Recombinant Bovine Apoptosis regulator BAX (BAX)

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Product Specs

Form
Lyophilized powder
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Notes
Avoid repeated freeze-thaw cycles. Store working aliquots at 4°C for up to one week.
Reconstitution
Centrifuge the vial briefly before opening to consolidate contents. Reconstitute the protein in sterile, deionized water to a concentration of 0.1-1.0 mg/mL. For long-term storage, we recommend adding 5-50% glycerol (final concentration) and aliquoting at -20°C/-80°C. Our standard glycerol concentration is 50%, which can serve as a guideline.
Shelf Life
Shelf life depends on several factors including storage conditions, buffer composition, temperature, and protein stability. Generally, liquid formulations have a 6-month shelf life at -20°C/-80°C, while lyophilized formulations have a 12-month shelf life at -20°C/-80°C.
Storage Condition
Upon receipt, store at -20°C/-80°C. Aliquoting is essential for multiple uses. Avoid repeated freeze-thaw cycles.
Tag Info
Tag type is determined during manufacturing.
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Synonyms
BAX; Apoptosis regulator BAX
Buffer Before Lyophilization
Tris/PBS-based buffer, 6% Trehalose.
Datasheet
Please contact us to get it.
Expression Region
1-192
Protein Length
Full length protein
Species
Bos taurus (Bovine)
Target Names
BAX
Target Protein Sequence
MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGETPELGLEQVPQDASTKKLS ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAAEMFSDGNFNWGRVVALFYFASKL VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFVAGV LTASLTIWKKMG
Uniprot No.

Target Background

Function
Recombinant Bovine BAX accelerates programmed cell death by binding to and antagonizing the apoptosis repressor BCL2 or its adenovirus homolog E1B 19k protein. Under stress, BAX undergoes a conformational change, translocating to the mitochondrial membrane. This triggers the release of cytochrome c, initiating apoptosis. BAX promotes CASP3 activation and subsequent apoptosis. BAX deficiency results in lymphoid hyperplasia and male sterility due to impaired sperm production. BAX interacts (via a C-terminal 33-residue sequence) with NOL3 (via its CARD domain), inhibiting BAX activation, translocation, and cytochrome c release from mitochondria.
Gene References Into Functions
  1. BoHV-5 replication appears to modulate BCL-2 expression and gene transcription, increasing virus production without affecting Bax expression. PMID: 24085451
  2. The Fas-FasL signaling pathway is implicated in regulating bovine oocyte apoptosis, potentially through BCL-2 associated X (BAX) upregulation. PMID: 23755802
  3. Apoptosis-inducing factor expression in luminal alveolar cells, coupled with alterations in the Bax/Bcl-2 protein ratio, may contribute to shifts in cell population dynamics during lactation. PMID: 15068062
  4. mRNA expression levels of Bax, Bcl-2, caspase-3, and -7 are unreliable indicators of apoptosis. PMID: 18272300
  5. This study examines the impact of culture conditions on heat shock protein 70 and Bax protein expression in bovine blastocysts. PMID: 18962879
Database Links
Protein Families
Bcl-2 family
Subcellular Location
[Isoform Alpha]: Mitochondrion outer membrane; Single-pass membrane protein. Cytoplasm.; [Isoform Beta]: Cytoplasm.; [Isoform Gamma]: Cytoplasm.

Q&A

What is the functional role of BAX in apoptotic pathways?

BAX is a pro-apoptotic member of the BCL-2 family that serves as a central effector of the intrinsic apoptosis pathway. Upon activation, BAX undergoes conformational changes that enable its oligomerization and insertion into the mitochondrial outer membrane, leading to membrane permeabilization and subsequent release of intermembrane space proteins into the cytoplasm . This mitochondrial outer membrane permeabilization (MOMP) is considered a "point of no return" in most forms of apoptosis, highlighting BAX's critical role in cell death regulation .

In healthy cells, BAX exists predominantly in a monomeric form in the cytosol, with a small fraction localized to mitochondria. The balance between cytosolic and mitochondrial BAX is maintained through a process called retrotranslocation, where mitochondria-localized BAX can return to the cytosol .

How does BAX differ structurally and functionally from BAK?

While both BAX and BAK function as pro-apoptotic effectors that mediate mitochondrial outer membrane permeabilization, they exhibit distinct regulatory mechanisms. Research has demonstrated that BAX and BAK can be differentially regulated through their interaction with the voltage-dependent anion channel 2 (VDAC2) . This differential regulation dictates their respective roles as executioners of apoptosis and affects their therapeutic targeting potential.

In experimental systems, researchers have used CRISPR/Cas9 gene editing to create cell lines that are dependent on either BAX (BAK-/-) or BAK (BAX-/-) to study their functions independently . These engineered cell lines remain sensitive to apoptotic cell death induced by BH3-mimetics like ABT-737, providing suitable screening platforms for identifying compounds that specifically inhibit either BAX- or BAK-mediated apoptosis .

What methodologies are recommended for recombinant BAX protein production?

For effective recombinant BAX protein production, researchers typically employ bacterial expression systems followed by rigorous purification protocols. The methodology includes:

  • Subcloning the BAX gene into an appropriate expression vector with an affinity tag (e.g., His-tag)

  • Transforming the construct into a bacterial expression strain (typically E. coli BL21)

  • Inducing protein expression under optimized conditions

  • Lysing cells and purifying BAX protein using affinity chromatography

  • Conducting size-exclusion chromatography to ensure monomeric protein status

  • Verifying protein quality through SDS-PAGE and Western blotting

For functional studies, recombinant BAX is often fluorescently labeled. For example, researchers have successfully labeled BAX with acceptor fluorophores for FRET-based interaction studies . When studying interactions with other proteins such as BimL, the donor protein can be labeled with a compatible fluorophore like Alexa568 .

What controls should be included when studying BAX activation in experimental systems?

When investigating BAX activation, the following controls are essential:

Positive controls:

  • Treatment with established BAX activators like BH3-only proteins (e.g., tBid, Bim)

  • Known small-molecule BAX activators (e.g., BTSA1)

Negative controls:

  • Inactive BAX mutants (e.g., BAX G179P that shows impaired oligomerization)

  • BAX-deficient cells (BAX-/- cell lines)

  • Inhibitors of BAX activation (e.g., prosurvival BCL-2 family proteins)

Additional experimental controls:

  • Comparison of effects in both cell-free (liposome) and cellular systems

  • Dose-response relationships to establish specificity

  • Time-course experiments to capture the dynamics of BAX activation

For liposome permeabilization assays, control reactions containing only BAX and test compounds (without active BH3-only proteins) are crucial to determine direct activation effects .

How do small-molecule BAX activators promote apoptosis in resistant cancer cells?

Small-molecule BAX activators like BTSA1 can overcome apoptosis resistance in cancer cells through direct binding to the N-terminal activation site of BAX, inducing conformational changes that promote its pro-apoptotic activity . This direct activation approach bypasses upstream resistance mechanisms that often involve anti-apoptotic BCL-2 family proteins.

The mechanism includes several key steps:

  • Direct binding to the BAX N-terminal trigger site with high affinity and specificity

  • Induction of conformational changes in BAX that promote its activation

  • Facilitation of BAX oligomerization and mitochondrial translocation

  • Promotion of mitochondrial outer membrane permeabilization

  • Induction of cytochrome c release and downstream caspase activation

In acute myeloid leukemia (AML) models, BTSA1 demonstrates potent anti-cancer activity both in vitro and in vivo, effectively suppressing human AML xenografts and increasing host survival without significant toxicity . The efficacy of BAX activators depends on several factors:

  • BAX expression levels

  • The cytosolic conformation of BAX

  • The balance between pro- and anti-apoptotic proteins

  • Cellular context and tissue type

This approach represents a promising therapeutic strategy for cancers that have developed resistance to conventional therapies, including venetoclax resistance in leukemia .

What are the methodological differences between studying BAX in liposome-based versus cellular systems?

The behavior and regulation of BAX differ significantly between liposome-based and cellular experimental systems, requiring different methodological approaches:

Liposome-based systems:

  • In liposomes, BAX interacts directly with the membrane without the influence of other regulatory proteins

  • Membrane permeabilization can be assessed using fluorescent dye release assays (e.g., ANTS/DPX liposomes)

  • These systems allow precise control of membrane composition and protein concentration

  • BAX activation can be directly measured through conformational change assays

Cellular systems:

  • In cells, BAX localization and activation are regulated by numerous factors including other BCL-2 family proteins and VDAC2

  • Mitochondrial targeting and retrotranslocation play crucial roles in BAX activity that are absent in liposome systems

  • Cellular studies require techniques like confocal microscopy, cell fractionation, and cytochrome c release assays

  • The cellular environment includes competing interactions that must be accounted for in experimental design

For example, BAX variants T182I and G179P demonstrated strikingly different behaviors in liposomes versus cells. Despite neither variant forming large oligomers in liposomes, their effects on cellular apoptosis varied significantly due to differences in mitochondrial residency . This highlights the importance of validating liposome findings in cellular contexts.

A comparative methodological approach is recommended, as shown in this experimental workflow:

Experimental SystemKey MeasurementsAdvantagesLimitations
LiposomesDye release, FRET, size-exclusion chromatographyControlled environment, direct measure of membrane permeabilizationLacks cellular regulatory mechanisms
Isolated MitochondriaCytochrome c release, membrane potentialPreserves mitochondrial proteins and structureLacks cytosolic regulators
Cell CultureApoptosis assays, BAX localization, oligomerization stateComplete physiological contextComplex interactions, indirect measurements
In vivo ModelsTumor regression, survival, toxicityTherapeutic relevanceHighest complexity, multiple variables

How can the interaction between BAX and VDAC2 be exploited for therapeutic purposes?

The interaction between BAX and voltage-dependent anion channel 2 (VDAC2) represents a promising target for therapeutic intervention in apoptosis-related diseases. Research has identified that VDAC2 differentially regulates BAX and BAK activity, suggesting that modulating this interaction could provide selective control over apoptotic processes .

Phenotypic drug screening has successfully identified compounds that target the BAX-VDAC2 interface. For example, WEHI-3773 was discovered through a high-throughput screen and found to modulate BAX-driven apoptosis by engaging VDAC2 . Interestingly, this compound exhibits context-dependent effects:

  • In some cellular contexts, WEHI-3773 inhibits BAX-mediated apoptosis

  • In other contexts, particularly where BAK is low or functionally impaired, the BAX inhibitory activity dominates

  • The compound engages a similar region of VDAC2 as previously identified BAK inhibitors, but with distinct effects on apoptotic activity

For researchers aiming to target this interaction, the following methodological approaches are recommended:

  • Protein-protein interaction assays: Techniques like FRET, proximity ligation assays, or co-immunoprecipitation can measure the BAX-VDAC2 interaction

  • Structural studies: Although the structural details of the BAX:VDAC2 interface remain to be fully defined, computational modeling and mutagenesis studies can help identify key interaction residues

  • Phenotypic screening: Cell-based assays using BAX- or BAK-dependent cell lines can identify compounds that modulate the interaction

  • Target validation: Confirmation that candidate compounds engage the intended interface using competitive binding assays or hydrogen-deuterium exchange mass spectrometry

Developing compounds that selectively influence BAX and BAK apoptotic activity through VDAC2 interaction has potential applications both as research tools and possibly therapeutics .

What role does the BAX carboxyl-terminal sequence play in its activation and membrane interactions?

The carboxyl-terminal sequence of BAX plays a critical role in its activation and membrane interactions, as evidenced by comparative studies with BIM, another BCL-2 family protein. Research has shown that the C-terminal sequence influences:

  • Membrane targeting: The C-terminal region contains hydrophobic residues that facilitate BAX insertion into the mitochondrial outer membrane

  • Protein-protein interactions: This region mediates interactions with other BCL-2 family proteins

  • Conformational changes: The C-terminus participates in the conformational rearrangements required for BAX activation

Experimental data from FRET-based interaction studies demonstrate that the C-terminal sequence affects binding affinities between BAX and activator proteins. For example, ANTS/DPX liposome permeabilization assays have been used to measure the EC50 of BAX activation by various BIM constructs, revealing the importance of specific C-terminal residues .

The following table summarizes binding affinities and activation potencies measured in membrane environments:

Protein InteractionBinding Affinity (Kd) without MembranesApparent Kd with MembranesBAX Activation EC50
BimL-BAX40-80 nM0-40 nM80-120 nM
BimL-dCTS-BAX120-500 nM40-80 nM500-1000 nM
BAX-LiposomesN/ApM rangeN/A

These measurements reveal that the presence of membranes significantly affects binding interactions, often enhancing affinity. This occurs because protein diffusion becomes restricted to two dimensions when membrane-bound, increasing the probability of productive interactions .

What are the optimal conditions for studying BAX-mediated membrane permeabilization in vitro?

For optimal study of BAX-mediated membrane permeabilization in vitro, researchers should consider the following methodological parameters:

Liposome composition:

  • A mixture of phospholipids that mimics the mitochondrial outer membrane (typically containing phosphatidylcholine, phosphatidylethanolamine, phosphatidylinositol, and cardiolipin)

  • Cardiolipin content is particularly important for BAX interaction and should be maintained at 5-20%

  • Size uniformity should be ensured through extrusion techniques (typically 100-200 nm diameter)

Assay conditions:

  • Temperature: 37°C for physiological relevance

  • Buffer composition: 20 mM HEPES, 150 mM KCl, 1 mM MgCl2, pH 7.4

  • Incubation time: 1-3 hours to allow complete membrane permeabilization

  • Protein concentrations: 100 nM recombinant BAX is typically sufficient

Detection methods:

  • ANTS/DPX liposome permeabilization assays provide quantitative measurement of membrane integrity

  • Fluorescence can be measured continuously to capture kinetics or at endpoint

  • Controls should include liposomes alone, inactive BAX mutants, and maximum permeabilization controls

For example, a standard protocol involves incubating 0.04 mg/mL ANTS/DPX liposomes with 100 nM BAX, with or without activators such as BH3-only proteins or small molecules . Membrane permeabilization is assessed after incubation by measuring the increase in fluorescence due to ANTS/DPX release .

How can BAX retrotranslocation be measured and what does it reveal about apoptosis regulation?

BAX retrotranslocation (the movement of BAX from mitochondria back to the cytosol) is a key regulatory mechanism that controls the mitochondrial residence of BAX and consequently apoptotic sensitivity. Measuring this process provides important insights into apoptosis regulation.

Methodological approaches to measure BAX retrotranslocation:

  • Fluorescence Loss In Photobleaching (FLIP):

    • Tag BAX with a fluorescent protein (e.g., GFP)

    • Repeatedly photobleach a region in the cytosol

    • Measure the decline in mitochondrial fluorescence over time

    • The rate of fluorescence loss indicates retrotranslocation rate

  • Compartmental fractionation:

    • Separate mitochondrial and cytosolic fractions biochemically

    • Measure BAX distribution between fractions by Western blotting

    • Compare distribution changes over time or after treatments

  • Microscopy-based approaches:

    • Use confocal microscopy to visualize BAX-GFP localization

    • Apply image analysis to quantify the ratio of mitochondrial to cytosolic BAX

    • Track changes in localization following stimuli

What retrotranslocation reveals about apoptosis regulation:

Studies of BAX variants with altered retrotranslocation properties (such as T182I and G179P) have demonstrated that mitochondrial residence time, rather than just oligomerization capacity, can determine cellular sensitivity to apoptosis . Cells expressing BAX variants with reduced retrotranslocation show increased sensitivity to apoptotic stimuli, even when the variants show impaired oligomerization in liposome-based assays .

This suggests a multi-step model of BAX activation where:

  • Initial mitochondrial targeting occurs

  • Retrotranslocation acts as a safeguard mechanism to prevent accumulation of BAX at mitochondria

  • Apoptotic signals inhibit retrotranslocation, allowing BAX accumulation

  • Accumulated BAX can then be activated to form pores

These findings highlight the importance of studying BAX dynamics in cellular contexts, as cell-free systems may not capture the full complexity of its regulation .

What strategies can overcome challenges in developing selective BAX modulators for therapeutic applications?

Developing selective BAX modulators presents several challenges, including protein structural complexity, redundancy with BAK, and potential toxicity. The following methodological strategies can help overcome these challenges:

1. Structure-guided drug design:

  • Target specific binding pockets like the N-terminal activation site

  • Utilize computational methods to optimize binding specificity

  • Employ fragment-based approaches to identify novel chemical scaffolds

2. Phenotypic screening with cellular selectivity:

  • Screen compounds in BAX-dependent (BAK-/-) versus BAK-dependent (BAX-/-) cell lines

  • This approach has successfully identified compounds like WEHI-3773 that show differential effects on BAX versus BAK activity

  • Incorporate healthy cell controls to identify compounds with cancer-selective effects

3. Indirect targeting through VDAC2:

  • Target the BAX-VDAC2 interaction interface rather than BAX directly

  • This approach can achieve selective modulation as demonstrated by compounds that regulate BAX through VDAC2 engagement

  • The structural details of the BAX:VDAC2 interface, while not fully defined, can inform design of selective compounds

4. Context-dependent activation strategies:

  • Develop compounds that activate BAX only in specific cellular contexts (e.g., high stress conditions or cancer-specific environments)

  • BTSA1 exhibits such selectivity, effectively promoting apoptosis in leukemia cells while sparing healthy cells

  • Sensitivity to BTSA1 is determined by BAX expression levels and cytosolic conformation

5. Combination therapeutic approaches:

  • Design BAX modulators to work synergistically with existing therapies

  • Address venetoclax resistance mechanisms through direct BAX activation

  • Target multiple levels of the apoptosis pathway simultaneously

These strategies have shown promise in developing compounds with therapeutic potential. For example, BTSA1 demonstrated potent suppression of human acute myeloid leukemia xenografts and increased host survival without toxicity . Similarly, compounds that modulate VDAC2 engagement with BAX/BAK have shown potential as both research tools and possible therapeutics .

How should researchers interpret contradictory results between cell-free and cellular BAX activation systems?

When faced with contradictory results between cell-free (e.g., liposome-based) and cellular BAX activation systems, researchers should consider several factors in their analysis:

Methodological considerations for resolving contradictions:

  • Recognize inherent system differences:

    • Cell-free systems lack regulatory proteins present in cellular environments

    • Liposomes require direct BAX-membrane interaction without the cellular machinery that controls BAX localization

    • Cellular systems contain mechanisms controlling mitochondrial localization and accumulation of BAX that are absent in liposomes

  • Examine BAX mitochondrial localization:

    • Studies with BAX variants T182I and G179P demonstrated that neither formed large oligomers in liposomes, yet they showed different apoptotic activities in cells due to differences in mitochondrial residence time

    • Reconstitute BAX/BAK DKO MEFs with WT or mutant BAX using retroviral vectors and establish cells with equivalent expression levels through FACS sorting

    • Use confocal microscopy to analyze mitochondrial localization patterns

  • Conduct comprehensive retrotranslocation assays:

    • Different BAX variants may interact with membranes differently between systems

    • Measure BAX retrotranslocation rates as they may explain discrepancies between systems

    • Consider the role of other proteins like VDAC2 in regulating BAX mitochondrial residence

  • Validate in multiple cell types:

    • Results may be cell-type specific due to different expression levels of BAX regulators

    • Test both hematopoietic and adherent cell lines to ensure robust findings

    • Consider primary cells for physiological relevance

When interpreting contradictory results, researchers should prioritize cellular systems for physiological relevance while using cell-free systems to dissect specific mechanistic aspects. The apparent discrepancies often reveal important regulatory mechanisms rather than experimental artifacts .

What quantitative approaches best determine the binding affinity and specificity of small molecules targeting BAX?

To rigorously determine binding affinity and specificity of small molecules targeting BAX, researchers should employ multiple complementary quantitative approaches:

1. Direct binding assays:

  • Isothermal Titration Calorimetry (ITC): Provides thermodynamic parameters (Kd, ΔH, ΔS) of binding without protein modification

  • Surface Plasmon Resonance (SPR): Offers real-time binding kinetics (kon, koff) and equilibrium dissociation constants (Kd)

  • Microscale Thermophoresis (MST): Requires minimal sample amounts and can detect binding in complex solutions

2. Competitive binding assays:

  • Fluorescence Polarization (FP): Using fluorescently labeled known BAX ligands to measure displacement by test compounds

  • Time-Resolved Fluorescence Resonance Energy Transfer (TR-FRET): Particularly useful for high-throughput screening of compound libraries

3. Structural confirmation:

  • Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS): Maps binding regions without requiring crystallization

  • Nuclear Magnetic Resonance (NMR): Provides detailed binding site information in solution

  • X-ray Crystallography: Offers atomic-level resolution of binding interactions when crystals can be obtained

4. Functional specificity assays:

  • Cellular assays in engineered cell lines: Compare effects in BAX−/− versus BAK−/− cells to determine specificity

  • Dose-response curves: Generate EC50 values for both target engagement and functional outcomes

  • Counter-screening: Test compounds against related BCL-2 family proteins to ensure selectivity

For example, BTSA1's specificity for BAX was demonstrated through multiple approaches, including direct binding assays showing high-affinity binding to the N-terminal activation site and cellular studies demonstrating selective induction of BAX-mediated apoptosis in leukemia cell lines .

The following table illustrates a typical data collection framework:

Assay TypeParameter MeasuredTypical Values for High-Affinity BAX BindersSpecificity Control
ITCKd<1 μMNon-BAX BCL-2 family proteins
SPRkon, koff, Kdkon >10^5 M^-1s^-1, Kd <1 μMMutant BAX binding sites
ANTS/DPXEC50 for membrane permeabilization<500 nMBAX-/- mitochondria
Cell viabilityEC50 for apoptosis induction<10 μM in BAK-/- cellsActivity in BAX-/- cells
Target engagementConformational change>2-fold signal changeInactive BAX mutants

How can researchers determine if BAX activation or inhibition is the optimal therapeutic approach for a specific disease context?

Determining whether BAX activation or inhibition is the optimal therapeutic approach requires systematic evaluation of disease context through several methodological steps:

1. Disease context characterization:

  • Apoptotic status assessment: Determine if the disease involves excessive or insufficient apoptosis

    • Excessive apoptosis: Observed in ischemic brain injury, heart failure, and certain degenerative conditions

    • Insufficient apoptosis: Characteristic of cancer and certain autoimmune disorders

  • BCL-2 family protein profiling: Quantify expression levels and activation states of BAX, BAK, and regulatory BCL-2 family proteins

  • Genetic dependency screening: Use CRISPR/Cas9 or RNAi to identify cellular dependency on BAX versus BAK

2. Therapeutic window determination:

  • Comparative toxicity analysis: Test BAX modulators in disease models versus healthy tissues

    • For example, BTSA1 demonstrates selective toxicity toward leukemia cells while sparing healthy cells

  • Dose-response studies: Determine the separation between effective and toxic doses

  • Biomarker identification: Identify markers that predict response to BAX modulation

3. Resistance mechanism evaluation:

  • Acquired resistance profiling: For cancer applications, assess if BAX modulation can overcome existing treatment resistance

    • Acquired tolerance to venetoclax is frequently associated with alterations in BCL-2 family members

    • Common resistance mechanisms include BCL-2 mutations, elevated MCL-1 or BCL-XL expression, or BAX-impairing mutations

  • Combination strategy testing: Determine if BAX modulation synergizes with existing therapies

4. Target validation in disease-relevant models:

  • Genetic validation: Use BAX knockout or overexpression models to validate the therapeutic hypothesis

  • Pharmacological proof-of-concept: Test selective BAX modulators in disease models

    • Direct BAX activation with BTSA1 has shown efficacy in AML xenografts without toxicity

    • For inhibition approaches, the lack of potent and specific small-molecule inhibitors of BAX has limited testing this hypothesis in excessive apoptosis conditions

The optimal approach varies by disease context. For cancer, direct BAX activation (as with BTSA1) represents a promising strategy to overcome treatment resistance . For conditions involving excessive apoptosis, inhibiting BAX may be beneficial, though this approach requires further development of specific inhibitors .

What emerging technologies could advance our understanding of BAX activation dynamics in living systems?

Several cutting-edge technologies show promise for revolutionizing our understanding of BAX activation dynamics in living systems:

1. Advanced imaging technologies:

  • Super-resolution microscopy (PALM, STORM, STED): Enables visualization of BAX oligomerization at the nanoscale level, below the diffraction limit

  • Lattice light-sheet microscopy: Provides rapid 3D imaging with minimal phototoxicity, allowing long-term observation of BAX dynamics in living cells

  • Fluorescence lifetime imaging microscopy (FLIM): Detects conformational changes of BAX through changes in fluorescence lifetime

  • Intravital microscopy: Enables visualization of BAX activation in tissues within living organisms

2. Optogenetic and chemogenetic tools:

  • Light-activatable BAX variants: Allow spatiotemporal control of BAX activation in specific cellular compartments

  • Chemically-induced dimerization systems: Enable precise control of BAX oligomerization

  • Optogenetic control of BAX regulators: Permits manipulation of upstream signaling pathways

3. Single-cell and single-molecule technologies:

  • Single-molecule tracking: Monitors individual BAX molecules as they transition between conformational states

  • Single-cell proteomics: Captures cell-to-cell variability in BAX activation thresholds

  • Live-cell single-molecule FRET: Detects conformational changes of individual BAX molecules in real time

4. Advanced structural biology approaches:

  • Cryo-electron microscopy: Reveals the structure of BAX oligomers in membrane environments

  • Cryo-electron tomography: Provides 3D visualization of BAX-mediated pores in near-native conditions

  • In-cell NMR: Monitors structural changes of BAX within living cells

5. Systems biology and computational approaches:

  • Mathematical modeling of BAX activation thresholds: Predicts cellular responses to apoptotic stimuli

  • Machine learning algorithms: Identify patterns in BAX activation data across different cell types and conditions

  • Integrative multi-omics analysis: Combines transcriptomics, proteomics, and metabolomics data to understand BAX regulation

These technologies will help address key questions about the kinetics of BAX activation, the structural determinants of membrane permeabilization, and the regulatory mechanisms that control the threshold for commitment to apoptosis in different cellular contexts.

How might targeting the BAX-VDAC2 interface lead to novel therapeutic approaches for apoptosis-related diseases?

Targeting the BAX-VDAC2 interface represents a promising frontier for developing novel therapeutic approaches for apoptosis-related diseases. This strategy offers several unique advantages and research directions:

1. Context-dependent regulation:

  • The BAX-VDAC2 interface provides an opportunity for nuanced regulation of apoptosis

  • VDAC2 differentially regulates BAX and BAK, suggesting that targeting this interface could allow selective modulation of specific apoptotic pathways

  • Compounds like WEHI-3773 that engage VDAC2 have demonstrated context-dependent effects on BAX activity

2. Methodological approaches for drug development:

  • Structure-based design: Although the complete structural details of the BAX:VDAC2 interface remain to be defined, computational modeling and mutagenesis studies can guide compound design

  • Phenotypic screening: Cell-based screens using BAX- or BAK-dependent cell lines have successfully identified compounds that modulate the BAX-VDAC2 interaction

  • Fragment-based drug discovery: This approach can identify novel chemical scaffolds that engage specific regions of the interface

3. Potential therapeutic applications:

Disease ContextTherapeutic ApproachMechanismPotential Advantage
CancerCompounds that disrupt BAX-VDAC2 interactionIncreased BAX activation and mitochondrial accumulationMay overcome resistance to BCL-2 inhibitors like venetoclax
Neurodegenerative diseasesCompounds that stabilize BAX-VDAC2 interactionEnhanced BAX retrotranslocation reducing mitochondrial accumulationCould reduce excessive neuronal apoptosis with fewer side effects than direct BAX inhibition
Ischemia-reperfusion injuryAcute stabilization of BAX-VDAC2 interactionTemporary reduction in BAX-mediated apoptosisTissue-protective effect during acute injury phase
Autoimmune disordersControlled modulation of BAX-VDAC2 interactionSelective induction of apoptosis in hyperactive immune cellsPotential for more selective immunomodulation

4. Future research priorities:

  • Detailed structural characterization of the BAX:VDAC2 and BAK:VDAC2 interfaces

  • Development of high-throughput screening assays specifically targeting these interfaces

  • Validation of lead compounds in disease-relevant models

  • Investigation of tissue-specific effects based on differential expression of VDAC isoforms

Research has demonstrated that subtle differences in VDAC2 engagement lead to notably different effects on BAX and BAK's ability to drive apoptosis . This suggests that with refined understanding and targeting approaches, the BAX-VDAC2 interface could yield therapeutics with improved selectivity profiles compared to direct BAX modulators.

What are the critical quality control parameters for recombinant BAX protein preparation?

Ensuring high-quality recombinant BAX protein is crucial for obtaining reliable experimental results. The following quality control parameters should be rigorously monitored:

1. Protein purity assessment:

  • SDS-PAGE analysis: Should show >95% purity with a single dominant band at the expected molecular weight (~21 kDa)

  • Mass spectrometry: Confirms protein identity and reveals any post-translational modifications or degradation

  • Size-exclusion chromatography: Ensures monomeric state and absence of aggregates

  • Endotoxin testing: Critical for in vivo applications, should be <0.1 EU/mg protein

2. Functional validation:

  • Conformational integrity: Circular dichroism spectroscopy to verify proper secondary structure

  • Membrane binding assay: Confirms the ability to interact with lipid membranes

  • Liposome permeabilization: Functional assessment of pore-forming activity using ANTS/DPX assays

  • Activation by BH3-only proteins: Demonstrates responsiveness to known activators like tBid or Bim peptides

3. Batch consistency monitoring:

  • Activity normalization: Standardize each batch against a reference preparation

  • Stability assessment: Monitor activity retention during storage

  • Freeze-thaw sensitivity: Determine functional impact of freeze-thaw cycles

4. Specific considerations for fluorescently labeled BAX:

  • Labeling efficiency: Calculate dye-to-protein ratio (optimal range typically 0.8-1.2)

  • Free dye content: Should be <5% of total fluorescence

  • Activity comparison: Labeled protein should retain >80% of unlabeled protein activity

  • Fluorescence properties: Verify excitation/emission spectra and quantum yield

For example, when preparing BAX for FRET studies with BimL, researchers have successfully labeled BAX with acceptor fluorophores while maintaining functional activity . The quality of such preparations significantly impacts the reliability of binding affinity and EC50 measurements.

A systematic approach to quality control helps identify the source of experimental variability and ensures reproducible results across different preparations and experimental conditions.

What technical challenges arise when translating BAX-targeted therapies from cellular models to in vivo applications?

Translating BAX-targeted therapies from cellular models to in vivo applications presents several technical challenges that researchers must address:

1. Pharmacokinetic and biodistribution considerations:

  • Tissue penetration: Ensuring sufficient compound concentration reaches target tissues

  • Blood-brain barrier penetration: Critical for CNS applications

  • Plasma protein binding: May reduce effective free drug concentration

  • Metabolism and excretion: Affects duration of action and dosing frequency

2. Selectivity and safety concerns:

  • Therapeutic window determination: Establishing the separation between effective and toxic doses

  • Off-target effects: Comprehensive profiling against related proteins and unrelated targets

  • Tissue-specific effects: BAX modulation may have different consequences in different tissues

  • Immune system impacts: Potential immunomodulatory effects of altering apoptotic thresholds

3. Efficacy demonstration challenges:

  • Appropriate disease models: Selection of models that accurately reflect human disease biology

  • Biomarker development: Identifying pharmacodynamic markers of BAX modulation

  • Combination strategies: Determining optimal combinations with standard-of-care treatments

  • Resistance mechanisms: Anticipating and addressing potential resistance pathways

4. Technical assessment challenges:

  • In vivo target engagement measurement: Confirming that compounds reach and engage BAX in target tissues

  • Apoptosis quantification: Developing methods to quantify changes in apoptotic rates in vivo

  • Imaging approaches: Adapting techniques like intravital microscopy to monitor therapy effects

The development of BTSA1 illustrates successful navigation of these challenges. This BAX activator demonstrated potent suppression of human AML xenografts and increased host survival without toxicity . The compound's selectivity for cancer cells while sparing healthy cells was crucial for achieving this favorable profile .

Future translation efforts should build on these successes while addressing remaining challenges, particularly for diseases requiring long-term BAX modulation where safety concerns may be more pronounced.

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