlate PDLIM5 expression with brain structure/function

      • Behavioral assessments to link molecular markers with clinical presentation

  • Therapeutic targeting:

    • PDLIM5's role as a scaffold protein makes it a candidate for developing:

      • Small molecules disrupting specific protein-protein interactions

      • Peptide mimetics targeting PDLIM5 binding domains

      • RNA therapeutics modulating PDLIM5 expression

  • Longitudinal monitoring:

    • Using PDLIM5 antibodies to develop minimally invasive tests for:

      • Tracking disease progression

      • Monitoring treatment efficacy

      • Predicting relapse risk

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