KEGG: dre:793293
STRING: 7955.ENSDARP00000123657
RANBP10 (RAN binding protein 10) is a ubiquitously expressed and evolutionarily conserved protein that functions primarily as a RAN-GTP exchange factor (GEF) for RAN GTPase. It is predominantly localized in the cytoplasm and cytosol, with some nuclear presence . RANBP10 serves multiple cellular functions, including:
Acting as an adapter protein to couple membrane receptors to intracellular signaling pathways
Functioning as a core component of the CTLH E3 ubiquitin-protein ligase complex that mediates ubiquitination and proteasomal degradation of transcription factor HBP1
Enhancing dihydrotestosterone-induced transactivation activity of androgen receptor (AR) and dexamethasone-induced transactivation of NR3C1
Playing essential roles in hemostasis and maintaining microtubule dynamics related to platelet shape and function
Recent studies have identified significant roles for RANBP10 in cancer progression, particularly in glioblastoma, where it promotes cell proliferation, migration, invasion, and tumor growth through regulation of the FBXW7-c-Myc axis .
RANBP10 antibodies used in research are predominantly generated through peptide immunization strategies. The process typically involves:
Selection of immunogenic epitopes: Researchers identify regions of RANBP10 that are likely to elicit strong immune responses, often targeting amino acid sequences that are surface-exposed and unique to RANBP10
Peptide synthesis: Short peptide sequences (typically 15-20 amino acids) corresponding to these regions are synthesized
Host immunization: The synthesized peptides are injected into host animals (commonly rabbits) to stimulate antibody production
Antibody purification: The resulting antisera are purified through affinity chromatography using columns prepared with the peptide immunogen
For example, commercial RANBP10 antibodies are often raised against synthetic peptides derived from specific regions of human RANBP10, such as the amino acid range 353-403 or 380-430 . These antibodies are typically produced as polyclonal IgG antibodies in rabbit hosts and purified from rabbit antiserum using epitope-specific immunogen affinity chromatography .
When using RANBP10 antibodies in Western blot applications, researchers should expect to observe a band corresponding to approximately 68 kDa . This observed molecular weight aligns with the calculated molecular weight of RANBP10, which is approximately 67.257 kDa based on its amino acid sequence .
It's important to note that the apparent molecular weight can vary slightly depending on:
Post-translational modifications
The specific cell or tissue type being analyzed
The gel percentage and running conditions used
The protein standards used for calibration
When performing Western blot analysis for RANBP10, it is recommended to include appropriate positive controls and molecular weight markers to accurately interpret results. Additionally, researchers should verify specificity through approaches such as knockdown/knockout validation or using multiple antibodies targeting different epitopes of RANBP10.
RANBP10 antibodies have been validated for multiple experimental applications, each requiring specific optimization of working dilutions:
| Application | Validated Dilution Range | Recommended Starting Dilution | Sample Preparation Notes |
|---|---|---|---|
| Western Blot (WB) | 1:500-2000 | 1:1000 | Protein extraction typically in RIPA buffer with protease inhibitors |
| ELISA | 1:5000-20000 | 1:10000 | Coating conditions: 1-10 μg/ml in carbonate buffer pH 9.6 |
| Immunohistochemistry (IHC-P) | 1:100-500 | 1:200 | Antigen retrieval required; citrate buffer pH 6.0 recommended |
| Immunofluorescence (IF) | 1:100-500 | 1:200 | 4% paraformaldehyde fixation, 0.1% Triton X-100 permeabilization |
These applications allow researchers to detect endogenous levels of RANBP10 protein across human, rat, and mouse samples . When implementing these techniques, it is advisable to perform preliminary titration experiments to determine the optimal concentration for specific experimental conditions and sample types.
For immunohistochemistry applications particularly, the protocol typically involves incubating tumor sections with primary antibodies after blocking with 3% H₂O₂ and goat serum, followed by appropriate secondary antibody incubation .
Validating antibody specificity is critical for ensuring reliable research outcomes. For RANBP10 antibodies, several complementary approaches can be implemented:
Genetic knockdown/knockout validation:
Utilize shRNA-mediated knockdown of RANBP10 (verified sequences include: CAAGTTGGTGATAGCTTATTA, AGATTGTGGACGCCAACTTTG, and CAAAGGAAGAGATGGTTACAT)
Compare antibody signal between control and RANBP10-depleted samples using Western blot or immunofluorescence
A specific antibody will show significantly reduced signal in knockdown/knockout samples
Peptide competition assay:
Pre-incubate the RANBP10 antibody with excess immunizing peptide
Apply to parallel samples alongside the non-blocked antibody
Specific binding will be abolished or significantly reduced in the peptide-blocked sample
Overexpression validation:
Molecular weight verification:
Cross-reactivity assessment:
Test the antibody against related proteins like RANBP9
Verify that the antibody specifically detects RANBP10 without cross-reacting with structurally similar proteins
Implementing multiple validation strategies provides stronger evidence for antibody specificity and increases confidence in experimental results.
For effective immunoprecipitation of RANBP10 and its protein interaction partners, the following optimized protocol is recommended:
Cell lysis and pre-clearing:
Harvest cells and wash twice with cold PBS
Lyse cells in IP buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, protease inhibitor cocktail)
Incubate on ice for 30 minutes with occasional mixing
Centrifuge at 14,000 × g for 15 minutes at 4°C
Pre-clear lysate with protein G beads for 1 hour at 4°C
Antibody binding:
Add 2-5 μg of anti-RANBP10 antibody to 500 μg-1 mg of pre-cleared lysate
Incubate with gentle rotation overnight at 4°C
Add 30-50 μl of protein G beads and incubate for 2-4 hours at 4°C
Washing and elution:
Detection of interaction partners:
Perform Western blot analysis using antibodies against suspected interacting proteins
For novel interaction discovery, samples can be analyzed by mass spectrometry
This approach has been successfully used to identify RANBP10 interactions with cellular proteins such as β-tubulin and components of the cytoskeleton . For detection of transient or weak interactions, consider using crosslinking agents like disuccinimidyl suberate (DSS) or formaldehyde before cell lysis.
RANBP10 plays a significant role in promoting glioblastoma (GBM) progression through multiple molecular mechanisms:
Regulation of the FBXW7-c-Myc axis:
Promotion of cellular proliferation:
RANBP10 knockdown significantly inhibits GBM cell proliferation as demonstrated by reduced cell viability in MTT assays
BrdU incorporation assays show decreased DNA synthesis in RANBP10-depleted cells
These effects are partially rescued by concurrent FBXW7 silencing, confirming the mechanistic link to the FBXW7-c-Myc pathway
Enhancement of migration and invasion:
RANBP10 positively regulates GBM cell migration and invasion capabilities
Downregulation of RANBP10 significantly reduces these aggressive phenotypes
The migration and invasion promoting effects likely involve cytoskeletal reorganization, potentially through RANBP10's known interactions with tubulin
Support of tumor growth in vivo:
Clinically, RANBP10 overexpression in GBM correlates with poor patient survival, highlighting its significance as both a prognostic marker and potential therapeutic target .
Researchers can employ several antibody-based methodological approaches to investigate RANBP10's role in cancer:
Tissue microarray (TMA) and immunohistochemistry analysis:
Use RANBP10 antibodies to assess expression levels across cancer patient cohorts
Correlate expression with clinical parameters (survival, tumor grade, treatment response)
Protocol: Deparaffinize tissue sections, perform antigen retrieval, block with H₂O₂ and serum, then incubate with RANBP10 primary antibody (1:200 dilution) followed by appropriate detection system
Co-immunoprecipitation for identifying cancer-relevant interaction partners:
Immunoprecipitate RANBP10 from cancer cell lysates using specific antibodies
Identify interacting proteins through mass spectrometry or Western blot
Compare interaction profiles between normal and cancer cells to identify cancer-specific interactions
This approach has revealed interactions between RANBP10 and cytoskeletal proteins that may influence cancer cell migration
Chromatin immunoprecipitation (ChIP) to study transcriptional regulation:
Use RANBP10 antibodies to investigate if RANBP10 associates with chromatin
Determine if RANBP10 directly regulates FBXW7 promoter activity
Protocol: Cross-link cells, sonicate chromatin, immunoprecipitate with RANBP10 antibody, reverse cross-links, and analyze by qPCR or sequencing
Proximity ligation assay (PLA) for in situ protein interaction detection:
Visualize and quantify RANBP10 interactions with other proteins (e.g., c-Myc) directly in cancer tissue sections
Provides spatial information about where these interactions occur within the tumor microenvironment
Particularly valuable for heterogeneous tumors like GBM
Immunofluorescence combined with functional assays:
Monitor RANBP10 subcellular localization in response to treatment with potential therapeutics
Combine with BrdU incorporation or migration assays to correlate localization changes with functional outcomes
Protocol: Fix cells with 4% PFA, permeabilize, block, and incubate with RANBP10 antibody followed by fluorescent secondary antibody
These methodologies provide complementary approaches to understand RANBP10's multifaceted roles in cancer biology, from expression patterns to protein interactions and functional consequences.
Accurate quantification and appropriate normalization of RANBP10 expression in tumor samples requires careful methodological considerations:
Western blot quantification:
Extract proteins using standardized lysis buffers containing protease inhibitors
Load equal amounts of protein (20-50 μg) per lane, confirmed by BCA/Bradford assay
Include multiple housekeeping proteins for normalization (GAPDH, β-actin, and α-tubulin)
Use at least three biological replicates for statistical validity
Quantify band intensities using software like ImageJ with background subtraction
Calculate relative RANBP10 expression as: (RANBP10 intensity / housekeeping protein intensity)
For greater accuracy, use the geometric mean of multiple housekeeping proteins for normalization
Immunohistochemistry scoring and analysis:
Use standardized scoring systems:
H-score = Σ(intensity × percentage of positive cells), range: 0-300
Allred score = proportion score (0-5) + intensity score (0-3), range: 0-8
Employ digital pathology software for objective quantification
Have multiple pathologists score samples independently to ensure reliability
Compare to both adjacent normal tissue and established control samples
RT-qPCR for mRNA quantification:
Extract RNA using commercial kits designed for tumor samples
Verify RNA integrity by spectrophotometry and gel electrophoresis
Use multiple reference genes validated for the specific tumor type
Calculate relative expression using the 2^-ΔΔCt method
Primer efficiency should be between 90-110% for accurate quantification
Controls and validation:
Include positive controls (cell lines with known RANBP10 expression levels)
For clinical samples, create a standard curve using recombinant RANBP10 protein
Validate findings using at least two independent methodologies (e.g., combine Western blot with IHC or qPCR)
Statistical considerations:
Use appropriate statistical tests based on data distribution
Perform power analysis to determine adequate sample size
Consider paired analysis for tumor vs. adjacent normal tissue
Control for confounding variables (patient age, tumor grade, treatment history)
By implementing these rigorous quantification and normalization protocols, researchers can generate reliable data on RANBP10 expression that can be meaningfully interpreted in the context of cancer biology and potential clinical applications.
Researchers working with RANBP10 antibodies may encounter several technical challenges. Here are the most common issues and their solutions:
High background in immunostaining applications:
Challenge: Non-specific binding resulting in high background signal
Solutions:
Optimize blocking conditions (use 5% BSA or 10% normal serum from secondary antibody host species)
Increase washing duration and number of washes (use 5-6 washes of 5 minutes each)
Titrate primary antibody to determine optimal concentration
Include 0.1-0.3% Triton X-100 in blocking buffer to reduce hydrophobic interactions
Pre-absorb antibody with tissue powder from the species being examined
Inconsistent or weak Western blot signals:
Challenge: Variable or faint detection of RANBP10
Solutions:
Optimize protein extraction method (use RIPA buffer with protease inhibitors)
Increase protein loading (up to 50-75 μg)
Extend primary antibody incubation (overnight at 4°C)
Use signal enhancement systems (e.g., biotin-streptavidin)
Transfer proteins to PVDF rather than nitrocellulose membranes for better protein retention
For phosphoprotein detection, include phosphatase inhibitors in lysis buffer
Poor immunoprecipitation efficiency:
Challenge: Low yield of immunoprecipitated RANBP10
Solutions:
Pre-clear lysates thoroughly with protein G beads before adding antibody
Increase antibody amount (3-5 μg per 500 μg lysate)
Extend antibody-lysate incubation time (overnight at 4°C)
Use crosslinking techniques to stabilize antibody-bead complexes
Optimize lysis buffer conditions to preserve protein interactions
Cross-reactivity with related proteins:
Challenge: Antibody detecting RANBP9 or other RAN-binding proteins
Solutions:
Epitope masking in fixed tissues:
Challenge: Formaldehyde fixation masking the RANBP10 epitope
Solutions:
Optimize antigen retrieval methods (try citrate buffer pH 6.0, EDTA buffer pH 9.0, or enzymatic retrieval)
Reduce fixation time or use alternative fixatives
Test multiple antibodies targeting different epitopes
Consider using frozen sections instead of paraffin-embedded samples
By anticipating these challenges and implementing the suggested solutions, researchers can significantly improve the quality and reliability of their RANBP10 antibody-based experiments.
Designing experiments to specifically distinguish RANBP10 from other RAN-binding proteins, particularly its close homolog RANBP9, requires careful methodological approaches:
Epitope-targeted antibody selection:
Choose antibodies raised against regions with minimal sequence homology to other RAN-binding proteins
Target the central region (amino acids 353-403) of RANBP10, which contains distinctive sequences
Validate antibody specificity using recombinant RANBP10 and RANBP9 proteins in parallel Western blots
siRNA/shRNA knockdown validation strategies:
Design specific shRNAs targeting unique regions of RANBP10 mRNA
Use verified sequences such as CAAGTTGGTGATAGCTTATTA, AGATTGTGGACGCCAACTTTG, and CAAAGGAAGAGATGGTTACAT
Perform parallel knockdown experiments for RANBP10 and RANBP9
Confirm specificity of knockdown by qRT-PCR with primers designed to unique regions
Assess antibody reactivity in control vs. knockdown samples for both proteins
Isoform-specific PCR detection:
Design PCR primers targeting unique exon junctions of RANBP10
Perform RT-PCR or qRT-PCR to distinguish RANBP10 from other RAN-binding proteins at the mRNA level
Use melting curve analysis in qPCR to confirm amplification specificity
Differential interaction analysis:
Exploit known differences in protein interaction partners
RANBP10 specifically interacts with β-tubulin and microtubules in mature megakaryocytes and platelets
Perform co-immunoprecipitation followed by Western blotting for these specific interaction partners
Compare interaction profiles between RANBP10 and other RAN-binding proteins
Subcellular localization assessment:
Functional differentiation assays:
By implementing these approaches, researchers can confidently distinguish RANBP10 from other RAN-binding proteins and ensure the specificity of their experimental findings.
Maintaining RANBP10 antibody performance requires adherence to specific storage and handling protocols:
Long-term storage recommendations:
Store antibody at -20°C in manufacturer-supplied buffer (typically PBS with 50% glycerol and 0.02% sodium azide)
Avoid repeated freeze-thaw cycles by preparing small aliquots (10-50 μL)
Label aliquots with antibody information, concentration, date, and freeze-thaw count
Shelf-life under these conditions is typically up to one year from receipt date
Short-term storage (working solutions):
Thawing and handling protocol:
Thaw frozen aliquots on ice or at 4°C, never at room temperature or above
Mix gently by finger-tapping or gentle inversion, avoid vortexing
Centrifuge briefly (5 seconds) to collect contents at the bottom of the tube
Return to storage immediately after use
Diluted antibody stability:
Prepare working dilutions fresh on the day of experiment when possible
If necessary to store diluted antibody, add carrier protein (0.5-1% BSA)
Store diluted solutions at 4°C for no more than 1 week
Monitor for signs of degradation (reduced activity, precipitation)
Transportation conditions:
Transport on dry ice for frozen antibodies
Use cold packs (4°C) for short journeys with working solutions
Avoid exposure to temperatures above 4°C during transit
Performance validation after storage:
Periodically test antibody performance using positive control samples
Compare signal intensity and background with results from fresh antibody
Include an antibody titration test if performance appears diminished
Document lot number and storage time to track potential performance changes
Antibody rejuvenation approaches:
If performance decreases, try adding additional carrier protein (0.5-1% BSA)
Filter antibody solution through a 0.22 μm filter to remove aggregates
Centrifuge at 10,000g for 5 minutes to remove precipitates before use
For severe degradation, consider purchasing a new lot rather than extensive troubleshooting
By adhering to these storage and handling recommendations, researchers can maximize the longevity and consistent performance of RANBP10 antibodies, ensuring reliable experimental results and efficient use of resources.
RANBP10 antibodies are finding increasing utility in cancer therapeutics research across several innovative applications:
Target validation for drug development:
RANBP10 antibodies are essential tools for validating this protein as a therapeutic target in GBM
Immunohistochemistry analysis reveals high RANBP10 expression correlates with poor survival in GBM patients
This validation supports developing drugs targeting RANBP10 or its downstream pathways
Antibodies enable screening for compounds that modulate RANBP10 expression or function
Companion diagnostic development:
RANBP10 antibodies can be utilized to develop immunohistochemical assays for patient stratification
Potential for identifying patients most likely to respond to therapies targeting the RANBP10-FBXW7-c-Myc axis
Standardized antibody-based assays could enable:
Tumor classification based on RANBP10 expression levels
Monitoring treatment response through sequential biopsies
Predicting potential resistance mechanisms
Antibody-drug conjugate (ADC) research:
Investigating RANBP10 antibodies as potential targeting moieties for ADCs
While primarily cytoplasmic, RANBP10's expression in cancer cells makes it a candidate for internalization-dependent ADC approaches
Research focuses on:
Identifying internalizing epitopes through antibody screening
Optimizing antibody-toxin conjugation chemistry
Testing efficacy in preclinical GBM models
Imaging and theranostic applications:
Developing radiolabeled or fluorescently tagged RANBP10 antibodies for:
Non-invasive imaging of tumors expressing high RANBP10 levels
Intraoperative visualization to guide surgical resection
Combined diagnostic and therapeutic (theranostic) approaches
Targeting functional domains:
Developing domain-specific antibodies that disrupt RANBP10's interaction with the FBXW7 promoter
Creating antibodies that specifically block RANBP10's GEF activity while preserving other functions
These domain-specific tools enable more precise inhibition strategies and help identify critical functional regions for small molecule targeting
Combination therapy optimization:
Using RANBP10 antibodies to monitor pathway modulation during combination treatments
Identifying synergistic drug combinations that enhance targeting of the RANBP10-FBXW7-c-Myc axis
Developing rational combination strategies based on mechanistic understanding of RANBP10 signaling networks
These emerging applications highlight the critical role of RANBP10 antibodies not only as research tools but also as enabling technologies for translational cancer research, potentially leading to novel therapeutic approaches for GBM and other cancers where RANBP10 plays a significant role.
RANBP10 research offers several promising avenues for understanding and potentially overcoming therapeutic resistance in glioblastoma:
c-Myc pathway modulation and resistance mechanisms:
c-Myc is a master regulator of cell growth and metabolism implicated in therapy resistance
Investigating how RANBP10 levels correlate with:
Response to standard GBM treatments (temozolomide, radiation)
Development of acquired resistance
Cancer stem cell maintenance and therapy evasion
This research could identify biomarkers of treatment resistance and potential combination therapy targets
RANBP10 as a resistance biomarker:
Serial monitoring of RANBP10 expression during treatment could reveal:
Dynamic changes in expression associated with therapy response
Threshold levels that predict treatment failure
Clonal evolution patterns during therapy resistance
Methodological approach: Develop quantitative IHC or liquid biopsy techniques to measure RANBP10 in longitudinal patient samples
Correlation with molecular resistance pathways:
Investigate associations between RANBP10 expression and established resistance mechanisms:
MGMT promoter methylation status
DNA damage repair pathway alterations
EGFR variant III expression
PD-L1 expression and immune evasion
These correlations may reveal novel resistance networks and rational targets for combination therapy
RANBP10 in tumor microenvironment interactions:
Explore how RANBP10 modulates interactions between GBM cells and the tumor microenvironment
Potential roles in:
Regulating secretion of factors that recruit supporting stromal cells
Modifying extracellular matrix to facilitate invasion away from treatment areas
Influencing immune cell infiltration and function
Methodological approach: Single-cell analysis combining RANBP10 antibody staining with spatial transcriptomics
Targeting RANBP10-dependent metabolic adaptations:
RANBP10-c-Myc axis likely influences metabolic reprogramming in GBM
c-Myc drives glycolysis and glutaminolysis that support rapid growth and therapy resistance
Research could identify:
Metabolic vulnerabilities in RANBP10-high tumors
Synergistic combinations of metabolic inhibitors with standard therapies
Biomarkers of metabolic adaptation in resistant tumors
Therapeutic targeting strategies to overcome resistance:
Develop approaches to inhibit RANBP10 in combination with standard therapies
Options include:
Direct targeting through small molecules or peptides that disrupt RANBP10 function
Indirect targeting by enhancing FBXW7 activity or directly targeting c-Myc
Using CRISPR/Cas9 or antisense oligonucleotides to reduce RANBP10 expression
By investigating these aspects of RANBP10 biology in the context of therapeutic resistance, researchers may uncover novel mechanisms driving treatment failure in GBM and develop more effective treatment strategies for this devastating disease.