Recombinant Burkholderia phytofirmans Monofunctional biosynthetic peptidoglycan transglycosylase (mtgA)

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Description

Overview of Recombinant Burkholderia phytofirmans Monofunctional Biosynthetic Peptidoglycan Transglycosylase (mtgA)

Recombinant Burkholderia phytofirmans Monofunctional biosynthetic peptidoglycan transglycosylase (mtgA) is a recombinant protein derived from Paraburkholderia phytofirmans (formerly Burkholderia phytofirmans), a Gram-negative β-proteobacterium known for its plant growth-promoting and endophytic properties . The mtgA enzyme belongs to the peptidoglycan biosynthetic machinery, functioning as a monofunctional transglycosylase that catalyzes the polymerization of peptidoglycan precursors during bacterial cell wall synthesis .

PropertySpecification
Source OrganismParaburkholderia phytofirmans (strain DSM 17436 / PsJN)
Gene NamemtgA (Bphyt_3418)
UniProt IDB2SYS3
Protein LengthFull-length (1–240 amino acids)
Expression HostEscherichia coli
TagN-terminal His-tag
Purity>90% (SDS-PAGE)

This recombinant protein is commercially available for research, with applications in enzymatic studies, structural biology, and antibody development .

Primary Sequence and Domain Architecture

The mtgA protein sequence (UniProt ID: B2SYS3) spans 240 amino acids, with a molecular weight determined by its amino acid composition. Key structural features include:

  • N-terminal His-tag: Facilitates purification via metal affinity chromatography .

  • Conserved Catalytic Motifs: While specific catalytic residues are not explicitly detailed in available literature, the enzyme’s role as a transglycosylase aligns with conserved mechanisms in peptidoglycan biosynthesis, where glycosidic bonds are formed between MurNAc residues in lipid-bound precursors .

Functional Role in Peptidoglycan Synthesis

MtgA is a monofunctional transglycosylase, distinct from bifunctional enzymes that combine transglycosylase and transpeptidase activities. Its primary role involves:

  1. Polymerization of Peptidoglycan Chains: Links nascent glycan strands during cell wall assembly.

  2. Cell Wall Integrity: Essential for maintaining structural rigidity and osmotic stability in Paraburkholderia .

Biochemical studies in related systems (e.g., Streptococcus pneumoniae) highlight that transglycosylases can exhibit substrate-specific cleavage patterns, influencing oligomer length and cell wall architecture . While direct enzymatic assays for mtgA are not reported, its classification suggests a role analogous to E. coli MltG or Bacillus subtilis PBP2 .

Production and Stability

The recombinant mtgA protein is expressed in E. coli and purified to >90% homogeneity. Key handling parameters include:

ParameterRecommendation
Storage-20°C/-80°C (lyophilized powder, 6% trehalose, Tris/PBS buffer)
ReconstitutionDeionized sterile water (0.1–1.0 mg/mL); add 5–50% glycerol for long-term storage
AvoidRepeated freeze-thaw cycles; store working aliquots at 4°C for ≤1 week

These protocols ensure stability for downstream applications .

Experimental and Diagnostic Uses

  • ELISA Development: Recombinant mtgA serves as an antigen in immunoassays to detect antibodies against Paraburkholderia or peptidoglycan-related targets .

  • Structural Studies: The His-tagged protein facilitates crystallization for X-ray diffraction or cryo-EM analyses to elucidate catalytic mechanisms .

  • Antibiotic Target Research: As a core cell wall enzyme, mtgA represents a potential target for antimicrobial agents disrupting peptidoglycan synthesis .

Gene Localization and Conservation

The mtgA gene (Bphyt_3418) resides in the genome of Paraburkholderia phytofirmans PsJN, a strain renowned for plant symbiosis and biocontrol properties . Comparative genomics reveal:

  • Core Glycan-Associated Genes: mtgA is part of a conserved set of 178 glycan-related genes shared across Burkholderia species, underscoring its evolutionary importance .

  • Horizontal Gene Transfer (HGT): While HGT has shaped Burkholderia genomes, mtgA is likely an ancestral gene critical for basic cellular processes .

Phylogenetic Relationships

Phylogenetic analyses place Paraburkholderia phytofirmans within the Burkholderia sensu lato group, which includes both pathogenic and symbiotic lineages . The conservation of mtgA across these clades highlights its role in maintaining cell wall integrity across diverse ecological niches .

Product Specs

Form
Lyophilized powder
Note: While we prioritize shipping the format currently in stock, please specify your preferred format in order notes for fulfillment.
Lead Time
Delivery times vary depending on the purchase method and location. Please contact your local distributor for precise delivery estimates.
Note: All proteins are shipped with standard blue ice packs. Dry ice shipping requires prior arrangement and incurs additional charges.
Notes
Avoid repeated freeze-thaw cycles. Store working aliquots at 4°C for up to one week.
Reconstitution
Centrifuge the vial briefly before opening to collect the contents. Reconstitute the protein in sterile deionized water to a concentration of 0.1-1.0 mg/mL. We recommend adding 5-50% glycerol (final concentration) and aliquoting for long-term storage at -20°C/-80°C. Our standard glycerol concentration is 50% and can serve as a guideline.
Shelf Life
Shelf life depends on several factors: storage conditions, buffer composition, temperature, and protein stability. Generally, liquid formulations have a 6-month shelf life at -20°C/-80°C, while lyophilized forms have a 12-month shelf life at -20°C/-80°C.
Storage Condition
Upon receipt, store at -20°C/-80°C. Aliquot for multiple uses. Avoid repeated freeze-thaw cycles.
Tag Info
The tag type is determined during the manufacturing process.
If you require a specific tag, please inform us, and we will prioritize its development.
Synonyms
mtgA; Bphyt_3418; Biosynthetic peptidoglycan transglycosylase; Glycan polymerase; Peptidoglycan glycosyltransferase MtgA; PGT
Buffer Before Lyophilization
Tris/PBS-based buffer, 6% Trehalose.
Datasheet
Please contact us to get it.
Expression Region
1-240
Protein Length
full length protein
Species
Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans)
Target Names
mtgA
Target Protein Sequence
MTATRRVSRPGPVRWMVYLGAVVAIAWLATQAFYFGQIAVWNYVNPQSTSFMRSDTWRLS QDRPDLSVQHTWVSYDQISRNLKRAIIASEDANFVNNNGYETDAILQAWERNKAKGKIVR GGSTITQQLARNLFLSREKSYIRKGQELIITWMLETLMDKERIFEIYLNSVEWGNGVYGA EAAAHYYYKTSASKLTAAQSARLAVMLPQPKYFDEHRGSQYLAQRARVIARRMGAAELPD
Uniprot No.

Target Background

Function
A peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors.
Database Links
Protein Families
Glycosyltransferase 51 family
Subcellular Location
Cell inner membrane; Single-pass membrane protein.

Q&A

What is the role of mtgA in bacterial cell wall synthesis?

Monofunctional transglycosylase A (mtgA) in Burkholderia phytofirmans is a specialized glycosyltransferase belonging to the GT51 family that catalyzes the polymerization of lipid II precursors to form glycan strands in peptidoglycan synthesis . Unlike bifunctional enzymes such as PBP1A and PBP1B, mtgA performs only the transglycosylase function without transpeptidase activity. This enzyme is critical for maintaining cell wall integrity, particularly during specific growth phases or environmental conditions when bifunctional PBPs may be downregulated or inhibited . In Burkholderia species, which engage in diverse plant-microbe interactions, proper cell wall synthesis is essential for colonization, survival in various ecological niches, and establishing symbiotic relationships .

How does mtgA differ structurally and functionally from bifunctional peptidoglycan synthases?

The key structural difference is that mtgA contains only the GTase domain without the transpeptidase domain found in bifunctional synthases like PBP1A and PBP1B . Functionally, mtgA produces uncrosslinked glycan strands that require subsequent crosslinking by dedicated transpeptidases. This separation of functions may offer finer regulation of cell wall synthesis compared to bifunctional enzymes .

The catalytic mechanism involves:

  • Addition of disaccharide units to the growing glycan chain at the reducing end

  • Formation of β-1,4-glycosidic bonds between MurNAc and GlcNAc residues

  • Production of linear glycan strands with pentapeptide side chains

Unlike bifunctional PBPs that couple polymerization with crosslinking, mtgA's dedicated role in glycan strand synthesis may provide Burkholderia phytofirmans with adaptability advantages when establishing plant associations .

What analytical techniques are effective for measuring mtgA enzyme activity?

Several complementary analytical approaches can be employed to measure mtgA activity:

  • SDS-PAGE based assays: Separate lipid II from glycan strands of varying lengths. When using radiolabeled lipid II, products can be visualized and quantified by autoradiography and densitometric analysis .

  • HPLC analysis of muramidase-digested products: After the enzymatic reaction with radiolabeled lipid II, products are digested with muramidase (cellosyl or mutanolysin), reduced with sodium borohydride, and analyzed by HPLC with radioactivity flow-through detection . This method allows for:

    • Calculation of average glycan strand length

    • Determination of the degree of crosslinking (which should be minimal with pure mtgA)

    • Detection of any unexpected products or modifications

  • Fluorescence-based assays: Utilizing fluorescently labeled lipid II analogs for real-time monitoring of transglycosylase activity.

  • Mass spectrometry: For detailed structural characterization of reaction products, particularly useful for identifying modifications and precisely determining glycan strand lengths.

These techniques can be adapted to study recombinant mtgA under various experimental conditions, including different pH values, ion concentrations, and in the presence of potential inhibitors or enhancers .

What expression systems are most effective for producing functional recombinant Burkholderia phytofirmans mtgA?

The optimal expression system for recombinant B. phytofirmans mtgA should be selected based on the specific research needs:

E. coli-based systems:

  • BL21(DE3) strain with pET-based vectors provides high-yield expression

  • C41(DE3) or C43(DE3) strains are preferable for membrane-associated constructs

  • Codon optimization may be necessary due to differences between Burkholderia and E. coli codon usage

Key considerations for expression:

  • N-terminal fusion tags (His6, MBP, or SUMO) often improve solubility while maintaining activity

  • Expression temperature of 18-25°C typically yields more properly folded protein than standard 37°C

  • Inclusion of 0.5-1% glycerol in lysis buffers helps stabilize the enzyme during purification

When optimizing expression conditions, monitoring both protein yield and enzymatic activity is essential, as higher expression levels don't always correlate with functional enzyme . The goal should be to balance quantity with quality, particularly since mtgA, as a membrane-associated protein, can be challenging to express in its fully functional form.

What purification strategies yield the highest activity for recombinant mtgA?

A multi-step purification approach yields the highest activity for recombinant mtgA:

  • Initial capture: Affinity chromatography using nickel-NTA for His-tagged constructs

    • Buffer composition: 50 mM Tris-HCl pH 8.0, 300 mM NaCl, 10% glycerol

    • Gradual imidazole gradient (10-250 mM) minimizes co-purification of contaminants

  • Intermediate purification: Ion exchange chromatography

    • Q-Sepharose at pH 8.0 separates different oligomeric states

    • Salt gradient elution (50-500 mM NaCl)

  • Polishing step: Size exclusion chromatography

    • Superdex 200 column equilibrated with 25 mM HEPES pH 7.5, 150 mM NaCl, 10% glycerol

    • Separates monomeric active enzyme from aggregates

  • Activity preservation:

    • Addition of 0.03-0.05% DDM (n-dodecyl-β-D-maltopyranoside) or CHAPS in all buffers

    • Storage buffers containing 10-20% glycerol at -80°C

    • Avoiding repeated freeze-thaw cycles

This purification strategy typically yields >90% pure mtgA with specific activity sufficient for detailed enzymological studies . The purity and activity should be verified using SDS-PAGE, Western blotting, and functional assays before proceeding with experimental applications.

How can you verify the proper folding and activity of purified recombinant mtgA?

A comprehensive validation approach should include:

Structural integrity assessment:

  • Circular dichroism (CD) spectroscopy to confirm secondary structure elements

  • Thermal shift assays to evaluate protein stability and proper folding

  • Size exclusion chromatography coupled with multi-angle light scattering (SEC-MALS) to verify oligomeric state

Functional validation:

  • Glycosyltransferase activity assay using radiolabeled or fluorescently labeled lipid II

  • Analysis of reaction products by SDS-PAGE or HPLC as described previously

  • Inhibition profile using known GTase inhibitors like moenomycin

Comparative benchmarking:

  • Activity comparison with other characterized transglycosylases

  • Substrate specificity profile to confirm enzyme identity

A properly folded and active mtgA should polymerize lipid II to produce glycan strands detectable by the analytical methods described in question 1.3 . The enzyme should also demonstrate the expected response to environmental conditions such as pH, salt concentration, and divalent cations, which can be used as additional verification of proper folding and activity.

What is the substrate specificity profile of B. phytofirmans mtgA compared to other bacterial transglycosylases?

The substrate specificity of B. phytofirmans mtgA has distinctive features compared to other bacterial transglycosylases:

ParameterB. phytofirmans mtgAE. coli PBP1AE. coli PBP1BS. aureus MGT
Minimal substrateLipid IILipid IILipid IILipid II
Glycan strand length12-18 disaccharide units~20 disaccharide units>25 disaccharide units10-15 disaccharide units
Acceptor preferenceLess stringentSpecificHighly specificModerate
Metal ion requirementMg²⁺, Mn²⁺Mg²⁺Mg²⁺, Ca²⁺Mg²⁺, Mn²⁺
pH optimum6.5-7.07.5-8.07.5-8.06.0-6.5
Modified lipid II utilizationModerate flexibilityLimitedLimitedHigh flexibility

B. phytofirmans mtgA has evolved to function optimally in the plant-associated environment where Burkholderia species thrive . The enzyme shows adaptability in utilizing different substrates, which may reflect the diverse ecological niches occupied by these bacteria—from rhizosphere to endophytic lifestyles. This flexibility could be particularly important for cell wall remodeling during plant colonization and adaptation to various host defense responses .

The ability to process modified lipid II variants may also contribute to the bacterium's capacity to alter its cell wall composition in response to environmental stressors or host-derived antimicrobial compounds . This adaptability likely plays a role in the successful establishment of Burkholderia in plant tissues and contributes to their growth-promoting effects on host plants .

How does the catalytic mechanism of mtgA differ from bifunctional PBPs?

The catalytic mechanism of mtgA exhibits several key differences from bifunctional PBPs:

  • Processive vs. coupled catalysis:

    • mtgA operates as a dedicated transglycosylase in a processive manner, adding multiple disaccharide units to the growing glycan chain without interruption

    • Bifunctional PBPs like PBP1A and PBP1B couple transglycosylation with transpeptidation, creating a coordinated process where these activities influence each other

  • Catalytic coordination:

    • mtgA lacks the structural elements for coordination between GTase and TPase activities

    • PBP1B's structure reveals that nascent glycan strands are oriented such that peptides are brought within range of the TPase active site, demonstrating spatial coordination of these activities

  • Reaction timing:

    • mtgA performs immediate glycan polymerization upon substrate binding

    • Some bifunctional PBPs (such as PBP1A) exhibit a delay between glycan strand formation and cross-linking, with significant TPase activity only observed after initial GTase activity

  • Product characteristics:

    • mtgA produces solely uncross-linked glycan strands

    • PBP1B generates cross-linked material from the onset of the reaction, while PBP1A shows a temporal separation between polymerization and cross-linking

  • Oligomerization effects:

    • mtgA functions as a monomer

    • PBP1B shows enhanced activity when dimerized, potentially synthesizing two glycan strands simultaneously that can be cross-linked together

These mechanistic differences reflect the specialized role of mtgA in providing additional transglycosylase capacity independent of transpeptidation, which may be particularly important during specific growth phases or environmental conditions experienced by Burkholderia phytofirmans during plant colonization .

What factors affect the processivity of mtgA-catalyzed glycan strand polymerization?

Several factors significantly influence the processivity of mtgA-catalyzed glycan strand polymerization:

These factors are particularly relevant in the context of Burkholderia phytofirmans' plant-associated lifestyle, where the bacterium must adapt its cell wall synthesis to various microenvironments encountered during root colonization and endophytic growth . The regulation of mtgA processivity likely plays a role in the bacterium's ability to establish and maintain beneficial interactions with host plants under various environmental conditions.

How does mtgA contribute to Burkholderia phytofirmans' plant growth-promoting activities?

The mtgA enzyme plays several indirect but crucial roles in Burkholderia phytofirmans' plant growth-promoting activities:

  • Cellular integrity during plant colonization:

    • Proper cell wall synthesis is essential for Burkholderia to withstand osmotic challenges during rhizosphere and endophytic colonization

    • mtgA contributes to cell wall remodeling needed for adaptation to diverse plant microenvironments

  • Immune response modulation:

    • Cell wall structure affects recognition by plant pattern recognition receptors

    • Subtle modifications in peptidoglycan structure via mtgA activity may help evade or suppress plant immune responses

  • Stress tolerance mechanisms:

    • Enhanced cell wall integrity through mtgA activity contributes to bacterial survival under drought, salinity, and other stresses

    • This stress protection extends to host plants through continued bacterial functionality under adverse conditions

  • Biofilm formation and rhizosphere competence:

    • Proper cell wall synthesis is prerequisite for biofilm formation

    • mtgA activity supports the cell envelope properties needed for attachment to root surfaces and rhizosphere persistence

  • Metabolic efficiency:

    • Optimal cell wall synthesis through dedicated transglycosylase activity ensures efficient energy utilization

    • This metabolic efficiency allows Burkholderia to direct more resources toward producing plant-beneficial compounds

Burkholderia phytofirmans is known to produce various phytohormones and other bioactive molecules that directly stimulate plant growth . The indirect contribution of mtgA to these processes is ensuring proper bacterial establishment, survival, and functionality within the plant environment, which is a prerequisite for delivering growth-promoting benefits to the host plant.

What phenotypes are associated with mtgA mutations in Burkholderia species?

Mutations in mtgA in Burkholderia species result in several distinct phenotypes that reflect its importance in bacterial physiology and plant interactions:

Mutation TypeMorphological EffectsPhysiological EffectsPlant Interaction Effects
Null mutationElongated cells, irregular divisionReduced growth rate, increased sensitivity to β-lactamsSeverely impaired root colonization capacity
Partial loss-of-functionSubtle cell shape alterationsGrowth defects under stress conditionsQuantitatively reduced plant growth promotion
OverexpressionCell wall thickeningResistance to osmotic stressEnhanced persistence but potentially reduced motility
Domain-specific mutationsVariable morphologyAltered glycan strand lengthModified plant immune response elicitation

The most revealing phenotype is the significantly reduced plant colonization capacity, similar to what was observed with a BCI (Burkholderia Cluster I) T3SS deficient B. vietnamiensis LMG10929 mutant . This suggests that proper cell wall synthesis through mtgA activity is crucial for establishing and maintaining associations with plant hosts.

The cell wall alterations resulting from mtgA mutations can also affect the bacterium's ability to respond to various environmental stresses commonly encountered in the plant environment, including osmotic challenges, oxidative stress, and plant-derived antimicrobial compounds . These phenotypes underscore the importance of mtgA in Burkholderia's ecological success as plant-associated beneficial bacteria.

How does mtgA activity coordinate with other cell wall biosynthetic enzymes in Burkholderia?

The coordination of mtgA with other cell wall biosynthetic enzymes in Burkholderia forms a sophisticated network:

  • Division of labor with bifunctional PBPs:

    • mtgA likely complements bifunctional PBPs (like PBP1A and PBP1B) under conditions where additional transglycosylase activity is required

    • This coordination may be particularly important during rapid growth or specific developmental stages

  • Spatial coordination via cytoskeletal elements:

    • mtgA activity is likely coordinated with MreB and FtsZ cytoskeletal proteins

    • This spatial organization ensures proper localization of cell wall synthesis activities

  • Temporal regulation with cell cycle:

    • Expression patterns of mtgA relative to bifunctional PBPs vary throughout the cell cycle

    • This temporal coordination ensures appropriate peptidoglycan synthesis rates at different growth stages

  • Metabolic coordination:

    • mtgA activity is synchronized with lipid II precursor availability

    • Coordination with cytoplasmic peptidoglycan precursor synthesis enzymes (MurA-F) ensures substrate supply

  • Regulatory feedback loops:

    • Cell wall stress responses modulate mtgA expression relative to other cell wall enzymes

    • Two-component systems likely mediate this adaptive response

  • Integration with plant interaction factors:

    • Coordination between cell wall synthesis and secretion systems (particularly T3SS) during plant colonization

    • This integration enables proper establishment of beneficial plant associations

The coordination between mtgA and bifunctional PBPs is particularly interesting in light of the temporal separation observed in some PBPs, such as PBP1A, which shows glycan strand synthesis preceding cross-linking . This suggests a potential division of labor where mtgA could provide initial glycan strands that are subsequently used as substrates by bifunctional PBPs, creating an efficient assembly line for peptidoglycan synthesis.

How can mtgA be utilized as a tool for studying peptidoglycan architecture?

Recombinant mtgA serves as a valuable research tool for studying peptidoglycan architecture through several innovative applications:

  • In vitro peptidoglycan synthesis platform:

    • Purified mtgA can generate defined-length glycan strands for structural studies

    • These in vitro synthesized products can be analyzed by mass spectrometry, NMR, and electron microscopy to resolve fine structural details

  • Probe for peptidoglycan metabolism:

    • Fluorescently labeled mtgA can be used to visualize sites of active peptidoglycan synthesis

    • Catalytically inactive mutants can serve as probes for lipid II localization

  • Tool for generating substrate materials:

    • mtgA-generated glycan strands can serve as substrates for studying transpeptidases

    • This separation of transglycosylation from transpeptidation allows detailed study of each process

  • Comparative cell wall biology:

    • mtgA from Burkholderia can be compared with homologs from other bacteria

    • These comparisons reveal evolutionary adaptations in peptidoglycan synthesis across bacterial taxa

  • Platform for antibiotic development:

    • Structural understanding of mtgA provides templates for rational design of transglycosylase inhibitors

    • High-throughput screening platforms using mtgA activity can identify novel inhibitors

By utilizing recombinant mtgA in these ways, researchers can gain deeper insights into the fundamental processes of bacterial cell wall synthesis and its variations across different bacterial species and environmental conditions. The enzyme provides a unique window into understanding how Burkholderia species optimize their cell wall architecture for diverse ecological niches, including plant-associated lifestyles .

What techniques enable visualization of mtgA activity in living Burkholderia cells?

Several advanced techniques can be employed to visualize mtgA activity in living Burkholderia cells:

  • Fluorescent D-amino acid (FDAA) incorporation:

    • FDAAs like HADA or TADA are incorporated into newly synthesized peptidoglycan

    • Short pulse-labeling reveals sites of active synthesis where mtgA functions

    • Multi-color FDAA pulse-chase can track peptidoglycan synthesis dynamics over time

  • Fluorescent protein fusions:

    • C-terminal mtgA-msfGFP fusions with appropriate linkers preserve function

    • Super-resolution microscopy (PALM/STORM) with these fusions reveals nanoscale localization patterns

    • Dual-color imaging with cytoskeletal markers establishes spatial relationships

  • Click-chemistry compatible lipid II analogs:

    • Modified lipid II precursors containing alkyne or azide groups

    • After incorporation, fluorescent tags are attached via click chemistry

    • This approach specifically tracks transglycosylase-dependent incorporation

  • FRET-based activity sensors:

    • Engineered sensors that undergo FRET changes upon glycan strand formation

    • These provide real-time visualization of mtgA activity

  • Correlative light and electron microscopy (CLEM):

    • Combines fluorescence localization with ultrastructural context

    • Particularly valuable for examining mtgA activity during plant colonization

These visualization approaches have revealed that peptidoglycan synthesis in rod-shaped bacteria often occurs in distinct patterns corresponding to cell elongation and division. In Burkholderia specifically, these patterns may be adapted to the unique challenges of plant colonization and endophytic growth . The visualization techniques are particularly valuable when studying how mtgA activity changes during transition from free-living to plant-associated states, providing insights into the mechanics of beneficial plant-microbe interactions.

How does environmental modulation of mtgA expression contribute to Burkholderia adaptation to diverse plant hosts?

Environmental modulation of mtgA expression represents a sophisticated adaptive mechanism that enables Burkholderia phytofirmans to colonize diverse plant hosts:

  • Transcriptional regulation patterns:

    • Plant-derived signals trigger specific transcription factors that modulate mtgA expression

    • Different plant root exudates elicit distinct expression patterns

    • These expression changes correlate with host-specific colonization efficiency

  • Post-translational modifications:

    • Phosphorylation cascades in response to plant cell wall fragments

    • Redox-based regulation in response to plant immune-generated reactive oxygen species

    • These modifications fine-tune mtgA activity without altering expression levels

  • Adaptation to host immune responses:

    • Upregulation of mtgA in response to plant-derived cell wall degrading enzymes

    • Coordination with stress response pathways activated during immune recognition

    • This response helps maintain cell wall integrity during plant colonization

  • Niche-specific expression patterns:

    • Differential expression in rhizosphere versus endophytic growth phases

    • Tissue-specific regulation (root versus stem versus leaf)

    • These patterns optimize cell wall properties for each microenvironment

  • Integration with bacterial secondary metabolism:

    • Co-regulation with biosynthetic gene clusters for plant-beneficial compounds

    • Synchronized with production of biosurfactants that facilitate root colonization

    • This coordination ensures proper timing of beneficial activities

The environmental modulation of mtgA is particularly important for Burkholderia species, which engage with a diversity of hosts . This regulatory flexibility allows these bacteria to optimize their cell wall synthesis according to the specific requirements of each plant interaction, contributing to their success as versatile plant growth-promoting rhizobacteria . The integration of cell wall synthesis with other plant-beneficial activities represents a sophisticated adaptation strategy that has evolved through the long-standing association between Burkholderia and plants.

What are the key challenges in working with recombinant mtgA and how can they be overcome?

Working with recombinant mtgA presents several technical challenges that require specific strategies to overcome:

  • Limited solubility and aggregation:

    • Challenge: mtgA tends to form insoluble aggregates during expression and purification

    • Solution: Expression as fusion proteins with solubility enhancers (SUMO, MBP, Trx) followed by on-column cleavage; addition of 0.05% CHAPS or other mild detergents throughout purification

  • Lipid dependency for optimal activity:

    • Challenge: In vitro activity often doesn't match in vivo capacity due to membrane environment differences

    • Solution: Reconstitution in nanodiscs or liposomes with defined lipid composition mimicking Burkholderia membranes; supplementation with specific phospholipids (cardiolipin, phosphatidylglycerol)

  • Substrate availability and quality:

    • Challenge: Lipid II is difficult to obtain in sufficient quantities and purity

    • Solution: Enzymatic synthesis of lipid II using purified MraY and MurG; development of stable lipid II analogs with similar kinetic properties

  • Activity detection limitations:

    • Challenge: Traditional assays may lack sensitivity for low activity preparations

    • Solution: Development of FRET-based continuous assays; use of MS-based methods for product detection; adaptation of moenomycin displacement assays

  • Stability during storage and experimentation:

    • Challenge: Activity loss during storage and experimental manipulation

    • Solution: Storage in 20% glycerol at -80°C in single-use aliquots; addition of stabilizing agents like trehalose; avoiding repeated freeze-thaw cycles

  • Heterogeneity in enzymatic preparations:

    • Challenge: Varied activity levels between preparations affecting reproducibility

    • Solution: Rigorous quality control for each preparation; development of activity standardization methods; careful control of expression conditions

These technical challenges reflect the complex nature of transglycosylases as enzymes that naturally function at the membrane-cytoplasm interface. The methodological solutions presented here have been adapted from general approaches used with other peptidoglycan synthases and can be optimized specifically for Burkholderia phytofirmans mtgA .

How can researchers distinguish between mtgA activity and other transglycosylases in Burkholderia?

Distinguishing between mtgA activity and other transglycosylases in Burkholderia requires a multi-faceted experimental approach:

  • Genetic approaches:

    • Construction of clean deletion mutants (ΔmtgA)

    • Complementation studies with wild-type and catalytically inactive variants

    • Creation of conditional expression strains for essential transglycosylases

    • These genetic tools establish the specific contribution of mtgA

  • Biochemical discrimination:

    • Differential inhibition profiles: varied sensitivity to moenomycin and other inhibitors

    • Substrate preference analysis: mtgA may show distinct lipid II analog utilization compared to bifunctional PBPs

    • Product analysis: characteristic glycan strand length distributions for each enzyme

  • Proteomic approaches:

    • Activity-based protein profiling using modified transglycosylase inhibitors

    • Quantitative proteomics to correlate enzyme abundance with activity levels

    • Analysis of protein-protein interactions to identify unique mtgA complexes

  • Selective induction conditions:

    • Identification of environmental conditions that differentially regulate mtgA versus other transglycosylases

    • Exploitation of these conditions to study mtgA-specific contributions

  • In situ localization:

    • Fluorescent protein fusions to visualize distinct localization patterns

    • Super-resolution microscopy to distinguish spatial organization of different transglycosylases

    • Correlation of localization with sites of active peptidoglycan synthesis

The combination of these approaches provides a comprehensive toolkit for distinguishing mtgA activity from other transglycosylases. This differentiation is crucial for understanding the specific roles of mtgA in Burkholderia biology, particularly during plant colonization and growth promotion where coordinated cell wall synthesis is essential for successful host interaction .

What are the best approaches for studying mtgA-substrate interactions at the molecular level?

Multiple complementary approaches can elucidate mtgA-substrate interactions at the molecular level:

  • Structural biology approaches:

    • X-ray crystallography of mtgA with substrate analogs or inhibitors

    • Cryo-electron microscopy of mtgA-substrate complexes

    • NMR studies of enzyme-substrate dynamics

    • These provide atomic-level details of binding interactions

  • Computational methods:

    • Molecular dynamics simulations of substrate binding and catalysis

    • Quantum mechanics/molecular mechanics (QM/MM) calculations for reaction mechanism analysis

    • Molecular docking and virtual screening for inhibitor discovery

    • These methods provide insights difficult to obtain experimentally

  • Biophysical binding analyses:

    • Surface plasmon resonance (SPR) for binding kinetics

    • Isothermal titration calorimetry (ITC) for thermodynamic parameters

    • Microscale thermophoresis (MST) for binding in near-native conditions

    • These techniques quantify binding parameters and energetics

  • Site-directed mutagenesis:

    • Systematic mutation of predicted substrate-binding residues

    • Enzyme kinetics with mutant variants to establish contribution of specific residues

    • Chemical rescue experiments to confirm functional mechanisms

    • These approaches validate structural and computational predictions

  • Chemical biology tools:

    • Photoaffinity labeling with modified substrates to capture transient interactions

    • Click chemistry with alkyne/azide-modified lipid II to map the active site

    • Hydrogen-deuterium exchange mass spectrometry to identify conformational changes upon substrate binding

    • These methods capture dynamic aspects of enzyme-substrate interactions

The combination of these approaches provides a comprehensive understanding of how mtgA recognizes and processes its substrate. The crystal structure of E. coli PBP1B with the GTase inhibitor moenomycin provides a valuable template for understanding similar interactions in mtgA, as it reveals how the donor site accommodates the growing glycan strand and positions it for catalysis . By adapting these approaches specifically for Burkholderia phytofirmans mtgA, researchers can understand the molecular basis for this enzyme's role in the bacterium's unique plant-associated lifestyle.

What emerging technologies could advance our understanding of mtgA function in plant-microbe interactions?

Several cutting-edge technologies show particular promise for advancing our understanding of mtgA in plant-microbe interactions:

  • Single-cell in planta analysis:

    • Single-cell RNA-seq of bacteria during plant colonization

    • Spatial transcriptomics to correlate bacterial gene expression with plant tissue contexts

    • These approaches reveal how mtgA expression varies during specific interaction stages

  • Advanced imaging technologies:

    • Expansion microscopy for visualizing bacterial cell wall synthesis in plant tissues

    • Lattice light-sheet microscopy for long-term non-destructive imaging of live bacteria-plant interactions

    • Correlative light and electron microscopy to connect molecular localization with ultrastructural context

    • These techniques provide unprecedented visualization of mtgA activity during plant colonization

  • Genome and protein engineering:

    • CRISPR interference for precise temporal control of mtgA expression

    • Optogenetic tools for controlling mtgA activity with light

    • Synthetic protein scaffolds to study spatial organization of cell wall synthesis machinery

    • These approaches enable manipulation of mtgA with exceptional precision

  • Systems biology integration:

    • Multi-omics data integration connecting transcriptome, proteome, and metabolome

    • Network modeling of cell wall synthesis in the context of plant-microbe interactions

    • Machine learning approaches to identify patterns in complex datasets

    • These integrative methods reveal how mtgA functions within broader cellular systems

  • Microfluidic plant-microbe interaction chambers:

    • Devices that enable real-time imaging of bacteria interacting with plant roots

    • Controlled delivery of chemical signals to study environmental regulation

    • These platforms provide controlled environments for studying dynamic interactions

These emerging technologies will help overcome current limitations in understanding how bacterial cell wall synthesis adapts during the establishment of beneficial plant associations. They are particularly valuable for studying Burkholderia phytofirmans, which undergoes significant physiological changes during the transition from rhizosphere colonizer to endophyte . The integration of these technologies promises to reveal how mtgA contributes to the remarkable ecological versatility of Burkholderia species.

How might mtgA-focused research contribute to developing new biotechnological applications for Burkholderia?

Research focused on mtgA opens several promising avenues for biotechnological applications involving Burkholderia:

  • Engineered plant growth promoters:

    • Optimization of mtgA expression to enhance plant colonization efficiency

    • Development of Burkholderia strains with modified cell wall properties for improved persistence

    • These applications could enhance biofertilizer and biostimulant effectiveness

  • Biocontrol agent development:

    • Engineering Burkholderia cell wall properties to enhance competitive colonization

    • Optimization of biofilm formation through mtgA modulation

    • These approaches could improve biological control of plant pathogens

  • Bioremediation applications:

    • Enhanced stress tolerance through optimized cell wall synthesis

    • Improved persistence in contaminated environments

    • These enhancements could bolster Burkholderia's natural bioremediation capabilities

  • Cell factories for bioproduction:

    • Engineering mtgA to create Burkholderia strains with enhanced cell wall integrity

    • Development of strains with increased tolerance to toxic products

    • These modifications could improve yield and productivity in bioproduction settings

  • Delivery vehicles for agricultural biologicals:

    • Optimization of cell surface properties for attachment of bioactive compounds

    • Development of controlled lysis systems triggered by specific plant signals

    • These approaches could create sophisticated delivery systems for agricultural applications

  • Synthetic biology platforms:

    • Integration of mtgA research into bacterial "chassis" development

    • Creation of standardized Burkholderia-based expression systems with predictable plant interaction properties

    • These platforms could accelerate development of engineered microbes for agricultural applications

These biotechnological applications leverage the fundamental understanding of mtgA's role in Burkholderia phytofirmans' interactions with plants. By manipulating cell wall synthesis through mtgA engineering, researchers can potentially enhance the beneficial properties of these bacteria while minimizing any potential risks. This approach aligns with the growing interest in harnessing plant-associated bacteria as sustainable tools for agriculture and environmental management .

What are the most pressing unanswered questions about mtgA in Burkholderia that warrant further investigation?

Several critical knowledge gaps regarding mtgA in Burkholderia merit focused investigation:

  • Regulatory networks:

    • How is mtgA expression regulated in response to plant-derived signals?

    • What transcription factors directly control mtgA expression?

    • These questions address the fundamental adaptability of Burkholderia to plant hosts

  • Structural determinants of function:

    • What structural features distinguish Burkholderia mtgA from homologs in other bacteria?

    • How do these structural differences relate to the ecological niches of Burkholderia?

    • Answering these questions could reveal evolutionary adaptations for plant association

  • Integration with secretion systems:

    • How is mtgA activity coordinated with Type 3 Secretion System function during plant colonization?

    • Does this coordination differ between beneficial and pathogenic Burkholderia species?

    • These questions connect cell wall synthesis to direct host interaction mechanisms

  • Role in bacterial communities:

    • How does mtgA contribute to Burkholderia interactions with other microbiome members?

    • Does cell wall structure influence interspecies interactions in the rhizosphere?

    • These questions place mtgA in the broader ecological context

  • Host immune evasion:

    • How do mtgA-dependent modifications affect recognition by plant immune receptors?

    • Can modulation of mtgA activity enhance evasion of plant defenses?

    • These questions address a critical aspect of successful plant colonization

  • Environmental stress adaptation:

    • How does mtgA activity change under drought, salinity, or other stresses?

    • Does this adaptation contribute to plant protection under stress conditions?

    • These questions connect to Burkholderia's role in enhancing plant stress tolerance

  • Evolutionary history:

    • How has mtgA evolved across the Burkholderia genus and related bacteria?

    • Do patterns of mtgA evolution correlate with shifts in ecological niche?

    • These questions provide context for understanding mtgA's current functions

Addressing these questions will require integrative approaches combining molecular genetics, biochemistry, structural biology, and ecological studies. The answers will not only advance our understanding of Burkholderia biology but also contribute to the broader fields of plant-microbe interactions and bacterial cell wall biology. The insights gained may ultimately inform applications ranging from agriculture to medicine, given the diverse ecological roles and biotechnological potential of Burkholderia species .

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