The Phospho-ERBB2 (Y1139) Recombinant Monoclonal Antibody is a specialized research tool designed for the detection and analysis of ERBB2 (also known as HER2) protein phosphorylated at the Y1139 site. ERBB2 is a receptor tyrosine kinase that plays a critical role in cell signaling pathways associated with cell proliferation and survival . This antibody, raised in rabbits, demonstrates high specificity and reactivity with human samples, making it an invaluable tool for researchers studying ERBB2-mediated signaling pathways.
Phosphorylation of ERBB2 at specific tyrosine residues is a crucial post-translational modification that activates signaling pathways involved in cell growth, proliferation, and differentiation. Dysregulation of ERBB2 phosphorylation is implicated in cancer development and progression, making it a significant target for research in oncology and drug development . The specific antibody targeting the Y1139 phosphorylation site enables precise investigation of this particular modification and its downstream effects.
The Phospho-ERBB2 (Y1139) Recombinant Monoclonal Antibody is synthetically generated through an advanced in vitro process that ensures consistency and specificity. The production methodology involves several sophisticated steps that differentiate it from traditional hybridoma-based antibody production:
The process begins with the extraction of ERBB2 antibody genes from B cells isolated from immunoreactive rabbits. These genes are then amplified and cloned into suitable phage vectors, which are subsequently introduced into mammalian cell lines to enable the production of functional antibodies in substantial quantities . Following this initial production phase, the phospho-ERBB2 (Y1139) recombinant monoclonal antibody is purified from the culture supernatant of the transfected cell lines through affinity chromatography .
This recombinant approach offers significant advantages, including consistent lot-to-lot performance, reduced batch variation, and elimination of animal-derived contaminants. The antibody belongs to the IgG isotype, which provides excellent stability and versatility for various research applications .
The antibody is generated using a synthetic phosphorylated peptide around Y1139 of human ERBB2 (P04626) as the immunogen . This specific approach ensures high selectivity for the phosphorylated form of ERBB2 at the Y1139 position, minimizing cross-reactivity with non-phosphorylated ERBB2 or other phosphorylated proteins. The precise sequence used for immunization is "PEYV N," which corresponds to the region surrounding the Y1139 phosphorylation site .
The Phospho-ERBB2 (Y1139) Recombinant Monoclonal Antibody has been validated for multiple research applications:
Western Blot (WB): The antibody performs exceptionally well in Western blot applications, with recommended dilutions ranging from 1:100 to 1:500 . This technique allows researchers to detect and quantify the presence of phosphorylated ERBB2 in cell lysates and tissue samples.
Enzyme-Linked Immunosorbent Assay (ELISA): The antibody is suitable for ELISA applications, enabling quantitative analysis of phosphorylated ERBB2 levels in various samples .
Immunohistochemistry (IHC): With recommended dilutions of 1:50 to 1:200, the antibody can be used to visualize the distribution and localization of phosphorylated ERBB2 in tissue sections .
Immunofluorescence (IF): The antibody is effective for immunofluorescence studies, with recommended dilutions of 1:50 to 1:200, allowing for fluorescence-based detection and subcellular localization studies .
These diverse applications make the Phospho-ERBB2 (Y1139) Recombinant Monoclonal Antibody a versatile tool for researchers investigating ERBB2 signaling in various experimental contexts.
The antibody has been instrumental in elucidating the cellular localization of phosphorylated ERBB2. Research has shown that phosphorylated ERBB2 can be detected in multiple cellular compartments, including the cell membrane, cytoplasm, nucleus, and perinuclear regions . This distribution pattern provides important insights into the diverse functions of ERBB2 in different cellular compartments.
The molecular weight of ERBB2 is calculated to be approximately 138 kDa, although it is typically observed at 185 kDa in experimental settings due to post-translational modifications . This discrepancy between calculated and observed molecular weights highlights the significant role of post-translational modifications in ERBB2 function.
ERBB2 is a protein tyrosine kinase that functions as part of several cell surface receptor complexes. Unlike other members of the EGFR family, ERBB2 apparently needs a coreceptor for ligand binding, as it does not directly interact with neuregulins or other known ligands . It serves as an essential component of neuregulin-receptor complexes and plays crucial roles in multiple cellular processes.
Upon activation, ERBB2 initiates various signaling cascades. One significant pathway involves the MEMO1-RHOA-DIAPH1 signaling axis, which leads to the phosphorylation and inhibition of GSK3B at the cell membrane . This inhibition prevents the phosphorylation of APC and CLASP2, allowing their association with the cell membrane, which subsequently enables the localization of MACF1 to the cell membrane—a process required for microtubule capture and stabilization .
In addition to its membrane-associated functions, ERBB2 also plays roles in transcriptional regulation within the nucleus. It associates with specific DNA sequences, such as the 5'-TCAAATTC-3' sequence in the PTGS2/COX-2 promoter, activating its transcription . ERBB2 is also implicated in the transcriptional activation of CDKN1A through mechanisms involving STAT3 and SRC, and participates in the transcription of rRNA genes by RNA Pol I, thereby enhancing protein synthesis and cell growth .
Research has revealed interesting insights into the specific role of Y1139 phosphorylation in ERBB2 function. Contrary to initial hypotheses, mutation studies have shown that the Y1139 site in ERBB2 may not serve as a Grb2-binding site, as mutation of this site did not affect stability, signaling, or transformation . This finding challenges earlier assumptions about the role of Y1139 phosphorylation and suggests that this site may have alternative functions in ERBB2 signaling.
In contrast, other phosphorylation sites on ERBB2, such as Y1221/1222, have been more clearly characterized. For instance, when HER2 itself is phosphorylated on Y1221/1222, it appears to have distinct functional consequences compared to phosphorylation at Y1139 . These differential phosphorylation patterns contribute to the complex regulation of ERBB2 signaling in both normal and pathological contexts.
Dysregulation of ERBB2 phosphorylation is significantly implicated in cancer development and progression, particularly in breast cancer. Research has demonstrated that ERBB2 can stabilize both itself and EGFR by altering autophosphorylation patterns . This stabilization mechanism contributes to sustained signaling, which can drive cancer cell proliferation and survival.
Interestingly, research findings suggest that complementing ERBB2-targeted therapies with anti-EGFR drugs may be beneficial in ERBB2-positive breast cancer . This therapeutic approach reflects the complex interplay between different members of the EGFR family and highlights the importance of understanding specific phosphorylation events in developing effective targeted therapies.
The following table provides detailed technical specifications for the Phospho-ERBB2 (Y1139) Recombinant Monoclonal Antibody:
Parameter | Specification |
---|---|
Product Name | Phospho-ERBB2 (Y1139) Recombinant Monoclonal Antibody |
Product Code | CSB-RA588766A0HU / CABP1285 |
Size | 20uL, 100uL |
Host Species | Rabbit |
Isotype | IgG |
Reactivity | Human |
Immunogen | Synthetic phosphorylated peptide around Y1139 of human ERBB2 (P04626) |
Sequence | PEYV N |
Applications | WB, ELISA, IHC, IF |
Recommended Dilution (WB) | 1:100 - 1:500 |
Recommended Dilution (IHC/IF) | 1:50 - 1:200 |
Conjugate | Unconjugated |
Cellular Localization | Cell membrane, Cytoplasm, Nucleus, Perinuclear region |
Calculated Molecular Weight | 138 kDa |
Observed Molecular Weight | 185 kDa |
Positive Control Sample | A-431+EGF |
Synonyms | NEU; NGL; HER2; TKR1; CD340; HER-2; VSCN2; MLN 19; c-ERB2; HER-2/neu; p185(erbB2) |
The Phospho-ERBB2 (Y1139) Recombinant Monoclonal Antibody undergoes rigorous quality control procedures to ensure consistent performance across different experimental setups. The antibody is validated using A-431 cells treated with EGF as a positive control . This validation process confirms the specificity of the antibody for the phosphorylated form of ERBB2 at Y1139 and ensures reliable detection in various applications.
The recombinant production method contributes significantly to the quality and consistency of the antibody. By using defined genetic material and controlled expression systems, manufacturers can produce antibodies with minimal batch-to-batch variation, ensuring reproducible experimental results across different studies.
Research utilizing Phospho-ERBB2 (Y1139) antibodies has contributed to several important discoveries in cancer biology:
Studies have shown that ERBB2 can stabilize EGFR and itself by altering autophosphorylation patterns . This stabilization mechanism contributes to enhanced signaling duration and intensity, which can drive cancer cell proliferation and survival. Understanding these mechanisms is crucial for developing effective targeted therapies.
Investigation of the specific role of Y1139 phosphorylation has revealed that, contrary to initial hypotheses, this site may not function as a Grb2-binding site . Mutation of the Y1139 site did not affect stability, signaling, or transformation, suggesting alternative functions for this phosphorylation event in ERBB2 signaling.
Recent research has also demonstrated that PTPRO (Protein Tyrosine Phosphatase Receptor Type O) can repress ERBB2-driven breast oncogenesis . In a study using MMTV-ERBB2 transgenic mice, deletion of PTPRO dramatically shortened mammary tumor latency and accelerated tumor growth . This finding highlights the complex regulation of ERBB2 signaling by various phosphatases and kinases.
The insights gained from research using Phospho-ERBB2 (Y1139) antibodies have significant implications for cancer therapy:
Research findings suggest that complementing ERBB2-targeted therapies with anti-EGFR drugs may be beneficial in ERBB2-positive breast cancer . This combination approach reflects the complex interplay between different members of the EGFR family and may improve treatment outcomes for patients with ERBB2-positive malignancies.
Understanding the specific roles of different phosphorylation sites on ERBB2 may lead to the development of more precisely targeted therapies. By targeting specific phosphorylation events or their downstream effectors, researchers may be able to develop treatments with improved efficacy and reduced side effects.
The identification of PTPRO as a negative regulator of ERBB2 signaling suggests potential therapeutic strategies focused on enhancing phosphatase activity or expression . Reexpression of PTPRO through demethylation treatment using agents like 5-azacytidine has been shown to reduce proliferation and colony formation potential in ERBB2-positive breast cancer cells .
This phospho-ERBB2 (Y1139) recombinant monoclonal antibody is produced in vitro. The process begins with the isolation of ERBB2 antibody genes from immunoreactive rabbit B cells. These genes are amplified, cloned into phage vectors, and expressed in mammalian cells to generate substantial quantities of functional antibody. Subsequently, the phospho-ERBB2 (Y1139) antibody is purified from the cell culture supernatant using affinity chromatography. This antibody is suitable for the sensitive and specific detection of human ERBB2 protein phosphorylated at tyrosine 1139 (Y1139) in ELISA, immunohistochemistry (IHC), and immunofluorescence (IF) applications.
Phosphorylation of ERBB2 at Y1139 is a critical post-translational modification that activates downstream signaling pathways involved in cell growth, proliferation, and differentiation. Dysregulation of ERBB2 phosphorylation is implicated in oncogenesis and serves as a target for therapeutic intervention in various cancers, particularly breast cancer.
ERBB2 is a protein tyrosine kinase that participates in several cell surface receptor complexes, typically requiring a coreceptor for ligand binding. It is a crucial component of neuregulin receptor complexes, though neuregulins do not bind to ERBB2 independently. GP30 is a potential ligand. ERBB2 regulates the outgrowth and stabilization of peripheral microtubules (MTs). ERBB2 activation initiates the MEMO1-RHOA-DIAPH1 signaling pathway, leading to the phosphorylation and subsequent inhibition of GSK3B at the cell membrane. This prevents the phosphorylation of APC and CLASP2, enabling their membrane association. Membrane-bound APC facilitates MACF1 localization to the membrane, which is essential for microtubule capture and stabilization. Nuclear ERBB2 is involved in transcriptional regulation, associating with the 5'-TCAAATTC-3' sequence in the PTGS2/COX-2 promoter to activate transcription. It also participates in the transcriptional activation of CDKN1A, a process involving STAT3 and SRC. Furthermore, ERBB2 is involved in the transcription of rRNA genes by RNA Polymerase I, thereby enhancing protein synthesis and cell growth.
Phosphorylation of ERBB2 at Y1139 has distinct biological significance compared to other phosphorylation sites. Y1139 phosphorylation is predominantly associated with apical ERBB2 in polarized cells, while Y1248 phosphorylation is observed with basolateral ERBB2 . This spatial distinction has significant functional implications:
Y1139 phosphorylation creates a docking site for the Grb2 adaptor protein
Y1248 phosphorylation creates binding sites for Shc adaptor proteins
These different adaptor proteins activate distinct downstream signaling pathways
Research has demonstrated that Y1139 phosphorylation leads to activation of p38 and upregulation of Bcl-2, contributing to cell survival pathways . In contrast, Y1248 phosphorylation primarily couples ERBB2 to the Ras-Raf-MAP kinase signal transduction pathway associated with cell proliferation .
Phospho-ERBB2 (Y1139) Recombinant Monoclonal Antibody has been validated for multiple experimental applications:
Application | Recommended Dilution | Positive Control |
---|---|---|
Western Blot (WB) | 1:100 - 1:500 | A-431+EGF |
ELISA | Test dependent | Human samples |
Immunohistochemistry (IHC) | 1:50 - 1:200 | HER2+ breast cancer tissue |
Immunofluorescence (IF) | 1:50 - 1:200 | HER2-overexpressing cell lines |
For optimal results in Western blot applications, researchers should use positive controls such as A-431 epithelial carcinoma cells treated with EGF, which enhances Y1139 phosphorylation . The antibody recognizes human ERBB2 protein phosphorylated specifically at the Y1139 residue, with an observed molecular weight of approximately 185 kDa .
Phospho-ERBB2 (Y1139) Recombinant Monoclonal Antibody is synthetically generated in vitro through a precisely controlled process that offers several advantages over conventional antibodies:
Production Process: The antibody is generated by first extracting ERBB2 antibody genes from B cells isolated from immunoreactive rabbits. These genes are then amplified and cloned into phage vectors, which are subsequently introduced into mammalian cell lines for antibody production .
Purification Method: The antibody is purified from culture supernatant through affinity chromatography, ensuring high purity and specificity .
Consistency Advantages: Recombinant production eliminates batch-to-batch variability common in traditional hybridoma-derived antibodies, providing consistent performance across experiments .
Specificity: The recombinant antibody demonstrates high specificity for the phosphorylated Y1139 epitope with minimal cross-reactivity to other phosphorylation sites or non-phosphorylated ERBB2 .
Appropriate controls are critical for experiments using phospho-specific antibodies:
Positive Controls:
A-431 human epithelial carcinoma cells treated with EGF (10 ng/mL for 5 minutes)
SKOV-3 ovarian cancer cells, which naturally express ERBB2 phosphorylated at Y1139
Synthetic phosphorylated peptide containing the Y1139 sequence (PEYV N)
Negative Controls:
Untreated cell lines that express ERBB2 but have low basal phosphorylation
Cell lines treated with ERBB2 kinase inhibitors (e.g., lapatinib)
Antibody blocking with the immunizing phosphopeptide
Phosphatase treatment of samples to remove phosphorylation
Validation Strategy:
Compare phospho-ERBB2 (Y1139) levels before and after EGF stimulation
Verify specificity using ERBB2 kinase inhibitors to block phosphorylation
Confirm total ERBB2 expression using a separate pan-ERBB2 antibody
Use genetic knockdown/knockout models to confirm antibody specificity
Optimal detection of phosphorylated proteins requires careful sample preparation:
Cell Lysis Buffer Composition:
Use RIPA or NP-40 buffer containing:
Phosphatase inhibitors (sodium orthovanadate 1mM, sodium fluoride 10mM)
Protease inhibitors (PMSF 1mM, protease inhibitor cocktail)
EDTA (1mM)
Maintain cold temperature (4°C) throughout processing
Stimulation Protocol:
SDS-PAGE Conditions:
Use 7.5% gels for optimal resolution of the 185 kDa ERBB2 protein
Include reducing conditions (β-mercaptoethanol)
Use freshly prepared samples whenever possible
Transfer Conditions:
Transfer proteins to PVDF membrane (preferred over nitrocellulose)
Use wet transfer at low voltage (30V) overnight at 4°C
Blocking and Antibody Incubation:
Block with 5% BSA in TBS-T (not milk, which contains phosphatases)
Optimal antibody dilution: 1:100 to 1:500
Incubate overnight at 4°C with gentle agitation
Analyzing multiple phosphorylation sites provides a comprehensive understanding of ERBB2 activation status and downstream signaling:
Methodological Approach:
Multiplex Western Blotting:
Sequential probing with different phospho-specific antibodies
Use fluorescent secondary antibodies with distinct emission spectra
Strip and reprobe membranes with caution that stripping may reduce signal
Phospho-Flow Cytometry:
Simultaneously measure multiple phosphorylation sites at single-cell level
Use different fluorophore-conjugated phospho-specific antibodies
Particularly useful for heterogeneous cell populations
Phospho-Proteomics:
Mass spectrometry-based approach for unbiased assessment
Can identify all phosphorylation sites simultaneously
Sample preparation protocol:
Immunoprecipitate total ERBB2
Digest with trypsin
Enrich phosphopeptides using TiO₂ or IMAC
Analyze by LC-MS/MS
Proximity Ligation Assay (PLA):
Visualize and quantify specific phosphorylation events in situ
Combine antibodies against total ERBB2 and different phospho-sites
Enables spatial analysis of phosphorylation patterns
Data Integration Strategy:
Create phosphorylation pattern profiles by calculating the relative ratios of different phosphorylation sites (e.g., pY1139:pY1248) to correlate with biological outcomes or therapeutic responses.
Discrepancies between total ERBB2 and phospho-ERBB2 (Y1139) signals provide important biological insights:
Interpretation Framework:
High total ERBB2, low pY1139:
May indicate inactive receptor status
Could suggest inhibition of upstream kinases
Potential presence of active phosphatases
Possible antagonistic phosphorylation at other sites
Low total ERBB2, high pY1139:
May indicate highly efficient phosphorylation
Possible stabilization of phosphorylated form
Could reflect selective antibody sensitivity issues
Consider rapid receptor turnover after phosphorylation
Tissue-specific patterns:
Quantification Approach:
Calculate the phosphorylation ratio (pY1139/total ERBB2) to normalize for variations in total protein expression and enable more accurate comparisons between experimental conditions.
Phospho-specific antibody experiments present several technical challenges:
Common Issue | Potential Causes | Solutions |
---|---|---|
Weak or no signal | - Rapid dephosphorylation - Insufficient phosphorylation - Low antibody sensitivity | - Strengthen phosphatase inhibition - Verify stimulation protocol - Optimize antibody concentration - Use signal enhancement systems |
High background | - Non-specific binding - Cross-reactivity - Inadequate blocking | - Increase blocking time/concentration - Add 0.1% Tween-20 to antibody dilution - Optimize antibody dilution - Try alternative blocking agents (BSA vs. casein) |
Inconsistent results | - Variable phosphorylation status - Unstable phosphorylation - Cell heterogeneity | - Standardize stimulation protocols - Verify cell culture conditions - Consider single-cell analysis methods - Use phosphatase inhibitors consistently |
Multiple bands | - Degradation products - Cross-reactivity - Post-translational modifications | - Use fresh samples - Add additional protease inhibitors - Verify antibody specificity - Consider pre-clearing lysates |
Validation Strategy:
To confirm antibody specificity:
Perform peptide competition assays using phosphorylated and non-phosphorylated Y1139 peptides
Compare results with other phospho-ERBB2 (Y1139) antibodies from different vendors
Use cells expressing ERBB2 with Y1139F mutation as negative controls
The phosphorylation status of ERBB2 at Y1139 is dynamically regulated and highly sensitive to experimental conditions:
Cell Density Effects:
Growth Factor Stimulation:
EGF stimulation (10 ng/mL, 5 minutes) enhances Y1139 phosphorylation
Different growth factors may induce distinct phosphorylation patterns
Kinetics of phosphorylation vary by site (rapid vs. sustained)
Microenvironment Factors:
Matrix components can alter ERBB2 dimerization and phosphorylation
Hypoxia affects phosphorylation patterns
pH changes influence kinase activity and phosphatase function
Receptor Localization:
Experimental Strategy:
To ensure reproducible phosphorylation detection:
Standardize cell culture conditions (density, media composition, passage number)
Control timing precisely during stimulation and lysis steps
Document and maintain consistent sample processing times
Consider the polarization state of epithelial cells when interpreting results
Recent research has revealed the importance of higher order ERBB receptor complexes beyond simple dimers:
Key Insights:
ERBB2-ERBB3 heterodimers create potent mitogenic signals despite ERBB3's impaired kinase activity
The phosphorylation mechanism of ERBB2 in these complexes challenges established models of phosphorylation in trans
Higher order complexes facilitate "proxy phosphorylation" even at very low receptor levels (below 10,000 receptors per cell)
Experimental Evidence:
An inhibitory RNA aptamer targeting ERBB3's extracellular domain disrupts higher order interactions without affecting heterodimerization
This selective disruption inhibits ERBB2 phosphorylation and MAPK signaling while minimally affecting ERBB3 phosphorylation and AKT signaling
This suggests a model of side-by-side oriented heterodimers that facilitate proxy phosphorylation
Research Applications:
Use Phospho-ERBB2 (Y1139) antibody to:
Map the dynamics of higher order complex formation
Investigate how different therapeutic antibodies affect specific phosphorylation sites
Explore differences in signaling between canonical dimers and higher order complexes
Understanding phosphorylation-specific resistance mechanisms is crucial for developing improved therapeutic strategies:
Clinical Correlations:
Studies have found that phosphorylated HER2 status correlates with response to trastuzumab (Herceptin) therapy
Acquisition of resistance to trastuzumab correlates with negativity for phosphorylated HER2 (p=0.028)
Positive expression of phosphorylated HER2 may yield additional prognostic information in breast cancer
Molecular Mechanisms:
Receptor Interactions:
Downstream Pathway Shifts:
Experimental Approach:
To investigate resistance mechanisms:
Compare phosphorylation patterns between sensitive and resistant cells
Assess changes in phosphorylation after acute vs. chronic treatment
Determine whether resistance can be overcome by targeting specific phosphorylation-dependent pathways
Spatial organization of ERBB2 signaling is a critical dimension of its biological activity:
Spatial Regulation Evidence:
Polarized epithelial cells show distinct phosphorylation patterns:
These different phosphorylation patterns activate distinct downstream signaling pathways
Methodological Approaches:
Vectorial Biotinylation:
Selectively biotinylate either apical or basolateral membrane proteins
Pull down with streptavidin and immunoblot for Phospho-ERBB2 (Y1139)
Compare with other phosphorylation sites (e.g., Y1248)
Protocol details:
Confocal Microscopy:
Perform immunofluorescence with Phospho-ERBB2 (Y1139) antibody
Counterstain with markers for different cellular compartments
Analyze in xy and xz planes to determine spatial distribution
Quantify colocalization with membrane domain markers
Selective Inhibitor Application:
Application Example:
Investigation of ERBB2 relocalization by mucin4 overexpression revealed that:
ERBB2 relocalized by mucin4 overexpression is phosphorylated at both Y1248 and Y1139
This dual phosphorylation may contribute to altered signaling profiles and therapeutic responses
Traditional bulk analysis methods may mask important heterogeneity in ERBB2 phosphorylation:
Novel Methodological Approaches:
Single-Cell Phospho-Proteomics:
Reveals cell-to-cell variability in phosphorylation patterns
May identify rare cell populations with unique phosphorylation signatures
Enables correlation of phosphorylation status with other cellular parameters
Mass Cytometry (CyTOF):
Simultaneously measure multiple phosphorylation sites at single-cell resolution
Incorporate measurements of downstream signaling molecules
Create high-dimensional phosphorylation profiles of individual cells
Live-Cell Phosphorylation Biosensors:
FRET-based sensors to monitor Y1139 phosphorylation in real-time
Track dynamics of phosphorylation in response to stimuli
Correlate with cellular behaviors (migration, division, death)
Research Applications:
Investigate whether heterogeneous phosphorylation patterns predict therapeutic response
Determine if rare cells with specific phosphorylation signatures drive disease progression
Study temporal dynamics of phosphorylation/dephosphorylation cycles at single-cell level
Emerging evidence suggests ERBB2 phosphorylation may play crucial roles in cancer stem cell (CSC) biology:
Research Questions:
Do cancer stem cells display distinct ERBB2 phosphorylation patterns?
Is Y1139 phosphorylation specifically involved in stemness maintenance?
How do therapies targeting ERBB2 affect phosphorylation in CSC populations?
Experimental Approaches:
Isolate CSCs using established markers (CD44+/CD24-, ALDH+)
Compare phosphorylation patterns between CSCs and non-CSC populations
Determine effects of manipulating Y1139 phosphorylation on:
Self-renewal capacity
Differentiation potential
Therapeutic resistance
Potential Mechanisms:
Y1139 phosphorylation and Grb2 recruitment may activate specific survival pathways in CSCs
Phosphorylation at Y1139 might regulate interactions with stemness-promoting factors
CSCs may display altered spatial organization of ERBB2, affecting phosphorylation patterns
Integrating phosphorylation data into predictive models represents a frontier in precision medicine:
Modeling Approaches:
Dynamic Phosphorylation Networks:
Model the temporal sequence of phosphorylation events
Incorporate feedback and feedforward regulation
Simulate effects of targeted inhibitors on phosphorylation cascades
Multi-scale Models:
Connect molecular phosphorylation events to cellular phenotypes
Integrate data across scales (molecular, cellular, tissue)
Predict emergent behaviors from phosphorylation patterns
Machine Learning Applications:
Train algorithms on phosphorylation datasets to predict drug responses
Identify patterns not apparent through conventional analysis
Develop phosphorylation signatures that correlate with clinical outcomes
Data Integration Requirements:
Quantitative phosphorylation measurements (absolute or relative)
Temporal dynamics of multiple phosphorylation sites
Spatial information about phosphorylation patterns
Correlation with downstream pathway activation
Clinical outcome data linked to phosphorylation profiles
Practical Applications:
Predict which patients will benefit from anti-ERBB2 therapies
Design optimal combination therapies based on phosphorylation profiles
Develop treatment sequencing strategies to prevent resistance development