Phospho-FOXO3 (Ser253) Antibody

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Description

Western Blotting (WB)

  • Detects endogenous FOXO3 phosphorylated at Ser253 in human, mouse, and rat samples .

  • Observed molecular weight (~97 kDa) often exceeds the calculated 71 kDa due to post-translational modifications .

Immunohistochemistry (IHC) & Immunofluorescence (IF)

  • Validated in paraffin-embedded tissues (e.g., rat testis) and cell lines (e.g., HeLa) .

Immunoprecipitation (IP)

  • Clone #13129 and #9466 (Cell Signaling) are optimized for IP to study FOXO3 phosphorylation dynamics .

Phosphorylation Mechanism

  • Akt/PKB Pathway: Ser253 phosphorylation by Akt promotes 14-3-3 protein binding, retaining FOXO3 in the cytoplasm and inhibiting pro-apoptotic activity .

  • Oxidative Stress Response: Dephosphorylation triggers nuclear translocation, activating Fas ligand-dependent apoptosis .

Phosphorylation SiteKinase InvolvedFunctional OutcomeCitations
Ser253Akt1/PKBCytoplasmic retention, survival
Ser209STK4/MST1Nuclear translocation, apoptosis
Ser315Indirectly via AktEnhanced 14-3-3 binding

Cellular Localization

  • Predominantly cytoplasmic under survival signals (e.g., IGF-1) .

  • Translocates to the nucleus during metabolic stress or growth factor withdrawal .

Validation and Technical Notes

  • Cross-Reactivity: Broad species reactivity, including primates (monoclonal clones) and livestock (polyclonal clones) .

  • Buffer & Storage: Stable in glycerol-containing buffers at -20°C for 12 months .

  • Dilution Ranges:

    • WB: 1:500–1:2000

    • IHC: 1:100–1:300

Research Implications

  • Cancer Biology: Used to study FOXO3 inactivation in tumor survival pathways .

  • Neurodegeneration: Highlights FOXO3’s role in oxidative stress-induced neuronal death .

  • Metabolic Regulation: AMPK-mediated phosphorylation at Ser30 alters mitochondrial trafficking under metabolic stress .

Product Specs

Form
Supplied at 1.0mg/mL in phosphate buffered saline (without Mg2+ and Ca2+), pH 7.4, 150mM NaCl, 0.02% sodium azide and 50% glycerol.
Lead Time
Generally, we can ship the products within 1-3 working days after receiving your orders. The delivery time may vary depending on the purchasing method or location. For specific delivery time, please consult your local distributors.
Synonyms
AF6q21 antibody; AF6q21 protein antibody; DKFZp781A0677 antibody; FKHR2 antibody; FKHRL 1 antibody; FKHRL1 antibody; FKHRL1P2 antibody; Forkhead (Drosophila) homolog (rhabdomyosarcoma) like 1 antibody; Forkhead box O3 antibody; Forkhead box O3A antibody; Forkhead box protein O3 antibody; Forkhead box protein O3A antibody; Forkhead Drosophila homolog of in rhabdomyosarcoma like 1 antibody; Forkhead homolog (rhabdomyosarcoma) like 1 antibody; Forkhead in rhabdomyosarcoma like 1 antibody; Forkhead in rhabdomyosarcoma-like 1 antibody; FOX O3A antibody; FOXO2 antibody; foxo3 antibody; FOXO3_HUMAN antibody; FOXO3A antibody; MGC12739 antibody; MGC31925 antibody
Target Names
Uniprot No.

Target Background

Function
Phospho-FOXO3 (Ser253) Antibody is a transcriptional activator that recognizes and binds to the DNA sequence 5'-[AG]TAAA[TC]A-3'. It regulates various cellular processes, including apoptosis and autophagy. This antibody acts as a positive regulator of autophagy in skeletal muscle. In starved cells, it enters the nucleus following dephosphorylation and binds to the promoters of autophagy genes, such as GABARAP1L, MAP1LC3B, and ATG12, thereby activating their expression and leading to proteolysis of skeletal muscle proteins. In the absence of survival factors, it triggers apoptosis, including neuronal cell death upon oxidative stress. It participates in post-transcriptional regulation of MYC. Following phosphorylation by MAPKAPK5, it promotes the induction of miR-34b and miR-34c expression, which are post-transcriptional regulators of MYC that bind to the 3'UTR of MYC transcript and prevent its translation. In response to metabolic stress, it translocates into the mitochondria and promotes mtDNA transcription. It also serves as a key regulator of chondrogenic commitment of skeletal progenitor cells in response to lipid availability. When lipid levels are low, it translocates to the nucleus and promotes expression of SOX9, which induces chondrogenic commitment and suppresses fatty acid oxidation. It also acts as a key regulator of regulatory T-cells (Treg) differentiation by activating expression of FOXP3.
Gene References Into Functions
  1. Plays a role in autophagy activation and the maintenance of intracellular homeostasis in inflamed odontoblasts. PMID: 29551204
  2. Low FOXO3A expression is associated with colorectal cancer. PMID: 30066886
  3. FoxO3a is overexpressed in 64.71% of hepatocellular carcinoma (HCC) cases. FoxO3a overexpression is associated with aggressive phenotypes of HCC, such as histologic grade, stage, and small vessel invasion. It is also correlated with poor disease-free survival. Downregulation of FoxO3a in a HepG2 cell line inhibited cell proliferation and migration. PMID: 29365018
  4. Stable knockdown of FOXO3, NCOA3, and TCF7L2 restored growth in low glucose but reduced MEK/MAPK phosphorylation, reduced anchorage-independent growth, and modulated expressions of GLUT1 and Ras pathway related proteins. PMID: 29301589
  5. The inhibition of miR-9 could induce apoptosis in cervical cancer by targeting FOXO3. PMID: 29602130
  6. Studies in three European populations present experimental evidence for a functional link between common intronic variants in FOXO3 and human longevity. PMID: 29234056
  7. circRNA-FOXO3 expression is decreased in NSCLC cells and tissue samples. It can inhibit the development of NSCLC cells as a ceRNA through sponging miR-155 and releasing FOXO3 level. PMID: 29620202
  8. The protein expression levels of several autophagy makers, such as LC3I, LC3II, and Beclin-1, were higher in FOXO3 plasmid-transfected AGS cells cultured in an acidic microenvironment than in control cells, while P62 protein expression levels were clearly decreased in FOXO3 plasmid-transfected cells compared with control cells. PMID: 30138933
  9. Studies suggest that miR-487a-3p might repress CTLA4 and FOXO3 by binding to their 3'UTRs and contribute to the development of T1D. PMID: 29859273
  10. Findings determined that the crucial regions corresponding to the SP1 binding sites located between 2,000 and 1,037 bp were essential for FoxO3a transcriptional activity. Furthermore, FoxO3a transcription was upregulated in response to hypoxic and oxidative stress in colorectal tumor cells (CRC), indicating that the interaction between SP1 and FoxO3a may have important implications in CRC progression. PMID: 29565456
  11. FOXO3a expression correlated with adverse clinicopathological features, such as lymph node metastasis, perineural invasion, and higher Ki-67 proliferation index in triple-negative breast cancers. PMID: 29588373
  12. The human FOXO3B locus encodes a bona fide human gene; unlike FOXO3A, FOXO3B is cytosolically localized in both the presence and absence of active Akt. PMID: 29925039
  13. FoxO3a overexpression increased the transcription and protein expression of Bcl2like protein 11 and cyclindependent kinase inhibitor 1B, and inhibited cyclin D1 transcription and expression. PMID: 29257235
  14. miR-132 negatively regulates palmitate induced NLRP3 inflammasome activation through FOXO3 down-regulation in THP-1 cells. PMID: 29258239
  15. These data ascertain the existence of an H2O2-sensitive PRDX1-FOXO3 signaling axis that fine tunes FOXO3 activity toward the transcription of gene targets in response to oxidative stress. PMID: 28398822
  16. Results suggested that SIRT1 deficiency in Bladder cancer cells could suppress cell viability by activating antioxidant response and inducing cell cycle arrest possibly via FOXO3a-related pathways. PMID: 29147649
  17. These results suggest that miR-30b plays important roles in kynurenine-induced increase of FOXO3 expression. PMID: 28905195
  18. Authors found that miR-629 negatively regulated FOXO3 protein expression and decreased the activity of a luciferase reporter construct containing the FOXO3 3'-untranslated region. These results show that miR-629 regulates FOXO3 at the posttranscriptional level, resulting in enhanced cell proliferation and invasion of pancreatic carcinoma. PMID: 29072689
  19. Auranofin could regulate the Her2/Akt/FOXO3 signaling pathway in SKOV3 cells and be used as a potential antitumor agent considering the expression of MUC4 in ovarian cancer patients. PMID: 28765909
  20. FNDC5 gene interactions with candidate genes FOXOA3 and APOE. PMID: 29143599
  21. Results indicate a mechanism for beta-arrestin1 in the regulation of the prostate cancer procession through inhibiting FOXO3a. PMID: 29676828
  22. The findings of this study indicated that FoxO3a knockdown conferred neuroprotective effects after TBI through inhibiting the activation of neuronal autophagy. PMID: 28889023
  23. Low FOXO3A expression is associated with cancer. PMID: 29533771
  24. Data show that forkhead box O3 protein (FOXO3) silencing could inhibit mitophagy and mitochondrial dysfunction induced by manganese chloride (MnCl2). PMID: 28661534
  25. A report reveals an inverse relationship of age with human serum FOXO3A and SIRT3 levels. PMID: 28526626
  26. FOXO3 longevity interactome on chromosome 6 has been described. PMID: 28722347
  27. miR-223-3p regulated cell chemo-sensitivity by targeting FOXO3 in prostatic cancer (PCa) both in vitro and in vivo, providing new potential therapeutic strategy for PCa treatment. PMID: 29518547
  28. H cordata promotes the activation of HIF-1A-FOXO3 and MEF2A pathways. PMID: 27698266
  29. A lower FOXO3 mRNA expression in granulosa cells leads to poor oocyte development in patients with unexplained infertility undergoing controlled ovarian stimulation for in vitro fertilization-embryo transfer. PMID: 28621049
  30. Negative expression of FoxO3/FoxO4 and lymph node metastasis were the risk factors for the poor prognosis of bladder cancer. PMID: 28554751
  31. miR-155-5p promotes fibroblast cell proliferation and inhibits FOXO signaling pathway by negative modulation of both FOXO3 and CDKN1B in vulvar lichen sclerosis. PMID: 29339071
  32. Cytoplasmic retention of FOXO3a may represent a potential biomarker for response to combined treatment with inhibitors of PI3K and autophagy in PIK3CA-mutant cervical cancer cells. PMID: 28036259
  33. Results show that FOXO3-phosphorylation at threonine-32 (T32) and nuclear localization in neuroblastoma biopsies significantly correlated with stage IV disease. Data suggest that, depending on the mode and intensity of activation, cellular FOXO3 acts as a homeostasis regulator promoting tumor growth at hypoxic conditions and tumor angiogenesis in high-stage neuroblastoma. PMID: 27769056
  34. FoxO3a might be a key regulator in cetuximab resistance through up-regulating c-Myc in colorectal cancer targeted therapy. PMID: 27825133
  35. Atorvastatin strengthens Skp2 binding to FOXO1 or ICAM1, leading to ubiquitination and degradation. Skp2-dependent ubiquitination of major pathogenic molecules is the key mechanism for statin's protective effect on endothelial function in diabetes. PMID: 28802579
  36. Transcriptional factor PAX3 (PAX3) exerted its tumor suppressor function by inhibiting the activity of major signaling pathways and enhancing expression and activity of transcription factor forkhead box O3 protein (FOXO3a). PMID: 27458157
  37. The result suggests that FOXO3 rs12212067 polymorphism does not play an important role in susceptibility to T. cruzi infection and/or chronic Chagas cardiomyopathy. PMID: 27125259
  38. Overexpression of circ-Foxo3 decreased the interaction between Foxo3 and MDM2, and repressed the function of MDM2 in modulating poly-ubiquitination of Foxo3. PMID: 27886165
  39. Silencing FOXO3 diminishes bepridil- and trifluoperazine-induced apoptosis in triple-negative breast cancer cells. PMID: 27283899
  40. The authors found that transient TUBB3 activation, through ABCB1, in response to the stimulation of FOXO3a expression, significantly contributes to the cross-resistance of the paclitaxel-resistant cell population and consequently limits the efficacy of both agents where cancer cells have developed multiple resistance. PMID: 27284014
  41. Findings provide further evidence for the involvement of FoxO3 during terminal erythropoiesis and confirm the modulation of the PI3K/AKT pathway as a potential therapeutic strategy for beta-thalassemia. PMID: 29099866
  42. The data reveal a previously unexplored function of FOXO3a in gastric cancer invasion by regulating proteins involved in extracellular matrix degradation and Epithelial-Mesenchymal Transition. FOXO3a may be of prognostic value and a potential therapeutic target in blocking tumor metastasis. PMID: 27127880
  43. Pro-apoptotic role of miR-34a in PA-induced cholangiocyte lipoapoptosis in culture and in the liver. PMID: 28250026
  44. Ergosterol peroxide stimulated Foxo3 activity by inhibiting pAKT and c-Myc and activating pro-apoptotic protein Puma and Bax to induce HepG2 cancer cell death. PMID: 27058618
  45. These results show that significantly increased levels of FOXO3, IRF4, and xIAP mRNA in Chinese HIV-1-infected patients. PMID: 27841661
  46. Knockdown of MIEF2 reduces DOX-induced mitochondrial fission and apoptosis in cardiomyocytes and in vivo. Also, knockdown of MIEF2 protects heart from DOX-induced cardiotoxicity. Our study identifies a novel pathway composed of Foxo3a and MIEF2 that mediates DOX cardiotoxicity. PMID: 28137654
  47. Data show that the GSK3B-FOXO3 pathway is activated after partial hepatectomy, and this may be one of the mechanisms that lead to upregulation of hepatic IGF1R after partial hepatectomy. PMID: 28952285
  48. Chromosome 6q deletion correlates with poor prognosis and low relative expression of FOXO3 in chronic lymphocytic leukemia patients. PMID: 28699185
  49. Diabetic Glc also promoted beta-catenin nuclear localization and the formation of a complex with FOXO3a that localized to the promoters of Sod2, p21(cip1), and potentially p27(kip1). PMID: 27411103
  50. The first report of the association between rs13217795 and allergic rhinitis, and the first independent verification of the association between rs13217795 and asthma. PMID: 29141605

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Database Links

HGNC: 3821

OMIM: 602681

KEGG: hsa:2309

STRING: 9606.ENSP00000339527

UniGene: Hs.220950

Involvement In Disease
A chromosomal aberration involving FOXO3 is found in secondary acute leukemias. Translocation t(6;11)(q21;q23) with KMT2A/MLL1.
Subcellular Location
Cytoplasm, cytosol. Nucleus. Mitochondrion matrix. Mitochondrion outer membrane; Peripheral membrane protein; Cytoplasmic side.
Tissue Specificity
Ubiquitous.

Q&A

What is the biological significance of FOXO3 phosphorylation at Ser253?

FOXO3 phosphorylation at Ser253 represents a critical regulatory mechanism that determines its subcellular localization and transcriptional activity. When phosphorylated at Ser253 (typically by AKT/PKB), FOXO3 interacts with 14-3-3 proteins and is retained in the cytoplasm, preventing its transcriptional activity . This phosphorylation occurs in the presence of survival factors such as IGF1 . When dephosphorylated, FOXO3 translocates to the nucleus where it can activate transcription of target genes involved in processes including apoptosis, stress resistance, and metabolism .

The phosphorylation status at Ser253 serves as an important biomarker for various signaling pathways, particularly the PI3K-AKT axis, and has implications for research in cancer biology, aging, and cellular stress responses .

How should Phospho-FOXO3 (Ser253) antibodies be stored and handled to maintain optimal performance?

For optimal antibody performance, follow these evidence-based storage and handling practices:

Storage ConditionDurationNotes
-20°C12 monthsPrimary long-term storage
4°CShort-term onlyFor immediate use
AliquotRecommendedTo minimize freeze-thaw cycles

Additional handling recommendations:

  • Avoid repeated freeze-thaw cycles as they significantly reduce antibody activity

  • For antibodies in glycerol buffer (typically 40-50% glycerol), thaw completely before use

  • Some formulations contain sodium azide as a preservative, which requires appropriate safety precautions

  • Allow antibody to equilibrate to room temperature before opening the vial to prevent condensation

  • When diluting, use the recommended buffer to maintain antibody stability and activity

How can the specificity of Phospho-FOXO3 (Ser253) antibodies be validated for experimental use?

Rigorous validation of phospho-specific antibodies is critical for experimental reliability. Implement these methodological approaches:

  • Phosphatase Treatment Controls:

    • Treat half of your sample with lambda phosphatase before western blotting

    • A specific phospho-antibody should show signal reduction or elimination in the phosphatase-treated sample

  • Phosphorylation-Defective Mutants:

    • Generate Ser253Ala (S253A) FOXO3 mutant constructs

    • The phospho-antibody should not detect the S253A mutant even under conditions that promote phosphorylation

  • Specific Kinase Inhibitors:

    • Use AKT inhibitors (e.g., MK-2206, AKT inhibitor VIII) to reduce Ser253 phosphorylation

    • A reduction in signal following treatment confirms antibody specificity for the AKT-mediated phosphorylation site

  • Signal Induction:

    • Stimulate cells with growth factors known to activate the PI3K/AKT pathway

    • Compare signal intensity between stimulated and serum-starved cells

  • Peptide Competition Assay:

    • Pre-incubate antibody with excess phospho-peptide used as immunogen

    • This should abolish specific binding, confirming antibody specificity

  • Knockout/Knockdown Validation:

    • Use FOXO3-knockout or knockdown cells as negative controls

    • Any signal detected in these cells represents non-specific binding

What are the key considerations when analyzing subcellular localization of phosphorylated FOXO3 using immunofluorescence?

When conducting phospho-FOXO3 immunofluorescence studies, address these critical methodological points:

  • Fixation Method Selection:

    • Paraformaldehyde (4%) is typically preferred for phospho-epitope preservation

    • Methanol fixation can sometimes expose phospho-epitopes better but may disrupt certain cellular structures

    • Compare both methods empirically for your specific system

  • Phosphatase Inhibitor Inclusion:

    • Add phosphatase inhibitors (e.g., sodium orthovanadate, β-glycerophosphate) to all buffers

    • Include in both sample preparation and washing steps to prevent epitope loss

  • Validation of Cytoplasmic vs. Nuclear Signal:

    • Use treatment conditions known to affect FOXO3 localization:

      • Serum starvation should promote nuclear localization (dephosphorylation)

      • Growth factor stimulation should promote cytoplasmic retention (phosphorylation)

    • Co-stain with total FOXO3 antibody (different species) to compare distributions

  • Counter-verification with Phosphomimetic Mutants:

    • Generate S253D (phosphomimetic) FOXO3 constructs

    • These should localize predominantly to the cytoplasm, confirming the biological effect of this phosphorylation

  • Signal Quantification Approach:

    • Use nuclear/cytoplasmic signal intensity ratios rather than qualitative assessment

    • Conduct cell fractionation followed by western blotting as a complementary technique

How does TGFβ signaling interact with FOXO3 Ser253 phosphorylation status, and what methodological approaches can investigate this relationship?

Research has revealed complex interactions between TGFβ signaling and FOXO3 phosphorylation at Ser253. Key experimental approaches include:

  • Time-Course Analysis of TGFβ Effects:

    • Short-term TGFβ treatment (4-10 minutes) induces Ser253 phosphorylation

    • This leads to nuclear exclusion of FOXO3

    • Longer treatment (48 hours) results in proteasomal degradation of FOXO3

  • Mechanistic Investigation Methods:

    • Subcellular Fractionation: Isolate nuclear and cytoplasmic fractions after TGFβ treatment to quantify FOXO3 translocation

    • Inhibitor Studies: Combine TGFβ with proteasome inhibitors (MG132) to verify degradation mechanisms

    • Co-immunoprecipitation: Determine if TGFβ affects FOXO3 association with 14-3-3 proteins

  • Transcriptional Output Assessment:

    • ChIP-PCR to measure FOXO3 binding to target gene promoters following TGFβ treatment

    • RT-qPCR to quantify expression changes in FOXO3 target genes (e.g., SOX2)

  • Signal Pathway Cross-Talk Analysis:

    • Investigate non-canonical TGFβ signaling by combining TGFβ with AKT inhibitors

    • Monitor phosphorylation at multiple FOXO3 sites (Thr32, Ser253, Ser315) to develop a comprehensive model

This research area has implications for understanding cancer stem cell development, as TGFβ-induced FOXO3 phosphorylation was found to regulate stemness in oral squamous cell carcinoma .

How can Phospho-FOXO3 (Ser253) antibodies be utilized to investigate aging and longevity mechanisms?

FOXO3 is a well-established longevity factor, and its phosphorylation status at Ser253 plays a critical role in aging processes. Implement these research approaches:

  • Age-Dependent Phosphorylation Profiling:

    • Compare phospho-FOXO3 (Ser253) levels across age-matched tissues

    • Establish relationships between phosphorylation status and age-related phenotypes

  • Lifespan-Extending Interventions:

    • Examine how caloric restriction affects FOXO3 phosphorylation

    • Investigate if exercise, rapamycin, or other interventions modulate Ser253 phosphorylation

  • Stress Response Correlation:

    • Subject cells/tissues to oxidative stress while monitoring phospho-FOXO3 dynamics

    • Determine if Ser253 dephosphorylation correlates with activation of stress resistance genes

  • Tissue-Specific Aging Analysis:

    • Compare phospho-FOXO3 levels across tissues with different aging rates

    • Focus on cardiovascular tissues, where FOXO3 plays crucial roles in preventing age-related diseases

  • Genetic Modification Studies:

    • Use phosphomimetic (S253D) or phospho-deficient (S253A) FOXO3 mutants

    • Determine if these modifications affect cellular senescence markers and lifespan in model organisms

  • Multi-Site Phosphorylation Analysis:

    • Investigate how Ser253 phosphorylation relates to other FOXO3 modifications

    • Develop a comprehensive model of the "FOXO3 code" in aging

What is the relationship between FOXO3 Ser253 phosphorylation and cancer stem cell biology?

Research has revealed important connections between FOXO3 phosphorylation and cancer stem cell (CSC) properties. To investigate this relationship:

  • CSC Marker Correlation Studies:

    • Compare phospho-FOXO3 (Ser253) levels with expression of stemness markers:

      • SOX2, ABCG2, CD44 (positively correlated with phosphorylation)

      • IVL (differentiation marker, negatively correlated with phosphorylation)

  • Functional Assays for CSC Properties:

    • Side population analysis: Measure efflux of Hoechst 33342 by ABCG2 transporters

    • Tumorsphere formation assays: Compare between cells with different FOXO3 phosphorylation states

    • Limiting dilution assays: Determine tumor-initiating capacity in vivo

  • Transcriptional Control Analysis:

    • ChIP-PCR to assess FOXO3 binding to stemness gene promoters

    • Evaluate how Ser253 phosphorylation affects this binding

  • Signal Pathway Integration:

    • Examine how TGFβ induces stemness through AKT-mediated FOXO3 phosphorylation

    • Study how this non-canonical pathway differs from traditional SMAD signaling

Key research findings indicate that:

  • FOXO3 negatively regulates stemness in oral squamous cell carcinoma

  • TGFβ induces FOXO3 phosphorylation at Ser253 via AKT

  • This phosphorylation causes nuclear exclusion and subsequent degradation of FOXO3

  • Decreased FOXO3 activity leads to increased expression of stemness genes

How can researchers troubleshoot inconsistent results when using Phospho-FOXO3 (Ser253) antibodies in different experimental systems?

When encountering inconsistent results with phospho-specific antibodies, implement this systematic troubleshooting approach:

How does FOXO3 Ser253 phosphorylation coordinate with other post-translational modifications to generate the "FOXO3 code"?

FOXO3 regulation involves a complex interplay of multiple post-translational modifications that collectively form a "FOXO3 code." To decipher this code:

  • Multi-Site Phosphorylation Relationships:

    • Ser253 phosphorylation typically occurs alongside Thr32 and Ser315 phosphorylation by AKT

    • These three sites cooperatively regulate 14-3-3 binding and nuclear exclusion

    • Other kinases that phosphorylate FOXO3 at different sites include:

KinasePhosphorylation SiteEffect on FOXO3 ActivityRelationship to Ser253
AKT/PKBThr32, Ser253, Ser315Inhibits (cytoplasmic retention)Primary focus of this FAQ
JNKSer574Activates (promotes apoptotic program)Can override AKT-mediated inhibition
AMPKSer30, various sitesActivates (promotes metabolic adaptation)Compatible with Ser253 phosphorylation
MST1Ser209Activates (promotes stress response)Disrupts 14-3-3 binding induced by Ser253 phosphorylation
MAPKAPK5Various sitesActivates (promotes nuclear localization)Counteracts Ser253 effects
ERK, IKKβ, SGKVarious sitesInhibitsSimilar effects to Ser253 phosphorylation
  • Methodological Approaches to Study the Code:

    • Phospho-Proteomic Analysis: Mass spectrometry to identify all modifications simultaneously

    • Phospho-Mutant Panels: Creating combinations of phospho-mimetic and phospho-deficient mutations

    • Sequential Kinase Assays: Testing hierarchical relationships between modifications

  • Context-Dependent Interpretation:

    • The same modifications may have different outcomes depending on:

      • Cell type and tissue context

      • Metabolic state

      • Presence of specific cofactors and binding partners

    • Design experiments to test the same modifications across different contexts

What are the methodological approaches to distinguish between causes and consequences of FOXO3 Ser253 phosphorylation in disease states?

Establishing causal relationships in FOXO3 phosphorylation research requires specific experimental designs:

  • Temporal Analysis Strategies:

    • High-resolution time-course experiments to determine the sequence of phosphorylation events

    • Pulse-chase approaches to track the fate of phosphorylated FOXO3 populations

  • Genetic Modification Approaches:

    • CRISPR/Cas9 to create endogenous S253A or S253D knock-in mutations

    • Inducible expression systems for temporal control of mutant FOXO3 expression

  • Pharmacological Intervention Design:

    • Use highly specific AKT inhibitors with minimal off-target effects

    • Apply inhibitors at different disease stages to determine when pathway intervention is effective

  • In Vivo Disease Model Strategies:

    • Generate tissue-specific FOXO3 phosphorylation-deficient mouse models

    • Challenge with disease-inducing conditions and compare outcomes to wild-type

  • Multi-Parametric Analysis Methods:

    • Correlate FOXO3 phosphorylation with multiple disease markers simultaneously

    • Use systems biology approaches to model signaling networks and identify key nodes

  • Rescue Experiment Design:

    • Determine if disease phenotypes can be rescued by:

      • Wild-type FOXO3 but not S253A mutant

      • S253D phosphomimetic FOXO3 but not wild-type

    • These complementary approaches help establish causality direction

How can researchers integrate FOXO3 Ser253 phosphorylation data with broader signaling network analysis?

To place FOXO3 phosphorylation within its complex signaling context:

  • Multi-Omics Integration Approaches:

    • Combine phospho-proteomics with transcriptomics to link FOXO3 phosphorylation to gene expression changes

    • Integrate metabolomics to connect FOXO3 status with cellular metabolic state

    • Use computational methods to identify regulatory network hubs

  • Parallel Pathway Analysis Strategies:

    • Simultaneously monitor PI3K/AKT, MAPK, AMPK, and TGFβ pathway activities

    • Develop multiplexed western blotting or flow cytometry panels for key phosphorylation sites

    • Use pathway inhibitor combinations to dissect pathway crosstalk

  • Single-Cell Analysis Applications:

    • Apply single-cell western blotting or mass cytometry to capture cellular heterogeneity

    • Correlate FOXO3 phosphorylation with other markers at single-cell resolution

    • Identify cell subpopulations with distinct signaling states

  • Spatiotemporal Analysis Methods:

    • Use live-cell imaging with phospho-specific FOXO3 biosensors

    • Track dynamic changes in phosphorylation following various stimuli

    • Correlate subcellular localization with phosphorylation status in real-time

  • Contextual Analysis Frameworks:

    • Design experiments to compare FOXO3 phosphorylation across:

      • Normal vs. disease states

      • Young vs. aged tissues

      • Different tissues and cell types

      • Various stress conditions (oxidative, genotoxic, metabolic)

    • Use these comparisons to build context-specific network models

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