Recombinant Escherichia coli GTPase Era (era)

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Description

Functional Roles in Ribosome Biogenesis

Era orchestrates critical steps in 30S ribosomal subunit maturation:

  1. 16S rRNA Processing: Binds precursor 16S rRNA near its 3′ end, facilitating endonucleolytic cleavage by YbeY and exonucleolytic trimming by RNase II, R, PH, and PNPase .

  2. Quality Control: Ensures proper folding of the 30S platform region, preventing misfolded intermediates .

  3. GTPase Activity: Hydrolyzes GTP to GDP, with activity stimulated by RNA binding .

Table 2: Functional Characteristics

PropertyDescription
GTPase activityIntrinsic activity: ~0.2 min⁻¹; RNA-bound Era shows 5–10× higher activity .
RNA interactionBinds 16S rRNA at GAUCACCUCC sequence (nucleotides 1506–1542) .
Temperature sensitivityEra mutants (e.g., T99I) partially suppress cold sensitivity in ΔybeY strains .

3.1. Mechanism of GTPase Activation

  • RNA binding (e.g., 16S rRNA) enhances GTP hydrolysis by stabilizing Era’s active conformation .

  • Critical residues:

    • T99 (GTPase domain): Mutation to isoleucine (T99I) alters Era’s interaction with GDP/GTP, prolonging RNA binding and enabling partial suppression of ΔybeY phenotypes .

    • E97/R100 (GTPase domain): Form a conserved network influencing nucleotide cycling .

3.2. Suppression of Ribosome Defects

  • Overexpression of Era rescues growth defects in ΔybeY strains by improving 16S rRNA processing and 70S assembly .

  • GroEL interaction: Era(T99I) increases GroEL association with 30S subunits, suggesting chaperone-mediated stabilization .

3.3. Evolutionary Conservation

  • Era homologs exist in mitochondria (ERAL1) and chloroplasts, where they maintain roles in ribosome assembly .

  • Human disease link: ERAL1 mutations cause Perrault syndrome, highlighting Era’s conserved importance .

Recombinant Era in Experimental Systems

  • Expression systems: E. coli BL21(DE3) commonly used for His-tagged or GST-fusion Era .

  • Purification: Affinity chromatography (Ni-NTA or glutathione resins) followed by RNA removal via ion exchange .

Table 3: Mutational Analysis of Era

MutationPhenotypeMechanism
T99ISuppresses ΔybeY growth defectsAlters GTP/GDP cycling; enhances RNA binding .
K21R (G1 motif)LethalDisrupts GTP binding .
E200K (KH domain)Cold sensitivityImpairs rRNA binding .

Regulatory and Interaction Networks

  • (p)ppGpp binding: Era in Staphylococcus aureus interacts with the stringent response mediator RelA, linking ribosome biogenesis to nutrient stress .

  • Protein partners: YbeY, S11, and CshA helicase form complexes with Era to coordinate rRNA processing .

Product Specs

Form
Lyophilized powder. We will ship the available format, but if you have specific format requirements, please note them when ordering.
Lead Time
Delivery times vary by purchase method and location. Consult local distributors for specific delivery times. All proteins are shipped with blue ice packs by default. Request dry ice in advance for an extra fee.
Notes
Avoid repeated freezing and thawing. Store working aliquots at 4°C for up to one week.
Reconstitution
Briefly centrifuge the vial before opening. Reconstitute protein in sterile deionized water to 0.1-1.0 mg/mL. Add 5-50% glycerol (final concentration) and aliquot for long-term storage at -20°C/-80°C. Our default final glycerol concentration is 50%.
Shelf Life
Shelf life depends on storage conditions, buffer, temperature, and protein stability. Liquid form: 6 months at -20°C/-80°C. Lyophilized form: 12 months at -20°C/-80°C.
Storage Condition
Store at -20°C/-80°C upon receipt. Aliquot for multiple uses. Avoid repeated freeze-thaw cycles.
Tag Info
Tag type is determined during manufacturing. If you require a specific tag, please inform us and we will prioritize its development.
Synonyms
era; EcSMS35_2719GTPase Era
Buffer Before Lyophilization
Tris/PBS-based buffer, 6% Trehalose.
Datasheet
Please contact us to get it.
Expression Region
1-301
Protein Length
full length protein
Purity
>85% (SDS-PAGE)
Species
Escherichia coli (strain SMS-3-5 / SECEC)
Target Names
era
Target Protein Sequence
MSIDKSYCGF IAIVGRPNVG KSTLLNKLLG QKISITSRKA QTTRHRIVGI HTEGAYQAIY VDTPGLHMEE KRAINRLMNK AASSSIGDVE LVIFVVEGTR WTPDDEMVLN KLRDGKAPVI LAVNKVDNVQ EKADLLPHLQ FLASQMNFLD IVPISAETGL NVDTIAAIVR KHLPEATHHF PEDYITDRSQ RFMASEIIRE KLMRFLGAEL PYSVTVEIER FVSNERGGYD INGLILVERE GQKKMVIGNK GAKIKTIGIE ARKDMQEMFE APVHLELWVK VKSGWADDER ALRSLGYVDD L
Uniprot No.

Target Background

Function
GTPase Era is an essential GTPase that binds GDP and GTP, with rapid nucleotide exchange. It is involved in 16S rRNA processing, 30S ribosomal subunit biogenesis, and possibly cell cycle regulation and energy metabolism.
Database Links
Protein Families
TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily, Era GTPase family
Subcellular Location
Cytoplasm. Cell inner membrane; Peripheral membrane protein.

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