PIR Human

Pirin Human Recombinant
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Description

Introduction to PIR Human

PIR Human (Pirin) is a 34.3 kDa recombinant protein expressed in Escherichia coli, consisting of 310 amino acids (1–290 amino acid region) fused with a 20-amino acid His-tag at the N-terminus . It belongs to the cupin superfamily and contains Fe(II), enabling its function as a redox-sensitive transcriptional cofactor . PIR is ubiquitously expressed in human tissues and localizes to subnuclear structures, interacting with proteins like NF-κB and Bcl-3 to regulate DNA transcription and replication .

Biological Functions

3.1 Transcriptional Regulation
PIR stabilizes complexes involving NF-κB and Bcl-3, modulating DNA transcription and replication. Its iron-dependent redox activity allows it to act as a sensor for oxidative stress, influencing inflammatory and apoptotic pathways .

Role in Cancer

  • Breast Cancer: PIR is overexpressed in breast cancer tissues and correlates with poor patient survival . Knockdown of PIR in MCF7 and MDA-MB-231 cells reduces proliferation, tumor growth, and metastasis by downregulating E2F1 and its target genes (cdk4, cdk6, cycE) .

  • Mechanism: PIR binds to the E2F1 promoter, activating transcription and driving G1/S phase progression .

3.3 Inflammatory Pathways
PIR interacts with the NLRP3 inflammasome and is implicated in chronic obstructive pulmonary disease (COPD). PM (particulate matter) exposure upregulates PIR via the SIRT1-SREBP1 axis, linking it to smoke-induced pulmonary damage .

Key Research Findings

Study FocusResultsImplications
Breast CancerPIR knockdown reduces tumor growth by 60% in xenograft models .Identifies PIR as a therapeutic target.
COPD PathogenesisPIR correlates with early-stage COPD and smoke exposure .Suggests PIR as a biomarker for lung disease.
Redox SignalingPIR stabilizes NF-κB/Bcl-3 complexes under oxidative stress .Highlights role in inflammation.

Clinical and Therapeutic Relevance

  • Cancer Therapy: Small-molecule inhibitors of PIR suppress breast cancer cell proliferation, indicating potential for drug development .

  • Diagnostic Use: Elevated PIR levels in tissues or serum could serve as biomarkers for cancer prognosis or COPD risk assessment .

Product Specs

Introduction
Pirin (PIR) is a member of the cupin superfamily and functions as an iron-containing nuclear protein. It is found in all tissues and is particularly abundant within distinct subnuclear structures. PIR is believed to play a role in regulating DNA transcription and replication processes. It interacts with nuclear factor I/CCAAT box transcription factor and the B cell lymphoma 3-encoded oncoprotein, contributing to its regulatory functions.
Description
Recombinant human PIR protein, expressed in E. coli, is a single polypeptide chain lacking glycosylation. It consists of 310 amino acids (specifically, residues 1-290) and has a molecular weight of 34.3 kDa. The protein includes a 20 amino acid His-tag fused at the N-terminus to facilitate purification using proprietary chromatographic methods.
Physical Appearance
A clear solution that has been sterilized by filtration.
Formulation
The PIR protein is provided as a solution at a concentration of 1 mg/ml. The solution contains 20 mM Tris-HCl buffer (pH 8.0), 20% glycerol, 0.1 M NaCl, and 1 mM DTT.
Stability
For short-term storage (2-4 weeks), the protein should be kept at 4°C. For extended storage, it is recommended to store the protein at -20°C. To further enhance long-term stability, the addition of a carrier protein (0.1% HSA or BSA) is advised. Repeated freezing and thawing of the protein solution should be avoided.
Purity
The purity of the PIR protein is greater than 95.0% as assessed by SDS-PAGE analysis.
Synonyms
Pirin, Probable quercetin 2,3-dioxygenase PIR, Probable quercetinase, PIR.
Source
Escherichia Coli.
Amino Acid Sequence
MGSSHHHHHH SSGLVPRGSH MGSSKKVTLS VLSREQSEGV GARVRRSIGR PELKNLDPFL LFDEFKGGRP GGFPDHPHRG FETVSYLLEG GSMAHEDFCG HTGKMNPGDL QWMTAGRGIL HAEMPCSEEP AHGLQLWVNL RSSEKMVEPQ YQELKSEEIP KPSKDGVTVA VISGEALGIK SKVYTRTPTL YLDFKLDPGA KHSQPIPKGW TSFIYTISGD VYIGPDDAQQ KIEPHHTAVL GEGDSVQVEN KDPKRSHFVL IAGEPLREPV IQHGPFVMNT NEEISQAILD FRNAKNGFER AKTWKSKIGN.

Q&A

What is the fundamental principle behind PIR sensors in human detection studies?

PIR sensors operate on the principle of detecting changes in infrared radiation. When a human subject enters the sensor's field of view, the thermal infrared radiation emitted by the human body (approximately 9.4 μm wavelength) creates a change in the electric potential generated by the pyroelectric material in the sensor. This change is then processed into a signal that can be analyzed for detection and identification purposes. Researchers typically combine PIR sensors with Fresnel lenses to focus the infrared radiation and increase detection sensitivity .

How do research designs for PIR human detection studies typically differ from other sensing technologies?

PIR-based human detection research typically employs experimental designs that account for the passive nature of the technology. Unlike active sensing technologies (radar, ultrasound), PIR experimental designs must carefully control environmental thermal conditions. Most studies use repeated measures designs where the same participants perform multiple movements under different conditions, or independent groups designs comparing different human subjects under standardized conditions. The key methodological consideration is controlling for ambient temperature fluctuations and other infrared sources that could confound results .

What mathematical models best describe the relationship between human movement patterns and PIR signal characteristics?

Advanced PIR human detection research requires sophisticated mathematical modeling of the relationship between human movement and signal generation. The radiation source (human body) can be modeled as a vertical cuboid moving through alternating optic and dark regions created by the Fresnel lens. The resulting signal can be represented as a function of:

S(t)=Af(v,d,w,θ)g(ThTa)S(t) = A \cdot f(v, d, w, θ) \cdot g(T_h - T_a)

Where:

  • S(t) is the signal amplitude over time

  • A is a scaling factor based on sensor sensitivity

  • f(v, d, w, θ) represents the influence of velocity (v), distance (d), width of radiation source (w), and angle of approach (θ)

  • g(T_h - T_a) represents the temperature differential between human body (T_h) and ambient environment (T_a)

This mathematical framework helps researchers design experiments that systematically vary these parameters to understand their relative contributions to detection accuracy .

How can researchers mitigate the effects of multiple factors influencing PIR-based human identification in complex environments?

To address multiple confounding factors in PIR human identification research, a hierarchical experimental design approach is recommended. This involves:

  • Isolating macro influencing factors (environmental temperature, humidity, background radiation) through controlled laboratory studies

  • Quantifying micro influencing factors (target distance, movement speed, body temperature) through parametric experiments

  • Developing compensation algorithms that adjust detection thresholds based on environmental conditions

  • Implementing multi-sensor fusion approaches that combine PIR with complementary sensing modalities

Additionally, matched pairs experimental designs are particularly effective, where pairs of participants matched on key variables (age, body mass, height) are tested under different experimental conditions to control for individual variation .

What is the role of the PIR domain in insulin receptor signaling pathways?

The Phosphorylation Insulin Resistance (PIR) domain is a critical region within the insulin receptor substrate 1 (IRS-1) protein that influences insulin signaling. It is located directly C-terminal to the PTB (phosphotyrosine binding) domain and contains multiple serine residues that can undergo phosphorylation. In its unphosphorylated state, the PIR domain facilitates interaction between IRS-1 and the insulin receptor (IR). Research methodologies to study this interaction typically include protein binding assays, phosphorylation site mapping, and signaling pathway analyses in cellular models .

What experimental methods are commonly used to study serine phosphorylations in the IRS-1 PIR domain?

Common experimental approaches to study serine phosphorylations in the IRS-1 PIR domain include:

  • Site-directed mutagenesis: Converting serine residues to alanine (phospho-deficient) or glutamate (phospho-mimetic)

  • Phospho-specific antibodies: Detecting specific phosphorylated serine residues through immunoblotting

  • Mass spectrometry: Identifying phosphorylation sites and quantifying phosphorylation levels

  • Surface plasmon resonance: Measuring binding affinities between phosphorylated/unphosphorylated IRS-1 and insulin receptor

  • Cell-based assays: Analyzing insulin signaling in cells expressing wild-type or mutant IRS-1 variants

These methods are typically employed in a complementary manner to establish causal relationships between phosphorylation events and signaling outcomes .

How do various kinases differentially regulate the phosphorylation status of the PIR domain under insulin-resistant conditions?

Research into kinase-mediated regulation of the PIR domain requires sophisticated experimental approaches. Various stress-activated kinases (JNK, IKK, S6K, PKC isoforms) can phosphorylate different serine residues within the PIR domain. To study these complex interactions, researchers typically implement:

  • In vitro kinase assays with purified proteins to determine direct phosphorylation events

  • Phosphoproteomics to identify phosphorylation patterns under different cellular conditions

  • Kinase inhibitor studies to establish specificity of phosphorylation events

  • Temporal analyses to determine the sequence of phosphorylation events following stimulus

  • Mathematical modeling of kinase networks to predict phosphorylation cascades

These approaches help establish the hierarchical relationships between different kinases and their roles in inducing insulin resistance through PIR domain phosphorylation .

What methodological approaches can resolve contradictory findings regarding the protective effects of the PIR domain against PTP1B-mediated dephosphorylation?

Recent research suggests that the unphosphorylated PIR domain may protect the insulin receptor from PTP1B-mediated dephosphorylation, which contradicts earlier models where the PIR domain was primarily viewed as a negative regulator. To resolve such contradictions, researchers should implement:

  • Hydrogen-deuterium exchange mass spectrometry to map the precise interactions between the PIR domain and IR kinase domain

  • Structural biology approaches (X-ray crystallography, cryo-EM) to visualize the IR-IRS-1 complex

  • Real-time FRET-based assays to monitor the dynamic interactions between IR, IRS-1, and PTP1B

  • Comparative phosphoproteomic analyses across different metabolic states and insulin-responsive tissues

  • Systems biology approaches integrating phosphorylation, dephosphorylation, and downstream signaling events

These methodologies can help establish context-dependent roles of the PIR domain in both facilitating and attenuating insulin signaling .

What methodological frameworks are recommended for designing Public Impact Research (PIR) involving human participants?

Public Impact Research (PIR) involving human participants benefits from methodological frameworks that integrate stakeholder engagement throughout the research process. Effective PIR design typically includes:

  • Preliminary stakeholder analysis to identify key community members and organizations

  • Co-creation of research questions with affected communities

  • Mixed-methods approaches combining qualitative and quantitative data collection

  • Iterative research design that allows for modification based on participant feedback

  • Implementation of culturally responsive research methods

These approaches help ensure that the research addresses genuine community needs while maintaining methodological rigor. Successful PIR programs often establish community advisory boards that participate in all phases of the research process, from conceptualization through dissemination .

How should researchers balance academic rigor with community needs in Public Impact Research?

Balancing academic rigor with community needs in PIR requires methodological adaptations that respect both scientific standards and community perspectives. Recommended approaches include:

  • Implementing community-based participatory research (CBPR) methodologies

  • Developing hybrid evaluation frameworks that incorporate both traditional academic metrics and community-defined success indicators

  • Using convergent parallel mixed methods designs where quantitative and qualitative data are collected simultaneously and integrated during analysis

  • Establishing clear roles and expectations for both researchers and community partners

  • Creating flexible timelines that accommodate community processes while meeting academic requirements

This balanced approach recognizes that PIR exists at the intersection of fundamental discovery and practical problem-solving, requiring methodologies that address both academic and community standards of evidence .

What methodological approaches best measure and evaluate the long-term societal impact of Public Impact Research initiatives?

Measuring the long-term societal impact of PIR initiatives requires sophisticated methodological approaches that extend beyond traditional academic metrics. Advanced evaluation methodologies include:

  • Contribution analysis: Systematically examining the relationship between research activities and observed societal changes

  • Social return on investment (SROI) analysis: Quantifying social, environmental, and economic outcomes in monetary terms

  • Developmental evaluation: Ongoing evaluation processes that adapt to emerging outcomes and evolving contexts

  • Theory-based impact evaluation: Developing and testing theoretical models of how research activities lead to societal impacts

  • Longitudinal mixed-methods designs: Tracking changes in both quantitative indicators and qualitative experiences over extended time periods

These approaches help researchers move beyond simplistic input-output measures to understand the complex pathways through which research influences society. They also accommodate the reality that PIR impacts often emerge over years or decades and may manifest in unexpected ways .

How can researchers effectively integrate transdisciplinary approaches in Public Impact Research while maintaining methodological integrity?

Transdisciplinary PIR presents unique methodological challenges that require intentional design strategies. To maintain methodological integrity while crossing disciplinary boundaries, researchers should:

  • Develop integrated conceptual frameworks that explicitly map connections between different disciplinary approaches

  • Implement methodological triangulation where phenomena are studied using methods from multiple disciplines

  • Create shared measurement systems with clear operational definitions across disciplines

  • Establish regular cross-disciplinary calibration meetings to ensure consistent implementation of methods

  • Develop specialized mixed-methods designs that intentionally sequence methods from different disciplines

Successful transdisciplinary PIR often employs a "Highly Integrative Basic and Responsive" (HIBAR) approach that combines fundamental research methods with applied problem-solving techniques. This integration should be explicit in research protocols, with clear rationales for how different methodological approaches complement rather than compromise each other .

What procedural steps should researchers follow when handling Personal Information Requests from research participants?

When handling Personal Information Requests from research participants, researchers should follow a structured procedural approach:

  • Verification of requester identity using multi-factor authentication methods

  • Documentation of the request in secure research information systems

  • Comprehensive search for all personal information within the specified scope

  • Review of collected information for third-party personal information that may require redaction

  • Preparation of records in the requested format with appropriate contextual information

  • Secure transmission of information using encrypted channels

  • Documentation of the request fulfillment process

These procedures ensure compliance with privacy regulations while maintaining research integrity. Researchers should also implement a "duty to assist" approach, helping participants formulate and refine their requests to ensure they receive the information they need .

How should researchers approach the balance between data sharing and privacy protection in longitudinal human studies?

Balancing data sharing and privacy protection in longitudinal human studies requires methodological approaches that protect participant rights while enabling scientific progress. Recommended practices include:

  • Implementing tiered consent models that allow participants to authorize different levels of data sharing

  • Developing data minimization protocols that limit collection to essential variables

  • Creating data transformation workflows that de-identify data before sharing while preserving analytical utility

  • Establishing secure data enclaves that allow analysis without direct access to raw data

  • Implementing dynamic consent platforms that allow participants to modify their sharing preferences over time

These approaches recognize that privacy requirements may change over the course of a longitudinal study, requiring flexible systems that can adapt to evolving regulatory environments and participant preferences .

What methodological approaches can researchers use to analyze the potential re-identification risk in de-identified human research datasets?

Analyzing re-identification risk in de-identified research datasets requires sophisticated statistical and computational approaches. Advanced methodological approaches include:

These quantitative approaches should be combined with qualitative risk assessments that consider the specific context, sensitivity of the data, and potential consequences of re-identification. Regular re-assessment is necessary as new data sources emerge that could enable novel re-identification approaches .

How can researchers design information systems that facilitate both robust PIR compliance and longitudinal data integrity in multi-site human studies?

Designing information systems for both PIR compliance and longitudinal data integrity in multi-site studies requires advanced architectural approaches. Methodological recommendations include:

  • Implementing federated data models where participant identifiers are separated from research data but linkable through secure processes

  • Developing modular data processing systems with clear separation between identifiable and de-identified data zones

  • Creating automated PIR fulfillment workflows that maintain complete audit trails

  • Implementing time-based data transformation protocols that increase de-identification as data ages

  • Designing cross-site harmonization processes that maintain consistent privacy protections while accommodating local regulatory variations

What methodological frameworks can integrate privacy-preserving PIR technologies with Public Impact Research goals in human health studies?

Integrating privacy-preserving PIR sensor technologies with Public Impact Research requires methodological frameworks that address both technical and social dimensions. Recommended approaches include:

  • Participatory sensing methodologies where community members co-design data collection protocols

  • Privacy-preserving analytics pipelines that process PIR sensor data without extracting identifiable information

  • Tiered data access models where different stakeholders have appropriate levels of data visibility

  • Hybrid research designs combining anonymized sensor data with participatory qualitative methods

  • Ethical oversight frameworks that continuously evaluate privacy implications throughout the research lifecycle

These integrated approaches recognize that technological and social research methods can be complementary rather than contradictory when designed with careful attention to both privacy and impact considerations .

How can researchers resolve methodological contradictions when PIR biochemical findings conflict with PIR sensor-based human detection data?

When PIR biochemical research (e.g., on insulin resistance) produces findings that appear to conflict with PIR sensor-based human detection research, resolving these contradictions requires sophisticated methodological integration. Researchers should consider:

  • Developing unified theoretical frameworks that explicitly model relationships between molecular and macroscopic human characteristics

  • Implementing multi-scale experimental designs that simultaneously measure biochemical parameters and whole-body infrared emissions

  • Creating integrated data analysis pipelines that can identify correlations between molecular states and sensor detection patterns

  • Employing systems biology approaches that model how cellular-level changes might manifest in detectable infrared signatures

  • Conducting meta-analytical studies that systematically compare findings across different PIR domains to identify potential methodological explanations for apparent contradictions

This integrative approach recognizes that different PIR domains may be studying the same underlying human biology at different scales and through different methodological lenses .

Product Science Overview

Structure and Expression

Pirin is composed of 290 amino acids and has a molecular weight of approximately 34.3 kDa . The recombinant form of human Pirin is often produced in E. coli and includes an N-terminal His-tag to facilitate purification . The protein is typically purified using conventional chromatography techniques and is available in a highly pure form (>95% purity by SDS-PAGE) .

Function and Interactions

Pirin is known to interact with several important proteins, including nuclear factor I/CCAAT box transcription factor and B cell lymphoma 3-encoded oncoprotein . These interactions suggest that Pirin may act as a transcriptional cofactor, playing a role in the regulation of DNA transcription and replication . Additionally, Pirin has been implicated in various cellular processes, including oxidative stress response and apoptosis.

Applications in Research

Recombinant human Pirin is widely used in research to study its role in cellular processes and its interactions with other proteins. It is also used in structural biology studies to understand its β-barrel structure and how it binds to iron .

Storage and Stability

Recombinant human Pirin is typically stored at 4°C for short-term use and at -20°C for long-term storage. It is important to avoid freeze-thaw cycles to maintain the protein’s stability . The protein is usually formulated in a buffer containing Tris-HCl, glycerol, NaCl, and DTT to ensure its stability during storage .

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