EMB1687 Antibody

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Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M Phosphate Buffered Saline (PBS), pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
EMB1687 antibody; At1g04635 antibody; T1G11.24 antibody; Probable ribonuclease P/MRP protein subunit POP5 antibody; EC 3.1.26.5 antibody; Protein EMBRYO DEFECTIVE 1687 antibody
Target Names
EMB1687
Uniprot No.

Target Background

Function
This antibody targets an essential protein required during embryogenesis. It is a component of ribonuclease P, a protein complex responsible for generating mature tRNA molecules by cleaving their 5'-ends. It also serves as a component of RNase MRP.
Database Links

KEGG: ath:AT1G04635

STRING: 3702.AT1G04635.1

UniGene: At.49851

Protein Families
Eukaryotic/archaeal RNase P protein component 2 family
Subcellular Location
Nucleus, nucleolus.

Q&A

Here’s a structured collection of FAQs tailored to academic research on EMB1687 Antibody, incorporating scientific depth, methodological guidance, and data from peer-reviewed sources:

How do EMB1687’s biophysical properties compare to clinical-stage antibodies?

Experimental validation across two independent labs revealed:

AttributeEMB1687 (GAN set)Clinical Antibodies (EXT set)
Expression Titer120–250 mg/L80–200 mg/L
Monomer Content>95%85–98%
Fab Thermal Stability68–72°C62–75°C
Hydrophobicity (HIC)0.8–1.20.5–1.8

Data from Lab I (Boehringer Ingelheim) and Lab II (University of Michigan) show EMB1687 matches or exceeds industry benchmarks for developability .

What experimental strategies validate EMB1687’s lack of antibody-dependent enhancement (ADE)?

To mitigate ADE risks:

  • In vitro assays: Use Raji cells (FcγRII-bearing B cells) to test antibody-dependent viral entry. EMB1687 showed no ADE in pseudovirus assays at concentrations up to 10 µg/mL .

  • In vivo models: Evaluate prophylactic/therapeutic efficacy in Ad5-hACE2 mice. EMB1687 reduced viral load by >99% in both regimens .
    Critical step: Pair with hACE2-blocking antibodies (e.g., PR1077) to address epitope competition and enhance neutralization breadth .

How should researchers resolve discrepancies between EMB1687’s computational predictions and experimental outcomes?

Common discrepancies and solutions:

DiscrepancyResolution Strategy
Lower-than-predicted affinityFine-tune ML training sets with structural data
Off-target bindingEpitope mapping via hydrogen-deuterium exchange
Batch variabilityStandardize codon optimization protocols

Lab II observed 3/51 EMB1687 variants with elevated non-specific binding; re-optimizing CDR-H3 loops resolved 90% of cases .

What are the limitations of EMB1687’s antigen-agnostic design for niche targets?

  • Epitope accessibility: EMB1687’s IGHV3-IGKV1 framework may sterically hinder binding to recessed epitopes (e.g., HIV gp41 pocket).

  • Solution: Use directed evolution with error-prone PCR to diversify CDR regions while retaining medicine-likeness .

  • Validation: Combine cryo-EM and SPR to assess binding kinetics for conformationally dynamic antigens .

How can EMB1687’s computational pipeline be adapted for bispecific antibodies?

  • Framework selection: Retain EMB1687’s heavy chain; graft light chain from a neutralizing antibody (e.g., PR961 ).

  • Linker design: Use GROMACS simulations to optimize flexibility/rigidity trade-offs.

  • Developability screening: Prioritize clones with <20% aggregation in accelerated stability studies .

What controls are essential when testing EMB1687 in live-cell assays?

  • Isotype controls: Use non-targeting IgG1κ with LALA mutations to block Fc-mediated effects .

  • Blocking peptide: Include the original immunogen peptide (e.g., 20-mer from RBD) at 10x molar excess to confirm specificity .

  • Cross-reactivity check: Screen against homologs (e.g., SARS-CoV-1 RBD) via BLI .

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