PUF3 Antibody

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Description

Overview of Puf3 Protein

Puf3 is a conserved RNA-binding protein belonging to the PUF (Pumilio and FBF) family. It regulates mRNA stability, translation, and localization by binding to specific motifs in the 3′ untranslated regions (3′UTRs) of target mRNAs .

OrganismKey Functions
Saccharomyces cerevisiaeBinds mRNAs encoding mitochondrial proteins; regulates mRNA decay, translation, and mitochondrial biogenesis .
Schizosaccharomyces pombeRegulates phosphatidylinositol metabolism via PI4P5K (its3) .
Trypanosoma bruceiSuppresses expression of tethered reporter mRNAs; cytosolic mRNA-binding protein .

RNA Targets

Puf3 binds mRNAs with a consensus motif (CNUGUAHAUA) and regulates transcripts involved in:

  • Mitochondrial biogenesis: COX17, COX10, OXA1 .

  • Nuclear functions: Ribosome biogenesis, chromatin remodeling .

  • Phosphatidylinositol signaling: its3 in fission yeast .

Protein Partners

Interaction PartnerFunctional Impact
Pbp1Stabilizes Puf3-target mRNAs and enhances their translation in respiratory conditions .
Hrr25 (Casein Kinase I)Phosphorylates Puf3 to inhibit its mRNA decay activity, promoting mitochondrial biogenesis .
Closed-loop complexAssociates with translation initiation factors in an RNA-dependent manner .

Phosphorylation

  • Hrr25-mediated phosphorylation reduces Puf3’s ability to degrade target mRNAs, enhancing mitochondrial protein synthesis .

  • Metabolic state: Puf3 becomes hyperphosphorylated in respiratory conditions, stabilizing target mRNAs .

Phenotypic Effects of Puf3 Loss

OrganismPhenotype
S. cerevisiaeReduced mitochondrial mRNA translation, aberrant mitochondrial morphology .
S. pombeSuppression of its3-1 mutant defects (temperature sensitivity, low PI(4,5)P₂) .
T. bruceiFitness loss in bloodstream forms and procyclic differentiation .

Research Applications of Puf3 Antibody (Hypothetical)

While no studies in the provided sources utilized a PUF3-specific antibody, such a tool could enable:

  1. Localization studies: Tracking Puf3’s cytosolic or mitochondrial association via immunofluorescence.

  2. Co-immunoprecipitation: Validating interactions with Pbp1, Hrr25, or RNA targets.

  3. Post-translational modification analysis: Detecting phosphorylation states under varying metabolic conditions.

Key Unanswered Questions

  1. How does Puf3 coordinate nuclear and mitochondrial mRNA regulation?

  2. What structural features enable its dual roles in mRNA decay and translation?

  3. Are Puf3 homologs in pathogenic fungi (e.g., Candida) viable drug targets?

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
PUF3 antibody; YLL013C antibody; L1325 antibody; mRNA-binding protein PUF3 antibody; Pumilio homology domain family member 3 antibody
Target Names
PUF3
Uniprot No.

Target Background

Function
PUF3 is an RNA-binding protein that plays a critical role in post-transcriptional regulation. It negatively regulates the expression of COX17 by binding to the 3'-UTR of COX17 mRNA. PUF3 promotes the decay of COX17 mRNA by accelerating its deadenylation and subsequent turnover. Primarily, PUF3 binds to mRNAs encoding mitochondrial proteins, directing their localization to the vicinity of mitochondria for translation. Consequently, PUF3 regulates mitochondrial biogenesis, motility, and morphology.
Gene References Into Functions
  1. Comprehensive multi-omics data indicate that PUF3 targets multiple classes of proteins, displaying coherent post-transcriptional regulatory properties. These findings suggest that PUF3 plays a broad but nuanced role in fine-tuning gene expression. PMID: 26493364
  2. Research findings indicate a likely role of PUF3 in controlling translation under oxidative stress conditions. This links its role in repression of protein synthesis to mitochondrially active genes. PMID: 24163252
  3. Data demonstrate that PUF3 exerts a general repressive effect on mitochondrial OXPHOS abundance, translation, and respiration. This effect does not involve changes in overall mitochondrial biogenesis and is largely independent of TORC1-mitochondrial signaling. PMID: 21655263
  4. While the PUF3 regulon is conserved among all studied fungi, the dedicated regulation of mitochondrial biogenesis by PUF3 emerged only in the Saccharomycotina clade. PMID: 20661438
  5. The PAB1-mRNP structure is crucial for PUF3 function. Moreover, multiple components of the CCR4-NOT deadenylase complex, but not PAN2, interacted with PUF3. PMID: 20435044
  6. PUF3 is a mitochondrial protein that contributes to the biogenesis and motility of the organelle. PMID: 17210948
  7. The activity of mRNA-binding proteins like PUF3 may provide the necessary conditions for fine spatiotemporal control of mitochondrial protein import and mitochondrial protein complex assembly. PMID: 18523582

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Database Links

KEGG: sce:YLL013C

STRING: 4932.YLL013C

Protein Families
PUF3 family
Subcellular Location
Mitochondrion outer membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm. Note=Localizes to multiple discrete foci in the cytoplasm.

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