PRKCD Antibody

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Description

What is PRKCD Antibody?

PRKCD antibodies are immunoreagents designed to bind specifically to the PKCδ protein, which regulates processes such as B-cell signaling, apoptosis, and immune cell activation . These antibodies enable researchers to visualize PKCδ expression, localization, and post-translational modifications (e.g., phosphorylation at residues like T505 or Y311) in various experimental models .

Key Applications of PRKCD Antibodies

PRKCD antibodies are validated for multiple applications across species:

ApplicationDetails
Western Blot (WB)Detects PKCδ at ~77–78 kDa in lysates from human, mouse, and rat tissues .
Immunofluorescence (IF)Localizes PKCδ in cytoplasmic and membrane compartments .
Immunohistochemistry (IHC)Used to study PKCδ expression in formalin-fixed tissues (e.g., brain, colon) .
Flow CytometryAnalyzes PKCδ in immune cells, such as macrophages and dendritic cells .
Immunoprecipitation (IP)Isolates PKCδ for studying protein interactions .

Role in Immune Regulation

  • Autoimmune Disorders: Homozygous PRKCD mutations cause defective B-cell apoptosis, leading to lymphoproliferation and autoantibody production .

  • Cancer Immunology: PKCδ-deficient mice exhibit delayed tumor growth due to enhanced antigen presentation by macrophages and dendritic cells .

Mechanistic Insights

  • PKCδ phosphorylates NLRC4 to regulate inflammasome assembly .

  • Phosphorylation at T505 by upstream kinases (e.g., SRC) modulates PKCδ activity in cancer cell survival pathways .

Validation and Quality Control

PRKCD antibodies are rigorously validated:

  • Western Blot: Specific bands at ~78 kDa in human cell lines (HELA, Jurkat) .

  • Knockout Validation: Reduced signal in PRKCD−/− models confirms specificity .

  • Cross-Reactivity: Most antibodies show high homology across species (e.g., 95% human-mouse) .

Considerations for Purchasing

  • Conjugation Options: Unconjugated formats (e.g., Proteintech #84261-1-PBS) allow custom labeling .

  • Storage: Lyophilized antibodies (e.g., Boster Bio RP1058) offer long-term stability at -20°C .

  • Support: Vendors like Cell Signaling Technology provide detailed protocols and technical support .

Product Specs

Buffer
PBS with 0.02% Sodium Azide, 50% Glycerol, pH 7.3. Store at -20°C. Avoid freeze/thaw cycles.
Lead Time
Generally, we can ship the products within 1-3 business days after receiving your orders. Delivery time may vary depending on the purchase method or location. Please consult your local distributors for specific delivery times.
Synonyms
CVID9 antibody; D14Ertd420e antibody; Kinase PKC delta antibody; KPCD antibody; KPCD_HUMAN antibody; MAY 1 antibody; MAY1 antibody; MGC49908 antibody; nPKC delta antibody; nPKC-delta antibody; PCKd antibody; PKC d antibody; PKC delta antibody; PKCD antibody; PKCdelta antibody; PRKC D antibody; PRKC delta antibody; Prkcd antibody; Protein Kinase C delta antibody; Protein kinase C delta type antibody; Protein kinase C delta VIII antibody; Protein Kinase Cdelta antibody; Tyrosine protein kinase PRKCD antibody
Target Names
Uniprot No.

Target Background

Function
Protein kinase C delta (PKCδ) is a calcium-independent, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase. PKCδ plays contrasting roles in cell death and cell survival. It functions as a pro-apoptotic protein during DNA damage-induced apoptosis, but acts as an anti-apoptotic protein during cytokine receptor-initiated cell death. PKCδ is involved in tumor suppression as well as the survival of several cancers. It is required for oxygen radical production by NADPH oxidase and acts as a positive or negative regulator in platelet functional responses. PKCδ negatively regulates B cell proliferation and also has an important function in self-antigen-induced B cell tolerance induction. Upon DNA damage, PKCδ activates the promoter of the death-promoting transcription factor BCLAF1/Btf to trigger BCLAF1-mediated p53/TP53 gene transcription and apoptosis. In response to oxidative stress, PKCδ interacts with and activates CHUK/IKKA in the nucleus, causing the phosphorylation of p53/TP53. In the case of ER stress or DNA damage-induced apoptosis, PKCδ can form a complex with the tyrosine-protein kinase ABL1 which triggers apoptosis independently of p53/TP53. In the cytosol, PKCδ can trigger apoptosis by activating MAPK11 or MAPK14, inhibiting AKT1 and decreasing the level of X-linked inhibitor of apoptosis protein (XIAP), whereas in the nucleus, it induces apoptosis via the activation of MAPK8 or MAPK9. Upon ionizing radiation treatment, PKCδ is required for the activation of the apoptosis regulators BAX and BAK, which trigger the mitochondrial cell death pathway. PKCδ can phosphorylate MCL1 and target it for degradation, which is sufficient to trigger BAX activation and apoptosis. PKCδ is required for the control of cell cycle progression both at G1/S and G2/M phases. It mediates phorbol 12-myristate 13-acetate (PMA)-induced inhibition of cell cycle progression at G1/S phase by up-regulating the CDK inhibitor CDKN1A/p21 and inhibiting the cyclin CCNA2 promoter activity. In response to UV irradiation, PKCδ can phosphorylate CDK1, which is important for the G2/M DNA damage checkpoint activation. PKCδ can protect glioma cells from the apoptosis induced by TNFSF10/TRAIL, probably by inducing increased phosphorylation and subsequent activation of AKT1. PKCδ is highly expressed in a number of cancer cells and promotes cell survival and resistance against chemotherapeutic drugs by inducing cyclin D1 (CCND1) and hyperphosphorylation of RB1, and via several pro-survival pathways, including NF-kappa-B, AKT1 and MAPK1/3 (ERK1/2). PKCδ is involved in antifungal immunity by mediating phosphorylation and activation of CARD9 downstream of C-type lectin receptors activation, promoting interaction between CARD9 and BCL10, followed by activation of NF-kappa-B and MAP kinase p38 pathways. PKCδ can also act as a tumor suppressor upon mitogenic stimulation with PMA or TPA. In N-formyl-methionyl-leucyl-phenylalanine (fMLP)-treated cells, PKCδ is required for NCF1 (p47-phox) phosphorylation and activation of NADPH oxidase activity, and regulates TNF-elicited superoxide anion production in neutrophils, by direct phosphorylation and activation of NCF1 or indirectly through MAPK1/3 (ERK1/2) signaling pathways. PKCδ may also play a role in the regulation of NADPH oxidase activity in eosinophil after stimulation with IL5, leukotriene B4 or PMA. In collagen-induced platelet aggregation, PKCδ acts as a negative regulator of filopodia formation and actin polymerization by interacting with and negatively regulating VASP phosphorylation. Downstream of PAR1, PAR4 and CD36/GP4 receptors, PKCδ regulates differentially platelet dense granule secretion; it acts as a positive regulator in PAR-mediated granule secretion, whereas it negatively regulates CD36/GP4-mediated granule release. PKCδ phosphorylates MUC1 in the C-terminal and regulates the interaction between MUC1 and beta-catenin. The catalytic subunit phosphorylates 14-3-3 proteins (YWHAB, YWHAZ and YWHAH) in a sphingosine-dependent fashion. PKCδ phosphorylates ELAVL1 in response to angiotensin-2 treatment. It phosphorylates mitochondrial phospolipid scramblase 3 (PLSCR3), resulting in increased cardiolipin expression on the mitochondrial outer membrane which facilitates apoptosis. PKCδ phosphorylates SMPD1 which induces SMPD1 secretion.
Gene References Into Functions
  1. The PKC-delta isoform plays a crucial role in Tat-TLR4 signaling pathway to activate NF-kappaB and CXCL8 production. PMID: 28539656
  2. Protein kinase C-delta exhibits tumor suppressor activity. [review] PMID: 28571764
  3. Data suggest that targeted therapy and early medical intervention for protein kinase C delta (PKCdelta) could be a beneficial option for breast cancer cases complicated with type 2 diabetes mellitus (T2DM) or hyperglycemia. PMID: 29036789
  4. NSC606985 produced a dose-dependent subcellular activation of PKCdelta. The dose-dependent dual action of NSC is mediated, at least in part, through the differential subcellular activation of castration-resistant prostate cancer (CRPC) LAPC4 cells. PMID: 29048618
  5. PKC-delta expression is associated with KIT expression and the prognosis of patients with adenoid cystic carcinomas (AdCCs), suggesting that PKC-delta may be a potential therapeutic target for AdCCs. PMID: 28561935
  6. Collectively, our findings suggest that TM-PKCdelta interaction may contribute to cardiovascular disorders by affecting monocyte differentiation, which may lead to future therapeutic applications. PMID: 27910925
  7. PKC-delta played a protective role in squamous cell carcinomas partly by down-regulating p63, leading to the suppression of squamous cell carcinomas cell proliferation. PMID: 28756980
  8. Activated PKCdelta interacts with the polymerase subunit PB2 and phospho-regulates NP oligomerization and RNP assembly during Influenza A virus infection. PMID: 28758638
  9. NRF2 Ser40 phosphorylation was inhibited in Crif1-deficient bone marrow multipotent mesenchymal stromal cells even in the presence of three kinds of PKC agonists, suggesting that CRIF1 might co-activate PKC-delta to phosphorylate NRF2 Ser40. PMID: 28819452
  10. PKCdelta has an overall negative influence on platelet function in response to collagen, while, following PAR stimulation, PKCdelta has a positive effect on platelet function. PKCdelta has different roles in platelet activation, aggregation, and thrombus formation. Review. PMID: 27765273
  11. Findings unveil a negative role for PKC-delta in cell-cell adhesion through phosphorylation of E-cadherin. PMID: 27203386
  12. ADP inhibits mesothelioma cell proliferation via PKC-delta/JNK/p21/p27 signaling. PMID: 28777435
  13. PKCdelta, via MAPK pathway, is involved in the glycodelin-driven cell differentiation. PMID: 27373413
  14. PKCdelta is a critical regulator of signaling mechanisms of neutrophil-endothelium interaction in acute inflammation. Inhibition of PKCdelta in human endothelial cells and neutrophils reduced chemoattractant-induced neutrophil migration across TNF-alpha-activated endothelium, and reduced expression of E-selectin and ICAM-1. Shear rate and vascular geometry regulate the impact of PKCdelta inhibition of neutrophil-endot... PMID: 27190303
  15. Lysophosphatidylcholines prime polymorphonuclear neutrophil through Hck-dependent activation of PKCdelta, which stimulates PKCgamma, resulting in translocation of phosphorylated p47(phox). PMID: 27531930
  16. Amphiregulin enhances VEGF-A production in human chondrosarcoma cells and promotes angiogenesis by inhibiting miR-206 via FAK/c-Src/PKCdelta pathway. PMID: 27826039
  17. In the present investigation, we demonstrated that miR486 is negatively associated with the expression of PKC-delta and could regulate the development of osteosarcoma. miR-486 may be a potential target for the treatment of osteosarcoma. PMID: 28339053
  18. PKCdelta and PKCepsilon work as a functional couple with opposite roles on thrombopoiesis, and the modulation of their balance strongly impacts platelet production. PMID: 27081176
  19. These findings suggest that targeting Wnt/beta-catenin or Akt pathways may increase the efficacy of taxane chemotherapy in advanced human prostate cancers that have lost PKCdelta expression. PMID: 27196755
  20. Description of a rare monogenic form of juvenile systemic lupus erythematosus caused by a novel but damaging homozygous mutation affecting the active region of PRKCD. PMID: 28003329
  21. MALAT1 recruits splice factor serine-arginine-rich splice factor 2 (SRSF2) to promote alternative splicing of PKCdeltaII. PMID: 27841943
  22. Mechanistic studies indicate that inhibition of SRC and PKCdelta completely ablated the ability of MDA-7/IL-24 to reduce the Bcl-x(L)/(s) mRNA ratio and cell viability. These findings show that Bcl-x(s) expression is an important mediator of MDA-7/IL-24-induced cytotoxicity requiring the SRC/PKCdelta signaling axis in NSCLC cells. PMID: 27519412
  23. Upregulation of miR-940 may function as a suppressor in the progression of ovarian cancer by inhibiting cell proliferation and inducing apoptosis by targeting PKC-delta. This study may provide a basis for the possible application of miR-940 in illustrating the molecular pathogenic mechanism of ovarian cancer. PMID: 28081739
  24. The results showed that a repressor complex composed of NFX1-91, mSin3A and histone deacetylase 1 was involved in the PKC-delta-induced repression of the hTERT promoter, which resulted in the repression of hTERT transcription. PMID: 27311997
  25. Knockdown of PKCdelta results in a reduction of HIF-1alpha mRNA levels. PMID: 26284819
  26. Study shows that PRKCD influences corticotroph cell viability, POMC and ACTH expression suggesting that PRKCD plays an important role in restraining corticotroph cell proliferation and function. PMID: 26522132
  27. PKCzeta Promotes Breast Cancer Invasion by Regulating Expression of E-cadherin and Zonula Occludens-1 (ZO-1) via NFkappaB-p65 PMID: 26218882
  28. Persistent PRKCD elevation in fibroblasts from diabetic patients inhibits insulin signaling and function to impair wound healing. PMID: 26808499
  29. Data suggest that cytokines (TNF-alpha, IL1-beta, IFN-gamma) disrupt gap junction coupling in pancreatic islets under conditions associated with prediabetes; the mechanism appears to involve nitric oxide-mediated activation of protein kinase C-delta. PMID: 26668311
  30. Phosphorylation site at Ser130 adjacent to the pseudosubstrate domain contributes to the activation of protein kinase. PMID: 26546672
  31. Docosahexaenoic acid increases the efficacy of docetaxel in mammary cancer cells by downregulating Akt and PKCepsilon/delta-induced ERK pathways. PMID: 26821209
  32. K-Ras stabilization by estrogen via PKCdelta has a role in endometrial tumorigenesis. PMID: 26015399
  33. PKC-delta is a crucial factor in the heat sensitivity and thermal resistance of tongue squamous carcinoma cells. PMID: 26017369
  34. Study shows selective phosphorylation of PKCdelta in HTLV1-infected T cells where Tax activates NFkappaB through PKCdelta activation. PMID: 25625567
  35. Results show that PKCdelta acts as a critical regulator for the maintenance of tumor initiating cells in glioblastoma through specific phosphorylation on Ser473 of AKT, therefore activating its signaling pathway. PMID: 25746003
  36. Isotype delta-PKC is responsible for myristoylated alanine-rich C-kinase substrate (MARCKS) phosphorylation in human neutrophils following f-Met-Leu-Phe stimulation and MARCKS phosphorylation is essential for neutrophil migration and adhesion. PMID: 25515270
  37. This report suggests a novel finding that cellular signaling caspase 3/7-PKCdelta-Akt/p38 MAPK is crucial to the repopulation in Panc1 cells after radiotherapy. PMID: 25156550
  38. Results suggest that miR-224-5p may function as an oncogene and induce platinum resistance in ovarian papillary serous carcinoma at least in part by downregulating PRKCD. PMID: 25017423
  39. The Epstein-Barr virus LMP1-induced IL-32 traps protein kinase Cdelta in the cytoplasm and prevents it from binding to the Zta promoter, which is the key event for virus activation. PMID: 25810549
  40. Studies identify a C2 domain pTyr313 docking interaction that controls ATP-positioning loop phosphorylation as a novel, dynamically regulated, and physiologically relevant structural determinant of PKCdelta catalytic activity. PMID: 25755284
  41. IL-32theta;, through its interaction with PKCdelta, downregulates CCL5 expression by mediating the phosphorylation of STAT3 on Ser727 to render it transcriptionally inactive. PMID: 25280942
  42. PKC-mediated syndecan-1 downregulation causes loss of cell invasiveness in melanoma cells under anchorage independency. PMID: 25236603
  43. Docking and physicochemical studies indicated that BTK was involved in close contact with Tyr86 and Tyr106 of MAL, whereas PKCdelta may phosphorylate Tyr106 only. PMID: 24840642
  44. Suggest a distinct role of PKCdelta in controlling cell fate and immune response of monocyte subsets. PMID: 25322815
  45. Our data demonstrate that FZD1 regulates PKCdelta, and the PKCdelta/AP-1 signaling transduction pathway plays an important role in drug resistance in MES-SA/Dx5 cells. PMID: 24814288
  46. There is a PRKCD-dependent proapoptotic mechanism controlling stability of HAX-1, a proto-oncogene in mantle cell lymphoma. PMID: 25419709
  47. Histone acetylation regulates PKCdelta expression to augment nigrostriatal dopaminergic cell death, which could contribute to the progressive neuropathogenesis of Parkinson disease. PMID: 25342743
  48. High glucose increased protein kinase C delta phosphorylation. PMID: 24289563
  49. Trp-252 of PRKCD contributes to diacylglycerol affinity. PMID: 25124034
  50. PKCdelta protein levels were decreased in the putamen of Huntington's disease patients. PMID: 23896721

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Database Links

HGNC: 9399

OMIM: 176977

KEGG: hsa:5580

STRING: 9606.ENSP00000331602

UniGene: Hs.155342

Involvement In Disease
Autoimmune lymphoproliferative syndrome 3 (ALPS3)
Protein Families
Protein kinase superfamily, AGC Ser/Thr protein kinase family, PKC subfamily
Subcellular Location
Cytoplasm. Cytoplasm, perinuclear region. Nucleus. Cell membrane; Peripheral membrane protein. Mitochondrion. Endomembrane system.

Q&A

What is PRKCD and why is it important in scientific research?

PRKCD (Protein Kinase C Delta) is a member of the PKC family of serine/threonine kinases that is activated intracellularly by signal transduction pathways . In humans, at least 12 different PKC polypeptides have been identified, with PRKCD being particularly significant due to its distinctive roles in cellular processes . PRKCD is critically involved in B and T cell activation and cytokine production, making it a vital component in mechanisms underlying autoimmune disease development .

Research importance stems from PRKCD's role in multiple biological pathways including immune function regulation, where loss-of-function mutations cause a syndrome characterized by chronic benign lymphadenopathy, positive autoantibodies, and NK dysfunction . Additionally, PRKCD has emerged as a significant research target in cancer biology, with studies showing PRKCD deficiency can delay tumor growth in multiple cancer models .

What are the key characteristics of PRKCD antibodies used in research?

Research-grade PRKCD antibodies typically target the protein kinase C delta type with high specificity. For example, monoclonal antibodies like the 10F11B clone recognize human, mouse, and rat PRKCD . These antibodies have a molecular weight target of approximately 77.5 kDa corresponding to the PRKCD protein .

Key characteristics include:

FeatureDescriptionSignificance in Research
SpecificityCross-reactivity with human, mouse, and rat PRKCDEnables comparative studies across species models
ApplicationsWestern Blot (1:500), ELISA (1:1000), IHC (1:50)Versatility across multiple experimental approaches
ImmunogenRecombinant proteinEnsures targeted specificity to PRKCD
Storage Requirements-80°CCritical for maintaining antibody integrity
Tissue DistributionHighly localized in specific regions (e.g., granular cell layer of cerebellum)Important for neuroscience and tissue-specific research

These characteristics make PRKCD antibodies valuable tools for investigating protein expression, localization, and function across multiple experimental platforms.

What experimental applications are PRKCD antibodies most commonly used for?

PRKCD antibodies are employed across diverse experimental applications, each providing unique insights into protein function and expression. Common applications include:

  • Western Blot Analysis: Used at 1:500 dilution to detect PRKCD protein expression levels in cell or tissue lysates . This application is particularly valuable for quantifying relative protein levels and identifying post-translational modifications.

  • Immunohistochemistry (IHC): Applied at 1:50 dilution to visualize PRKCD distribution in tissue sections . IHC has revealed that PRKCD is highly localized in specific regions such as the granular cell layer of cerebellum, providing insights into its tissue-specific functions.

  • ELISA: Utilized at 1:1000 dilution for quantitative detection of PRKCD in solution . This application is particularly useful for measuring PRKCD in serum or cell culture supernatants.

  • Gene Expression Analysis: While not directly using antibodies, research frequently pairs antibody-based protein detection with gene expression analysis of PRKCD using real-time PCR with specific Taqman probes . This combination provides comprehensive understanding of both transcriptional and translational regulation.

  • Flow Cytometry: Used to identify PRKCD expression in specific immune cell populations, enabling researchers to correlate expression with functional phenotypes in complex tissues like tumors .

How should researchers design experiments to investigate PRKCD's role in autoimmune disorders?

Investigating PRKCD's role in autoimmune disorders requires a multifaceted experimental approach that integrates genetic, protein, and functional analyses. Based on current research methodologies, the following experimental design is recommended:

  • Genetic Association Studies: Design case-control studies with sufficiently large cohorts (e.g., the 912 patients and 878 controls used in VKH disease research) . Use MassARRAY systems for genotyping polymorphisms within the PRKCD gene and assess linkage disequilibrium (LD) through platforms like SHEsis .

  • Haplotype Analysis: Analyze haplotypes to identify genetic variants with significant disease associations. For example, research has shown that the frequency of the PRKCD ATG haplotype in patients with VKH was significantly lower than in controls (Pc = 3.11 × 10^-3, OR = 0.594) .

  • Gene Expression Analysis:

    • Extract total RNA from PBMCs or cell lines using validated kits (e.g., RNeasy plus mini Kit)

    • Perform reverse transcription with standardized protocols (e.g., iScript cDNA synthesis kit)

    • Quantify PRKCD expression by real-time PCR using appropriate endogenous controls like GAPDH

    • Calculate relative expression using the comparative Ct method: ΔCt = Ct of PRKCD − Ct of GAPDH

  • In Vivo Model Systems: Utilize PRKCD knockout mouse models to assess phenotypic manifestations. Studies have demonstrated that PRKCD-deficient mice exhibit enhanced humoral immune responses, increased IgM levels, increased NK cell numbers, and increased susceptibility to induced colitis .

  • Immune Cell Profiling: Analyze B cell subsets, T cell activation, and cytokine production in PRKCD-deficient versus wild-type systems to characterize immune dysregulation patterns .

What are the critical considerations when interpreting contradictory PRKCD antibody results in cancer research?

When faced with contradictory PRKCD antibody results in cancer research, researchers should consider several critical factors that might explain the discrepancies:

  • Cancer Type-Specific Effects: Research demonstrates that PRKCD deficiency significantly delayed tumor growth in E0771 (breast) and LLC (lung) cancer models but showed less significant effects in B16F10 (melanoma) models . This variation correlates with differences in mononuclear phagocyte (MP) infiltration - E0771 and LLC tumors showed substantial MP infiltration (27.85% and 35.79% of viable cells), while B16F10 tumors had minimal infiltration (1.59%) . When contradictory results emerge, analyze MP content as a potential explanatory variable.

  • Genetic Background Considerations: Phenotypes in PRKCD studies are influenced by the genetic background of models. For instance, PRKCD knockout phenotypes differ between studies using pure C57BL/6J backgrounds versus mixed backgrounds involving 129P2/OlaHsd strains . Document and consider genetic background when comparing results across studies.

  • Antibody Specificity and Application Parameters:

    • Verify antibody clone specificity and optimal dilutions (e.g., 1:500 for Western blot versus 1:50 for IHC)

    • Confirm appropriate positive and negative controls are included

    • Validate critical findings with multiple antibody clones or detection methods

  • Model-Specific Immune Microenvironment: PRKCD knockout models show increased T cell activation (IFN-γ+TNFα+) and elevated CD8+ T cell content in certain tumor models . Contradictory results may reflect differences in the immune microenvironment rather than direct PRKCD functions.

  • Gene-Protein Expression Correlation: Discrepancies may arise from disconnects between gene and protein expression. Verify results using both transcript analysis (qPCR) and protein detection methods (Western blot, IHC) .

How does PRKCD's role differ across immune cell subsets, and what methodological approaches best capture these differences?

PRKCD exhibits distinct functional roles across immune cell subsets, necessitating specialized methodological approaches to accurately characterize these differences:

  • B Cell Function Analysis:

    • PRKCD deficiency leads to increased B cell proliferation, elevated follicular, marginal zone, and transitional B cell numbers, and abnormal plasma cell differentiation

    • Recommended methodology: Flow cytometry with B cell subset markers (CD19, CD21, CD23, CD24, IgM, IgD) combined with proliferation assays (Ki67 or BrdU incorporation)

    • Functional assessment: Measure immunoglobulin production (especially IgA, IgG1, and IgM) using ELISA to quantify abnormal antibody responses

  • T Cell Activation and Function:

    • PRKCD deficiency enhances T cell activation and increases CD8+ T cell infiltration and activation (IFN-γ+TNFα+) in tumor models

    • Methodology: Multiparameter flow cytometry with activation markers (CD69, CD25, PD-1) and intracellular cytokine staining following ex vivo stimulation

    • Include co-culture experiments with PRKCD-deficient antigen-presenting cells to assess indirect effects on T cell function

  • Mononuclear Phagocyte Characterization:

    • PRKCD regulates antigen presentation capacity and polarization of mononuclear phagocytes

    • Methodology: Flow cytometry analysis of MHC-II and co-stimulatory molecule expression (CD80, CD86) on macrophages and dendritic cells

    • Single-cell RNA sequencing to identify transcriptional programs regulated by PRKCD in specific MP subsets

    • Assess phagocytosis capacity and cytokine production profiles

  • NK Cell Analysis:

    • PRKCD deficiency causes NK cell dysfunction and increased NK cell numbers

    • Methodology: Flow cytometry-based cytotoxicity assays against standard target cells (K562)

    • Analysis of activating and inhibitory receptor expression profiles

    • Degranulation assays measuring CD107a surface expression following stimulation

  • Integrated Multi-Omics Approach:

    • Combine protein-level detection (antibody-based) with transcriptomic analysis (RNA-seq) and epigenetic profiling

    • Single-cell technologies to delineate cell-specific effects within heterogeneous populations

    • Computational integration of datasets to identify cell-specific regulatory networks

What are the optimal conditions for PRKCD antibody use in Western blotting and immunohistochemistry?

Optimizing conditions for PRKCD antibody applications requires attention to specific technical parameters for each method:

Western Blotting Optimization:

  • Sample Preparation:

    • Use fresh tissue/cell lysates with complete protease inhibitor cocktails

    • Standardize protein loading (20-50μg total protein per lane)

    • Include both reducing and non-reducing conditions to account for structural epitopes

  • Antibody Parameters:

    • Optimal dilution: 1:500 for most monoclonal PRKCD antibodies

    • Incubation: Overnight at 4°C with gentle agitation

    • Secondary antibody: HRP-conjugated anti-mouse IgG at 1:2000-1:5000 dilution

  • Detection Considerations:

    • Enhanced chemiluminescence (ECL) provides sufficient sensitivity

    • Expected molecular weight: 77.5 kDa for full-length PRKCD

    • Include positive controls (e.g., cell lines known to express PRKCD)

    • Negative controls should include PRKCD knockout cells where available

Immunohistochemistry Optimization:

  • Tissue Preparation:

    • Formalin-fixed paraffin-embedded or frozen sections (10μm thickness)

    • Antigen retrieval: Microwave method in citrate buffer (pH 6.0)

  • Staining Protocol:

    • Blocking: 3% goat serum with 1% Triton X-100 in PBS

    • Primary antibody: 1:50 dilution with overnight incubation

    • Secondary antibody: 1:2000 dilution with overnight incubation

    • Counterstain: Neuron-specific markers (e.g., NeuN at 1:200) for co-localization studies

  • Validation Controls:

    • Positive control: Cerebellum sections showing granular cell layer localization

    • Negative control: Primary antibody omission and PRKCD knockout tissue

    • Isotype control: Non-specific mouse IgG at equivalent concentration

How can researchers effectively validate PRKCD knockdown or knockout models for functional studies?

Effective validation of PRKCD knockdown or knockout models requires a comprehensive approach combining molecular, protein, and functional verification:

Molecular Validation:

  • Genotyping:

    • Design PCR primers flanking targeted region (deletion, insertion, or point mutation)

    • Sequence verification of the targeted modification

    • Analysis of potential off-target modifications using whole genome sequencing

  • Transcript Analysis:

    • Real-time PCR using PRKCD-specific Taqman probes

    • Calculate relative expression using the ΔΔCt method with GAPDH as endogenous control

    • RNA-seq to assess global transcriptional changes and confirm PRKCD reduction

Protein Validation:

  • Western Blot Verification:

    • Antibody: Anti-PRKCD clone 10F11B at 1:500 dilution

    • Quantitative analysis comparing band intensity to wild-type controls

    • Assess potential compensatory upregulation of other PKC isoforms

  • Immunohistochemistry/Immunofluorescence:

    • Confirm absence/reduction of PRKCD in relevant tissues

    • Analyze subcellular localization patterns in partial knockdown models

Functional Validation:

  • Immune Phenotyping:

    • Flow cytometry analysis of lymphocyte populations with emphasis on:

      • B cell subsets (increased B cell numbers expected)

      • NK cell numbers (typically increased)

      • T cell activation markers

  • Immunoglobulin Production:

    • ELISA measurement of serum immunoglobulins

    • Expected phenotype: Increased IgA, IgG1, and IgM levels

  • Disease Susceptibility Models:

    • Colitis induction (increased susceptibility expected)

    • Autoimmune models (enhanced autoantibody production)

    • Tumor implantation models (delayed growth in certain cancer types)

  • Signaling Pathway Analysis:

    • Phospho-protein analysis of downstream targets

    • Analysis of interferon signaling activation (expected to be enhanced)

What technical challenges exist when measuring PRKCD expression in primary human samples versus cell lines?

Researchers face distinct technical challenges when analyzing PRKCD expression in primary human samples compared to established cell lines:

Primary Human Sample Challenges:

  • Sample Heterogeneity:

    • Primary tissues contain mixed cell populations with variable PRKCD expression

    • Solution: Single-cell approaches (flow cytometry, single-cell RNA-seq) or cell isolation techniques prior to analysis

    • Laser capture microdissection for tissue-specific analysis

  • Limited Material Availability:

    • Clinical samples often provide restricted quantities for analysis

    • Strategy: Optimize protocols for small sample inputs (micro-Western techniques, high-sensitivity qPCR)

    • Consider multiplexed approaches to maximize data from limited material

  • Preservation and Processing Effects:

    • PRKCD protein epitopes may be altered by fixation procedures

    • Recommendation: Compare fresh-frozen versus formalin-fixed samples when establishing protocols

    • Optimize antigen retrieval methods (microwave method with 3% goat serum 1% Triton-X100 in PBS )

  • Inter-individual Variability:

    • Genetic polymorphisms in PRKCD may affect antibody binding or expression levels

    • Approach: Include multiple donor samples and consider genotyping relevant PRKCD polymorphisms

    • Establish normal expression ranges across population samples

Cell Line Considerations:

  • Artificial Expression Levels:

    • Cell lines may exhibit non-physiological PRKCD expression levels

    • Validation: Compare expression to relevant primary cells

    • Use multiple cell line models representing the tissue/disease of interest

  • Culture Condition Effects:

    • PRKCD expression and activity are influenced by culture conditions

    • Standardization: Maintain consistent passage numbers, confluence levels, and serum conditions

    • Document precise culture conditions in publication methods

  • Authentication Requirements:

    • Ensure cell line identity and absence of contamination

    • Regular STR profiling and mycoplasma testing

    • Use early passage cells when possible

Comparative Analysis Framework:

ParameterPrimary SamplesCell LinesTechnical Recommendation
Sample processingImmediate preservation criticalMore flexible timeframeProcess primary samples within 1-2 hours of collection
Protein extractionVariable efficiencyConsistent yieldOptimize lysis buffers for specific tissue types
Western blot loadingStandardize to housekeeping proteinsTotal protein normalization viableUse both normalization methods for cross-validation
IHC/IF analysisComplex tissue architectureMonolayer simplicityInclude tissue-specific positive controls with primary samples
RNA qualityOften degraded (RIN scores <7)Typically high qualityInclude RNA integrity assessment for all samples

How does PRKCD function in tumor microenvironments, and what techniques best analyze its role in cancer progression?

PRKCD plays complex roles in tumor microenvironments, functioning differently across various cancer types and immune cell populations. Understanding these interactions requires specialized techniques:

PRKCD Functions in Tumor Microenvironments:

  • Immune Cell Regulation:

    • PRKCD regulates mononuclear phagocytes (MPs) and influences anti-tumor immunity

    • PRKCD deficiency results in enhanced T cell activation (IFN-γ+TNFα+) and increased CD8+ T cell infiltration in tumors

    • Gene Ontology analysis of PRKCD-deficient tumors shows upregulation of genes involved in T cell activation, IFN-γ signaling, and antigen presentation

  • Cancer Type-Specific Effects:

    • PRKCD deficiency significantly delays tumor growth in MP-rich tumors (E0771 breast cancer, LLC lung cancer) but has less effect in MP-poor tumors (B16F10 melanoma)

    • This correlation with MP infiltration suggests PRKCD primarily regulates tumor progression through its effects on MPs

  • Signaling Pathway Modulation:

    • PKCδ deficiency reprograms MPs by activating type I and type II interferon signaling

    • This reprogramming enhances antigen presentation and T cell activation within tumors

Optimal Analytical Techniques:

  • Tumor Immune Microenvironment Profiling:

    • Multiparameter flow cytometry to quantify and phenotype immune cell populations

    • Panel should include markers for:

      • MPs (F4/80, CD11b, Ly6C, CD11c)

      • T cells (CD3, CD4, CD8, activation markers like PD-1)

      • Functional markers (IFN-γ, TNFα)

  • Spatial Analysis Methods:

    • Multiplex immunohistochemistry or immunofluorescence to visualize PRKCD expression relative to other cell types

    • Digital spatial profiling to quantify protein expression with spatial context

    • Single-cell spatial transcriptomics to map gene expression programs

  • Functional Assessment Approaches:

    • In vivo cell depletion studies (e.g., MP depletion alters tumor growth in control but not PRKCD-deficient mice)

    • Co-injection experiments with PRKCD-deficient versus wild-type immune cells

    • Immune checkpoint blockade response analysis in PRKCD-proficient versus deficient settings

  • Molecular Pathway Analysis:

    • RNA-seq and GSEA to identify enriched pathways (e.g., T cell activation, antigen processing/presentation, innate immune response)

    • Phospho-protein analysis of downstream signaling targets

    • ChIP-seq to identify direct transcriptional targets regulated by PRKCD signaling

What are the current methodological gaps in understanding PRKCD's role in autoimmune pathogenesis?

Despite significant advances, several methodological gaps remain in fully understanding PRKCD's role in autoimmune pathogenesis:

How can researchers integrate genomic, transcriptomic, and proteomic data to better understand PRKCD biology?

Integrating multi-omics data provides a comprehensive understanding of PRKCD biology that single-platform approaches cannot achieve. The following methodological framework optimizes multi-omics integration:

Data Generation and Quality Control:

  • Genomic Analysis:

    • Genotype PRKCD polymorphisms (e.g., rs2306572, rs74437127, rs45596236)

    • Assess linkage disequilibrium patterns using platforms like SHEsis

    • Include haplotype analysis to identify functional genetic variants

    • Quality control: Ensure >95% call rates and Hardy-Weinberg equilibrium

  • Transcriptomic Approaches:

    • RNA-seq with sufficient depth (>20M reads) for comprehensive coverage

    • Consider specialized approaches:

      • Single-cell RNA-seq to capture cellular heterogeneity

      • Targeted RNA-seq for focused PRKCD pathway analysis

    • Validation: Confirm key findings with qRT-PCR using standardized protocols

  • Proteomic Methods:

    • Mass spectrometry-based proteomics for unbiased protein quantification

    • Antibody-based approaches (Western blot, ELISA) for targeted validation

    • Phospho-proteomics to capture PRKCD-dependent signaling cascades

    • Quality metrics: >70% proteome coverage, <20% missing values

Integration Strategies:

  • Correlation Analysis Framework:

    • Perform eQTL (expression quantitative trait loci) analysis to link PRKCD genetic variants to expression changes

    • Protein-QTL analysis to connect genomic variation to protein abundance

    • Develop multi-level correlation matrices across data types

  • Pathway-Centric Integration:

    • Map all data types to common pathway frameworks (KEGG, Reactome)

    • Identify convergent pathways affected across multiple data types

    • Example application: Gene Ontology analysis of PRKCD-deficient tumors revealed enhanced immunostimulatory responses across multiple pathways

  • Network Biology Approaches:

    • Construct protein-protein interaction networks centered on PRKCD

    • Integrate transcriptional regulatory networks

    • Identify network modules with coordinated responses across omics layers

  • Advanced Computational Methods:

    • Machine learning algorithms for feature selection across multi-omics datasets

    • Bayesian network modeling to infer causal relationships

    • Multi-omics factor analysis (MOFA) to identify sources of variation

Biological Validation Framework:

  • In Vitro Validation:

    • CRISPR-based modification of key nodes identified in multi-omics analysis

    • Measure functional outcomes (e.g., cytokine production, cell proliferation)

  • In Vivo Model Systems:

    • PRKCD knockout models exhibit well-characterized phenotypes that can validate predictions

    • Compare observed phenotypes (e.g., increased IgM levels, enhanced humoral immune response) with multi-omics predictions

  • Translational Relevance:

    • Correlate integrated findings with human disease associations

    • Example: PRKCD polymorphisms associated with VKH disease can be integrated with transcriptomic and proteomic data to understand functional consequences

How should researchers approach data analysis when comparing PRKCD expression across different experimental models?

Comparing PRKCD expression across different experimental models requires careful consideration of several methodological factors to ensure valid comparisons:

Normalization Strategies:

  • Western Blot Analysis:

    • Normalize PRKCD to housekeeping proteins (GAPDH, β-actin) for within-model comparisons

    • For cross-model comparisons, use total protein normalization methods (Ponceau S, REVERT total protein stain)

    • Include common reference samples across all blots to enable inter-blot normalization

  • Gene Expression Analysis:

    • For qPCR, use the ΔΔCt method with stable reference genes: ΔCt = Ct of PRKCD − Ct of GAPDH

    • Verify reference gene stability across experimental conditions

    • For cross-platform comparisons (e.g., microarray vs. RNA-seq), use batch correction algorithms

  • Immunohistochemical Quantification:

    • Use digital image analysis with standardized thresholds

    • Include serial dilution standards on each slide for internal calibration

    • Report data as H-scores or other semi-quantitative metrics for cross-study comparisons

Statistical Considerations:

  • Appropriate Statistical Tests:

    • Parametric vs. non-parametric testing based on data distribution

    • Account for multiple comparisons when analyzing multiple models

    • Include power calculations to ensure adequate sample sizes

  • Variability Assessment:

    • Report both biological and technical variability

    • Use mixed-effects models to account for nested designs

    • Include violin or box plots rather than bar graphs to show data distribution

  • Effect Size Reporting:

    • Calculate standardized effect sizes for meaningful cross-model comparisons

    • Report confidence intervals around estimates

    • Consider Bayesian approaches for small sample sizes

Model-Specific Considerations:

  • Cell Line Comparisons:

    • Account for different baseline PRKCD expression levels

    • Document passage number and culture conditions

    • Consider normalization to cell type-specific reference genes

  • Animal Model Comparisons:

    • Account for strain background differences (e.g., C57BL/6J vs. mixed backgrounds)

    • Control for age, sex, and environmental conditions

    • Consider tissue-specific reference ranges for PRKCD expression

  • Human Sample Comparisons:

    • Stratify by relevant demographics and clinical parameters

    • Account for medication effects and comorbidities

    • Consider genetic variation in the PRKCD gene itself

Integrative Analysis Framework:

Analysis LevelMethodsKey Considerations
Within modelPaired t-tests, repeated measures ANOVAControl for batch effects
Between models, same speciesIndependent t-tests, one-way ANOVA with post-hoc testsMatch experimental conditions closely
Cross-species comparisonMeta-analysis approaches, standardized effect sizesFocus on conserved functions/pathways
Multi-platform integrationCorrelation analysis, principal component analysisEnsure comparable data preprocessing

What emerging technologies are advancing our understanding of PRKCD biology in immune regulation?

The field of PRKCD research is rapidly evolving with several emerging technologies offering unprecedented insights into its functions in immune regulation:

  • CRISPR-Based Functional Genomics:

    • CRISPR activation/inhibition systems allow tunable modulation of PRKCD expression

    • CRISPR screens can identify novel interaction partners and regulatory pathways

    • Base editing technologies enable precise modification of PRKCD regulatory elements

    • Functional relevance: These approaches help dissect the specific contributions of PRKCD domains to immune cell function

  • Single-Cell Multi-Omics:

    • Combined single-cell RNA-seq and ATAC-seq reveals transcriptional and epigenetic regulation

    • CITE-seq (cellular indexing of transcriptomes and epitopes) links PRKCD protein expression to transcriptional states

    • Spatial transcriptomics maps PRKCD expression patterns within tissue microenvironments

    • Research application: These technologies have revealed that PRKCD regulates specific mononuclear phagocyte subsets with distinct transcriptional programs

  • Advanced Protein Interaction Mapping:

    • Proximity labeling methods (BioID, APEX) identify spatial protein interactions

    • Hydrogen-deuterium exchange mass spectrometry reveals structural dynamics

    • Interactome mapping under different activation states

    • Biological insight: These approaches can identify how PRKCD interacts with different signaling complexes in various immune cell types

  • Intravital Imaging Technologies:

    • Two-photon microscopy with fluorescent PRKCD reporters tracks activation in vivo

    • Optogenetic control of PRKCD activation with spatiotemporal precision

    • Functional biosensors monitor PRKCD activity in living cells and organisms

    • Application: These methods reveal dynamic PRKCD activation patterns during immune cell interactions

  • Systems Immunology Approaches:

    • Machine learning algorithms identify patterns in complex PRKCD-dependent immune responses

    • Network analysis tools map PRKCD within broader signaling networks

    • Multi-scale modeling integrates molecular, cellular, and organismal data

    • Research impact: These computational approaches have helped identify how PRKCD participates in immune regulatory networks in cancer and autoimmunity

What are the most promising therapeutic directions targeting PRKCD for autoimmune and cancer applications?

PRKCD's dual roles in autoimmunity and cancer biology position it as an intriguing therapeutic target with several promising directions emerging:

Autoimmune Disease Applications:

  • Selective PRKCD Modulators:

    • Rationale: PRKCD mutations cause autoimmune syndromes characterized by lymphadenopathy and autoantibody production

    • Approach: Develop small molecule inhibitors with enhanced selectivity for PRKCD over other PKC isoforms

    • Potential benefit: Targeted inhibition could reduce B cell hyperactivation and autoantibody production

    • Supporting evidence: PRKCD-deficient mice show increased B cell proliferation and abnormal immunoglobulin production

  • B Cell-Targeted PRKCD Modulation:

    • Rationale: PRKCD deficiency specifically affects B cell homeostasis and function

    • Approach: Cell type-specific delivery systems (e.g., CD19-targeted nanoparticles containing PRKCD activators)

    • Advantage: Minimizes off-target effects in other cell types where PRKCD inhibition might be detrimental

    • Research basis: PRKCD knockout mice show increased follicular, marginal zone, and transitional B cell numbers

  • Combination Therapies:

    • Strategy: Pair PRKCD modulators with existing immunosuppressants at lower doses

    • Benefit: Potentially reduces side effects while maintaining efficacy

    • Experimental support: PRKCD's role in multiple immune pathways suggests synergistic potential with targeted therapies

Cancer Immunotherapy Applications:

  • MP-Targeted PRKCD Inhibition:

    • Scientific rationale: PRKCD deficiency reprograms mononuclear phagocytes toward anti-tumor functions

    • Approach: Develop myeloid-targeted delivery of PRKCD inhibitors

    • Expected outcome: Enhanced T cell activation and anti-tumor immunity

    • Supporting evidence: PRKCD-deficient mice show delayed tumor growth in MP-rich tumor models

  • Immune Checkpoint Blockade Combination:

    • Strategy: Combine PRKCD inhibitors with anti-PD-1/PD-L1 therapy

    • Mechanistic basis: PRKCD deficiency increases T cell activation and PD-1+ CD8+ T cells in tumors

    • Potential advantage: May convert "cold" tumors to "hot" immunologically responsive tumors

    • Research foundation: Gene expression analysis shows PRKCD deficiency enhances pathways involved in antigen presentation and T cell activation

  • Cancer Vaccine Adjuvant:

    • Approach: Use transient PRKCD inhibition during vaccination to enhance immunogenicity

    • Scientific basis: PRKCD regulates antigen presentation and T cell priming

    • Potential benefit: Enhanced and prolonged anti-tumor immune responses

    • Supporting research: PRKCD-deficient mononuclear phagocytes show enhanced antigen-presenting capacity

Biomarker Potential:

Clinical ApplicationBiomarker TypePotential Utility
Autoimmune diseasePRKCD genetic variantsDisease susceptibility prediction
Cancer immunotherapyPRKCD expression in tumor biopsiesPatient selection for PRKCD-targeted therapy
Treatment monitoringPhospho-PRKCD levels in immune cellsPharmacodynamic marker for PRKCD inhibition
Combination therapyMP infiltration in tumorsPrediction of response to PRKCD inhibition

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