PPCS Human

Phosphopantothenoylcysteine Synthetase Human Recombinant
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Description

PPCS produced in E.Coli is a single, non-glycosylated polypeptide chain containing 331 amino acids (1-311 a.a.) and having a molecular mass of 36.1kDa.
PPCS is fused to a 20 amino acid His-tag at N-terminus & purified by proprietary chromatographic techniques.

Product Specs

Introduction
Phosphopantothenate-cysteine ligase (PPCS) is a crucial enzyme in the biosynthesis of coenzyme A (CoA), a fundamental process in both prokaryotes and eukaryotes. PPCS catalyzes the initial step in this pathway, converting pantothenic acid (vitamin B5) into CoA. Specifically, PPCS facilitates the conversion of phosphopantothenate to phosphopantothenoylcysteine.
Description
Produced in E. coli, our PPCS is a single, non-glycosylated polypeptide chain consisting of 331 amino acids (specifically, amino acids 1 to 311). It has a molecular weight of 36.1 kDa. Our PPCS is engineered with a 20 amino acid His-tag at the N-terminus to facilitate purification, which is achieved through proprietary chromatographic techniques.
Physical Appearance
Our PPCS is supplied as a sterile, colorless solution.
Formulation
Our PPCS protein solution is provided at a concentration of 1 mg/ml in a buffer consisting of 20 mM Tris-HCl at pH 8.0 and 10% glycerol.
Stability
For optimal stability, we recommend storing our Human Recombinant PPCS below -18°C. While it can remain stable at 4°C for up to one week, repeated freeze-thaw cycles should be avoided.
Purity
Our PPCS protein exhibits a purity greater than 95%, as determined by SDS-PAGE analysis.
Synonyms
Phosphopantothenate--cysteine ligase, Phosphopantothenoylcysteine synthetase, PPC synthetase, PPCS, COAB, RP11-163G10.1.
Source
Escherichia Coli.
Amino Acid Sequence
MGSSHHHHHH SSGLVPRGSH MAEMDPVAEF PQPPGAARWA EVMARFAARL GAQGRRVVLV TSGGTKVPLE ARPVRFLDNF SSGRRGATSA EAFLAAGYGV LFLYRARSAF PYAHRFPPQT WLSALRPSGP ALSGLLSLEA EENALPGFAE ALRSYQEAAA AGTFLAVEFT TLADYLHLLQ AAAQALNPLG PSAMFYLAAA VSDFYVPVSE MPEHKIQSSG GPLQITMKMV PKLLSPLVKD WAPKAFIISF KLETDPAIVI NRARKALEIY QHQVVVANIL ESRQSFVFIV TKDSETKLLL SEEEIEKGVE IEEKIVDNLQ SRHTAFIGDR N.

Q&A

What is human PPCS and what role does it play in cellular metabolism?

Human Phosphopantothenoylcysteine Synthetase (PPCS) is a critical enzyme in the coenzyme A (CoA) biosynthesis pathway. It catalyzes the second step in this essential pathway, specifically the formation of phosphopantothenoylcysteine from (R)-phosphopantothenate (PPA) and L-cysteine with the concomitant consumption of a nucleotide triphosphate. This reaction is fundamental to cellular metabolism as CoA serves as an essential cofactor for numerous metabolic reactions, including the citric acid cycle, fatty acid synthesis and oxidation, and amino acid metabolism. PPCS is encoded by the human coaB gene and functions as part of the multiprotein CoA synthase complex. Defects in PPCS function have been linked to severe metabolic disorders, including dilated cardiomyopathy, highlighting its central importance in human cellular metabolism .

What is the Predictability, Computability, and Stability (PCS) framework in human research contexts?

The Predictability, Computability, and Stability (PCS) framework represents an important methodological approach in data science that has applications across human research domains. This framework embeds scientific principles of prediction and replication in data-driven decision making while recognizing computation's central role. The PCS workflow uses predictability as a reality check for research outcomes and considers computational aspects in data collection, storage, and algorithm design. It further augments these principles with stability assessments to evaluate how human judgment impacts data results through data and model/algorithm perturbations. PCS inference procedures, including perturbation intervals and hypothesis testing, investigate result stability relative to problem formulation, data cleaning, modeling decisions, and interpretations. This framework is particularly valuable for responsible, reliable, reproducible, and transparent analysis across fields of science, social science, engineering, and medical research involving human subjects .

What kinetic mechanisms underlie human PPCS catalysis, and how can they be experimentally validated?

Human PPCS follows a Bi Uni Uni Bi Ping Pong mechanism similar to that previously described for E. faecalis PPCS. Experimentally validating this mechanism requires sophisticated enzyme kinetics approaches:

  • Reaction Order Analysis: Steady-state kinetic studies using varying concentrations of all three substrates (nucleotide, PPA, and cysteine) help establish the binding order and release of products.

  • Oxygen Transfer Studies: Experiments using [carboxyl-18O] phosphopantothenate demonstrate that the 18O from phosphopantothenate is incorporated into the AMP or CMP produced during catalysis. This confirms the formation of phosphopantothenoyl cytidylate or phosphopantothenoyl adenylate intermediates, supporting similar catalytic mechanisms under both CTP and ATP conditions.

  • Cooperativity Assessment: Hill plot analysis reveals a Hill constant of 1.7 for ATP binding, indicating cooperative binding behavior that is not observed with CTP.

The kinetic parameters determined through these methods include:

SubstrateConditionKm (μM)kcat (s-1)Notes
CTPCTP-based catalysis2650.53±0.01Non-cooperative binding
PPACTP-based catalysis570.53±0.01-
CysteineCTP-based catalysis160.53±0.01-
ATPATP-based catalysis2690.56Cooperative binding (Hill constant = 1.7)
PPAATP-based catalysis130.56-
CysteineATP-based catalysis140.56-

These detailed kinetic studies provide mechanistic insights into how human PPCS functions and can guide the development of inhibitors or activators with potential therapeutic applications .

How does the crystal structure of human PPCS complexed with P-HoPan and AMPPNP advance our understanding of its catalytic mechanism?

The crystal structure of human PPCS in complex with phosphorylated hopantenate (P-HoPan) and AMPPNP (a non-hydrolyzable ATP analog) provides critical insights into the enzyme's catalytic mechanism and substrate binding modes. This structure (PDB ID: 7EDZ) has several important research implications:

  • Substrate Binding Site Elucidation: The structure reveals precisely how the phosphopantothenate substrate (or its analog P-HoPan) binds within the active site, identifying key residues involved in substrate recognition and positioning.

  • Nucleotide Binding Mode: The co-crystallized AMPPNP demonstrates the binding mode of the activating nucleotide, clarifying how ATP interacts with the enzyme during catalysis.

  • Cysteine Binding Site Identification: Perhaps most significantly, this structure helps elucidate the previously unknown binding mode for cysteine, the third substrate in the reaction. This represents a major advance in understanding the complete catalytic mechanism.

  • Disease-Relevant Mutations: The structure provides molecular context for understanding how mutations in human PPCS linked to severe dilated cardiomyopathy affect enzyme function, by revealing their structural positions relative to catalytic and substrate-binding sites.

  • Inhibitor Design Platform: The structure serves as a crucial template for structure-based drug design efforts targeting PPCS, potentially leading to novel therapeutics for diseases involving CoA metabolism disruption.

This structural data, combined with functional analyses, demonstrates that P-HoPan forms a nonproductive substrate complex with PPCS, explaining its inhibitory mechanism and providing a framework for understanding the enzyme's catalytic cycle at atomic resolution .

What methodologies are most effective for investigating the role of PPCS in PKAN and other neurological disorders?

Investigating PPCS in Pantothenate Kinase-Associated Neurodegeneration (PKAN) and related neurological disorders requires a multi-faceted methodological approach:

  • Enzyme Kinetic Studies: Detailed characterization of PPCS activity using purified enzymes (wild-type and disease-associated variants) helps establish mechanistic understanding. The human coaB gene encoding PPCS can be cloned into expression vectors (e.g., pET23a) and overexpressed in E. coli BL21(DE3) to yield approximately 10mg of purified enzyme per liter of culture, enabling comprehensive biochemical analysis .

  • Crystal Structure Analysis: Structural studies like the 7EDZ PPCS-P-HoPan-AMPPNP complex provide critical insights into how inhibitors and disease-associated mutations affect enzyme function. These structural analyses reveal binding modes and potential mechanisms of enzyme dysfunction .

  • Cell Biology Models: PKAN cell models treated with coenzyme A pathway modulators like hopantenate (HoPan) help elucidate disease mechanisms. Recent research has shown that contrary to previous assumptions, HoPan does not directly inhibit pantothenate kinase (PanK) but rather is phosphorylated by PanK and subsequently inhibits PPCS through formation of a nonproductive substrate complex .

  • Metabolic Profiling: Comprehensive analysis of CoA-related metabolites in patient samples or model systems using liquid chromatography-mass spectrometry helps identify biomarkers and understand metabolic consequences of PPCS dysfunction.

  • Genetic Analysis: Sequencing the PPCS gene in patient cohorts with unexplained neurological symptoms similar to PKAN can identify novel disease-associated variants.

  • Imaging Studies: Advanced neuroimaging techniques in combination with biochemical analyses provide correlations between PPCS dysfunction, CoA levels, and progressive neurodegeneration.

These complementary approaches provide a comprehensive understanding of PPCS's role in neurological disorders, potentially leading to novel therapeutic strategies targeting specific steps in the CoA biosynthesis pathway .

How can oxygen transfer studies be optimized to elucidate the mechanistic details of human PPCS catalysis?

Oxygen transfer studies represent a powerful approach for investigating the mechanistic details of human PPCS catalysis. To optimize these studies for maximum insight:

  • Isotope Labeling Strategy: Use [carboxyl-18O] phosphopantothenate as the primary labeled substrate. The strategic placement of the 18O label at the carboxyl group is critical as this oxygen is involved in the formation of the phosphopantothenoyl adenylate or cytidylate intermediate.

  • Reaction Condition Optimization: Carefully control reaction conditions including pH (typically 7.0-7.5), temperature (30-37°C), and buffer composition to ensure optimal enzyme activity while maintaining stability of the isotope-labeled substrate.

  • Product Isolation Techniques: Develop efficient methods for isolating the nucleotide monophosphate products (AMP or CMP) from reaction mixtures, typically using HPLC with appropriate columns for nucleotide separation.

  • Mass Spectrometric Analysis: Employ high-resolution mass spectrometry (preferably with techniques like isotope ratio MS) to quantitatively analyze the incorporation of 18O into the AMP or CMP products. This requires careful calibration using unlabeled standards.

  • Parallel Reaction Monitoring: Conduct parallel reactions using ATP and CTP as the nucleotide substrate to compare oxygen transfer patterns between the two catalytic modes.

  • Control Reactions: Include appropriate controls such as reactions with unlabeled substrates and heat-inactivated enzyme to account for any non-enzymatic oxygen exchange.

  • Data Analysis Framework: Develop a quantitative framework for analyzing isotope incorporation data that can distinguish between different mechanistic possibilities.

These studies have successfully demonstrated that 18O from phosphopantothenate is incorporated into the AMP or CMP produced during PPCS catalysis, providing strong evidence for the formation of phosphopantothenoyl cytidylate or phosphopantothenoyl adenylate intermediates. This confirms similar catalytic mechanisms under both CTP and ATP conditions despite differences in cooperativity .

What approaches can resolve contradictory findings regarding the mechanism of HoPan inhibition in the CoA biosynthesis pathway?

Resolving contradictory findings regarding HoPan's inhibitory mechanism in the CoA biosynthesis pathway requires a comprehensive, multi-method approach:

  • Sequential Enzyme Analysis: Individually assess HoPan's effects on each enzyme in the CoA biosynthesis pathway (PanK, PPCS, PPCDC, PPAT, and DPCK) using purified enzymes and appropriate activity assays. This isolates each step to determine where inhibition occurs.

  • Metabolite Profiling: Apply metabolomics techniques to identify accumulating intermediates in HoPan-treated cells or tissues. The detection of phosphorylated HoPan and reduced levels of phosphopantothenoylcysteine would support PPCS as the primary target.

  • Structural Biology Approaches: Obtain crystal structures of PanK and PPCS in complex with HoPan or P-HoPan (as accomplished with the 7EDZ structure). Direct visualization of binding modes provides definitive evidence of interaction sites.

  • Kinetic Mechanism Determination: Perform detailed enzyme kinetic studies comparing substrate competition patterns between natural substrates and HoPan. Determine if HoPan acts as a competitive, noncompetitive, or uncompetitive inhibitor.

  • Genetic Validation: Use CRISPR-Cas9 to create cell lines with altered expression of PanK or PPCS to determine if sensitivity to HoPan correlates with expression levels of either enzyme.

  • In Cellulo Metabolic Bypass Experiments: Attempt to rescue HoPan inhibition by supplementing cells with downstream metabolites (like phosphopantothenoylcysteine). Rescue would confirm the inhibition site.

  • Domain-Specific Mutagenesis: Create targeted mutations in PPCS and PanK at putative HoPan binding sites to identify residues critical for inhibitor interaction.

Through such comprehensive approaches, researchers have resolved earlier contradictions by demonstrating that HoPan is actually phosphorylated by PanK (rather than inhibiting it) and subsequently inhibits PPCS through formation of a nonproductive substrate complex. This finding significantly revised the understanding of HoPan's mechanism of action in modulating CoA levels, particularly important for PKAN disease models .

What experimental design considerations are essential when investigating PPC (Posterior Parietal Cortex) specificity for human reach planning?

When investigating Posterior Parietal Cortex (PPC) specificity for human reach planning, several critical experimental design considerations must be addressed:

  • Precise Anatomical Targeting: The human PPC contains multiple functional subregions including superior parieto-occipital cortex (SPOC), angular gyrus (AG), and midposterior intraparietal sulcus (mIPS). Experimental designs must precisely target these specific areas using anatomical landmarks and functional localization.

  • Causal Interference Methodology: Transcranial Magnetic Stimulation (TMS) provides a powerful approach for establishing causal relationships between brain regions and functions. Online repetitive TMS (rTMS) at 10 Hz has been successfully employed to examine effector specificity in PPC subregions.

  • Task Design Considerations:

    • Include both reach and saccade conditions to test effector specificity

    • Use delayed response paradigms to separate planning from execution phases

    • Present targets across multiple spatial locations (e.g., horizontally aligned targets at varying visual angles)

    • Control for visual feedback conditions by testing in both darkness and with visual feedback

    • Include both hands to examine limb specificity

  • Performance Metrics:

    • Measure both accuracy (constant errors: signed difference between mean endpoint and target positions)

    • Assess precision (variable errors: area of 95% confidence ellipses fitted to endpoint distributions)

  • Control Conditions:

    • Include sham stimulation

    • Test multiple PPC sites to establish regional specificity

    • Control for non-specific TMS effects

  • Statistical Approach: Implement appropriate statistical designs to test for interactions between stimulation site, effector type (reach vs. saccade), visual feedback condition, and target location.

Research using these approaches has established a caudorostral gradient of effector preferences in human PPC, with SPOC showing specificity for reach planning only, while anterior-lateral parietal areas mIPS and AG are involved in encoding both saccade and reach movements. These findings extend our understanding of the neuroscience of human visuomotor transformations and highlight the importance of rigorous experimental design in establishing functional specificity in human brain regions .

What are the current limitations in understanding human PPCS and how might they be addressed in future studies?

Current research on human PPCS faces several important limitations that future studies should address:

  • Limited Structural Data on Reaction Intermediates: While the 7EDZ structure provides insights into substrate binding, structures capturing different catalytic states (particularly the phosphopantothenoyl-adenylate or cytidylate intermediates) are lacking. Future studies should aim to trap and crystallize these intermediates using substrate analogs or catalytically inactive mutants.

  • Incomplete Understanding of Regulatory Mechanisms: How PPCS activity is regulated in different physiological and pathological contexts remains poorly characterized. Future studies should investigate potential post-translational modifications, protein-protein interactions, and allosteric regulation mechanisms that may modulate PPCS function.

  • Limited In Vivo Data: Most PPCS studies rely on in vitro biochemical approaches with purified enzymes. More sophisticated in vivo models, including humanized mouse models or human cell lines with engineered PPCS variants, would provide physiologically relevant insights into PPCS function and dysfunction.

  • Therapeutic Development Challenges: Despite knowledge of PPCS's role in CoA metabolism and implications in diseases like cardiomyopathy, translating this understanding into therapeutic approaches remains challenging. Structure-guided drug design efforts should be intensified to develop specific PPCS modulators.

  • Technical Limitations in Activity Assays: Current PPCS activity assays have limitations in sensitivity and throughput. Development of more sensitive, high-throughput assays would facilitate larger-scale screening efforts and more detailed kinetic analyses.

  • Tissue-Specific Expression and Function: The tissue-specific roles of PPCS and potential isoform-specific functions remain underexplored. Future studies should investigate tissue-specific expression patterns and potential specialized roles in tissues with high metabolic demands.

  • Integration with Systems Biology: Current understanding of PPCS tends to focus on the enzyme in isolation rather than its role within broader metabolic networks. Systems biology approaches integrating transcriptomics, proteomics, and metabolomics would provide a more comprehensive understanding of PPCS in cellular metabolism.

Addressing these limitations will require interdisciplinary approaches combining structural biology, enzymology, cell biology, genetics, and systems biology to develop a more complete understanding of human PPCS in health and disease .

How might advanced data science frameworks like PCS enhance reproducibility in PPCS research?

The Predictability, Computability, and Stability (PCS) framework offers significant potential for enhancing reproducibility in PPCS enzyme research:

  • Predictability for Experimental Validation: The predictability principle can guide experimental design by establishing clear prediction tasks for PPCS research. For example, predicting how specific mutations will affect enzyme kinetics allows for direct experimental validation, creating a feedback loop that strengthens research reliability.

  • Computational Modeling Standards: PCS emphasizes computability, which can standardize approaches to PPCS structural and functional modeling. Implementing consistent computational protocols for tasks such as molecular dynamics simulations of PPCS-substrate interactions would improve cross-study comparability.

  • Stability Analysis for Experimental Conditions: The stability principle is particularly valuable for biochemical research, where small variations in experimental conditions can significantly impact results. By systematically perturbing experimental parameters (pH, temperature, buffer composition) and analyzing the stability of PPCS activity measurements, researchers can identify robust experimental protocols.

  • Documentation and Workflow Standards: PCS workflow documentation (using R Markdown or Jupyter Notebook) provides a framework for transparent reporting of data processing and analysis in PPCS research. This ensures that data transformations, statistical methods, and visualization techniques are fully documented and reproducible.

  • PCS Inference for Reliability Assessment: PCS inference procedures, including perturbation intervals and hypothesis testing, can be applied to assess the stability of PPCS research findings relative to:

    • Sample preparation variations

    • Enzyme purification methods

    • Data cleaning decisions

    • Kinetic model selection

    • Statistical analysis choices

  • Meta-Analysis Framework: The PCS approach provides a structured framework for comparing results across different PPCS studies, helping to resolve contradictions and identify sources of variability in the literature.

  • Preregistration Templates: Development of PCS-based preregistration templates specifically for PPCS enzymatic studies would reduce researcher degrees of freedom and publication bias.

Implementing the PCS framework in PPCS research would create more responsible, reliable, reproducible, and transparent results across the research lifecycle, from hypothesis generation to experimental design, data analysis, and interpretation .

How does research on human PPCS contribute to our understanding of metabolic disorders beyond PKAN?

Research on human PPCS has significant implications for understanding various metabolic disorders beyond Pantothenate Kinase-Associated Neurodegeneration (PKAN):

  • Dilated Cardiomyopathy: Recent structural analyses of human PPCS have revealed the functional implications of mutations linked to severe dilated cardiomyopathy. The 7EDZ crystal structure provides mechanistic insights into how these mutations disrupt enzyme function, potentially through altered substrate binding or catalytic efficiency. This connection establishes PPCS as a critical link between CoA metabolism and cardiac function .

  • Metabolic Syndrome Components: CoA and its derivatives are central to energy metabolism, including fatty acid oxidation and synthesis. PPCS dysfunction could contribute to dyslipidemia, insulin resistance, and other metabolic syndrome components through disrupted CoA-dependent processes. Understanding PPCS regulation may provide novel targets for metabolic disorder treatments.

  • Neurodegenerative Disorders: While PKAN directly involves pantothenate kinase, the broader role of CoA metabolism in neuronal function suggests PPCS may be relevant to other neurodegenerative conditions. Neurons have high energy demands and rely on proper CoA metabolism for mitochondrial function and neurotransmitter synthesis.

  • Cancer Metabolism: Rapidly proliferating cancer cells often exhibit altered metabolism, including changes in fatty acid synthesis and mitochondrial function. As a key enzyme in CoA biosynthesis, PPCS may represent an unexplored metabolic vulnerability in certain cancers with high CoA utilization.

  • Aging-Related Metabolic Decline: Age-related declines in mitochondrial function and metabolic efficiency may involve changes in CoA metabolism. PPCS function across the lifespan could provide insights into metabolic aspects of aging.

  • Drug-Induced Metabolic Disruptions: Understanding PPCS function and inhibition mechanisms provides a framework for evaluating how certain drugs might inadvertently affect CoA metabolism, potentially explaining some adverse metabolic effects.

  • Mitochondrial Disorders: Given CoA's central role in mitochondrial metabolism, PPCS research contributes to our understanding of primary and secondary mitochondrial disorders, potentially revealing new therapeutic approaches for these often devastating conditions.

By elucidating the structural, kinetic, and regulatory properties of human PPCS, researchers gain critical insights into CoA metabolism that extend far beyond PKAN, potentially impacting our understanding and treatment of numerous metabolic disorders .

How can researchers effectively correlate findings from PPCS structural studies with clinical manifestations of associated disorders?

Effectively correlating PPCS structural studies with clinical manifestations requires a translational research approach bridging molecular mechanisms and clinical observations:

  • Structure-Function Correlation for Disease Mutations:

    • Map known disease-associated mutations onto the high-resolution PPCS crystal structure (like 7EDZ)

    • Perform in silico analyses to predict effects on protein stability, catalytic efficiency, and substrate binding

    • Validate predictions through site-directed mutagenesis and enzymatic assays

    • Create a comprehensive database linking structural positions, biochemical effects, and clinical phenotypes

  • Development of Functional Biomarkers:

    • Design assays measuring specific metabolic intermediates affected by PPCS dysfunction

    • Correlate metabolite levels with disease severity and progression

    • Validate biomarkers in patient cohorts with different PPCS variants

  • Patient-Derived Models:

    • Generate induced pluripotent stem cells (iPSCs) from patients with PPCS mutations

    • Differentiate into relevant cell types (cardiomyocytes, neurons) for functional studies

    • Compare cellular phenotypes with biochemical and structural predictions

    • Test targeted interventions based on structural insights

  • Tissue-Specific Considerations:

    • Investigate why certain PPCS mutations predominantly affect specific tissues (e.g., heart in dilated cardiomyopathy)

    • Examine tissue-specific expression patterns and potential interaction partners

    • Analyze tissue-specific metabolic demands for CoA and its derivatives

  • Genotype-Phenotype Correlation Studies:

    • Conduct comprehensive clinical characterization of patients with PPCS variants

    • Correlate specific mutations with disease onset, progression, and response to interventions

    • Use structural data to classify mutations functionally (e.g., catalytic site vs. substrate binding vs. protein stability)

  • Therapeutic Development Pipeline:

    • Use structural insights to design targeted interventions for specific mutation types

    • Develop high-throughput screening assays based on structural knowledge

    • Test candidate compounds in patient-derived cellular models

    • Design mutation-specific therapeutic approaches

  • Multi-Omics Integration:

    • Combine structural insights with proteomics, metabolomics, and transcriptomics data

    • Create integrated models explaining how PPCS structural alterations lead to downstream metabolic and clinical effects

    • Identify potential compensatory mechanisms in different genetic backgrounds

This comprehensive approach allows researchers to establish mechanistic links between PPCS structural features and clinical manifestations, ultimately leading to more precise diagnosis, prognosis, and treatment strategies for patients with PPCS-related disorders .

What are the most promising research directions for human PPCS studies in the next five years?

The field of human PPCS research is poised for significant advances in the coming five years, with several promising research directions:

  • Structural Biology Breakthroughs: Building on the 7EDZ crystal structure, researchers will likely pursue structures of human PPCS in different conformational states, with various substrates/products, and disease-causing mutations. Cryo-EM approaches may reveal dynamic aspects of PPCS function not captured in crystal structures, particularly regarding the cooperative binding mechanism observed with ATP.

  • Systems Biology Integration: More comprehensive integration of PPCS into broader metabolic networks will emerge, with particular focus on tissue-specific CoA metabolism regulation. Multi-omics approaches will elucidate how PPCS activity influences and responds to changing metabolic states in different physiological and pathological contexts.

  • Precision Medicine Applications: Advances in understanding the molecular consequences of PPCS mutations will enable more personalized approaches to treating PPCS-related disorders. This may include mutation-specific therapies or interventions targeting specific metabolic consequences of PPCS dysfunction.

  • Novel Regulatory Mechanisms: Discovery of previously uncharacterized regulatory mechanisms controlling PPCS activity, including potential allosteric regulators, post-translational modifications, and protein-protein interactions that modulate enzyme function in response to cellular needs.

  • Therapeutic Development: Structure-guided drug design efforts will yield more specific and potent modulators of PPCS activity, potentially leading to first-in-class therapeutics for disorders involving CoA metabolism. These may include both activators and inhibitors tailored to specific clinical contexts.

  • Advanced In Vivo Models: Development of more sophisticated animal models with humanized PPCS or conditional PPCS variants will provide better platforms for understanding tissue-specific roles and testing therapeutic interventions before clinical translation.

  • Clinical Biomarker Validation: Identification and validation of PPCS-related biomarkers that reflect enzyme activity in vivo will improve diagnosis, monitoring, and treatment assessment for related disorders.

  • Synthetic Biology Applications: Engineering of PPCS variants with novel properties for biotechnology applications, potentially including production of CoA derivatives or related compounds of industrial or pharmaceutical interest.

These research directions will collectively advance our understanding of human PPCS biology while developing translational applications that address the clinical challenges associated with CoA metabolism disorders .

How can interdisciplinary collaboration enhance the impact of human PPCS research?

Interdisciplinary collaboration can significantly enhance human PPCS research impact through synergistic integration of diverse expertise and methodologies:

  • Structural Biology and Medicinal Chemistry Integration:

    • Structural biologists provide high-resolution structures of PPCS in various states

    • Medicinal chemists leverage these structures for rational drug design

    • Computational chemists conduct virtual screening and molecular dynamics simulations

    • Collaborative outcome: Structure-based development of specific PPCS modulators with therapeutic potential

  • Clinical Genetics and Biochemistry Synergy:

    • Clinical geneticists identify novel PPCS variants in patient populations

    • Biochemists characterize functional consequences of these variants

    • Bioinformaticians develop predictive algorithms for variant pathogenicity

    • Collaborative outcome: Improved diagnostic accuracy and personalized treatment approaches

  • Systems Biology and Metabolic Research Combination:

    • Systems biologists model CoA metabolism in broader metabolic networks

    • Metabolic researchers experimentally validate model predictions

    • Bioinformaticians integrate multi-omics data to refine models

    • Collaborative outcome: Comprehensive understanding of PPCS's role in metabolic regulation

  • Neuroscience and Cardiology Cross-disciplinary Approach:

    • Neurologists characterize PPCS-related neurological manifestations

    • Cardiologists document cardiac phenotypes in PPCS variant carriers

    • Basic scientists investigate tissue-specific PPCS functions

    • Collaborative outcome: Mechanistic understanding of tissue-specific disease manifestations

  • Data Science and Clinical Research Application:

    • Data scientists apply frameworks like PCS to ensure research reproducibility

    • Clinical researchers collect standardized patient data using agreed protocols

    • Biostatisticians develop appropriate analysis methods for heterogeneous data

    • Collaborative outcome: More robust, generalizable findings with clinical relevance

  • Pharmaceutical Industry and Academic Partnership:

    • Academic researchers conduct fundamental PPCS biology studies

    • Industry partners provide screening capabilities and drug development expertise

    • Regulatory experts guide translational pathway development

    • Collaborative outcome: Accelerated development of PPCS-targeted therapeutics

  • Patient Advocacy and Research Coordination:

    • Patient advocacy groups provide critical perspectives on research priorities

    • Researchers ensure studies address clinically relevant questions

    • Clinicians bridge research findings to patient care

    • Collaborative outcome: More patient-centered research with improved clinical relevance

Product Science Overview

Introduction

Phosphopantothenoylcysteine Synthetase (PPCS) is an enzyme that plays a crucial role in the biosynthesis of coenzyme A (CoA) from pantothenic acid (vitamin B5). This enzyme is essential for various metabolic pathways in both prokaryotes and eukaryotes. The human recombinant form of PPCS is particularly significant for research and therapeutic applications.

Gene and Protein Information

The PPCS gene is located on chromosome 1 (1p34.2) in humans . It encodes a protein that is involved in the second step of the CoA biosynthesis pathway. The enzyme catalyzes the conversion of 4’-phosphopantothenate and L-cysteine to 4’-phosphopantothenoylcysteine, using ATP as a cosubstrate .

Enzymatic Function

PPCS belongs to the family of ligases, specifically those forming carbon-nitrogen bonds as acid-D-amino-acid ligases (peptide synthases). The reaction it catalyzes is as follows :

NTP+(R)4phosphopantothenate+L-cysteineNMP+diphosphate+N-[(R)-4’-phosphopantothenoyl]-L-cysteine\text{NTP} + (R)-4'-phosphopantothenate + \text{L-cysteine} \rightleftharpoons \text{NMP} + \text{diphosphate} + \text{N-[(R)-4'-phosphopantothenoyl]-L-cysteine}

In humans, PPCS prefers ATP over CTP as the nucleoside triphosphate (NTP) involved in the reaction .

Biological Significance

The biosynthesis of CoA is a vital process for cellular metabolism. CoA is a cofactor that is involved in various biochemical reactions, including the synthesis and oxidation of fatty acids, and the metabolism of carbohydrates and amino acids. The role of PPCS in this pathway underscores its importance in maintaining cellular function and energy production .

Clinical Relevance

Mutations in the PPCS gene have been associated with certain diseases, such as dilated cardiomyopathy (CMD2C) and familial isolated dilated cardiomyopathy . Understanding the function and regulation of PPCS can provide insights into these conditions and potentially lead to the development of targeted therapies.

Research and Applications

Human recombinant PPCS is used in various research applications to study its structure, function, and role in metabolic pathways. It is also utilized in the development of assays and therapeutic interventions aimed at modulating CoA biosynthesis .

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