Recombinant Human Cadherin-6 (CDH6)

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Description

Molecular Structure and Characteristics

Cadherin-6 belongs to the class II cadherin family of calcium-dependent cell adhesion molecules. Its distinctive molecular structure includes five extracellular domains and a large cytoplasmic domain that facilitates interaction with catenin molecules . What distinguishes CDH6 from other cadherin family members such as CDH1, CDH2, or CDH3 is the presence of RGD motifs and the His-Ala-Val (HAV) motif in its extracellular domains, which are essential for the stabilization and clustering of adjacent monomers .

The complete human CDH6 gene encodes a typical cadherin molecule consisting of 790 amino acids . Sequence analysis has revealed that human CDH6 shows extremely high homology (97% for the putative mature protein) with rat K-cadherin, suggesting that CDH6 is the human counterpart of rat K-cadherin . This high degree of conservation across species underscores the fundamental importance of this protein in biological systems.

The recombinant form of human CDH6 typically includes specific regions of the native protein. Commercial preparations often feature the extracellular domain (Thr22-Ala615 & Ser54-Ala615) fused to a human IgG1 Fc region (Pro100-Lys330) and a 6-His tag for purification purposes .

Expression Pattern in Normal Tissues

CDH6 exhibits a tissue-specific expression pattern in normal human tissues. Northern blot analysis using specific probes corresponding to the signal and precursor sequence has revealed that brain, cerebellum, and kidney show strong expression of CDH6 . This expression pattern aligns with CDH6's known involvement in the morphogenesis of the central nervous system and kidney .

In contrast, tissues such as lung, pancreas, and gastric mucosa demonstrate only weak expression of CDH6 . Interestingly, normal liver tissue does not express detectable levels of CDH6, which becomes significant when considering the protein's abnormal expression in liver cancer .

In the reproductive system, CDH6 localizes to the endometrial luminal epithelial cell surface specifically during the mid-secretory/receptive phase of the menstrual cycle . This temporal regulation suggests a specialized function in reproductive processes, particularly in preparing the endometrium for embryo implantation.

Table 2: Expression Pattern of Cadherin-6 in Normal Human Tissues

TissueExpression Level
BrainStrong
CerebellumStrong
KidneyStrong
LungWeak
PancreasWeak
Gastric MucosaWeak
LiverNot detected
EndometriumStrong (during mid-secretory phase)

Role in Cell Adhesion

As a member of the cadherin family, CDH6 primarily functions as a cell adhesion molecule. In vitro studies have demonstrated that recombinant human CDH6 can support cell adhesion, with more than 30% of cells adhering to CDH6-coated plates after 30 minutes at 37°C . This adhesive capacity is critical for maintaining tissue architecture and cellular organization.

On a molecular level, CDH6 mediates homophilic cell-cell adhesion through its extracellular domains while its cytoplasmic domain interacts with catenin molecules to establish connections with the cytoskeleton . This interaction forms part of the adhesion junction complex that provides mechanical strength to cellular attachments.

Gene Ontology (GO) analysis has confirmed that CDH6 is associated with multiple terms including "cell-cell adhesion via plasma membrane adhesion," "plasma membrane adhesion molecules," and "collagen-containing extracellular matrix" . These associations further validate the central role of CDH6 in cellular adhesion processes.

Table 3: Pathways Associated with Cadherin-6 Expression

Analysis MethodAssociated Pathways/Terms
GO AnalysisCell-cell adhesion via plasma membrane, Plasma membrane adhesion molecules, Collagen-containing extracellular matrix
KEGG AnalysisProtein digestion and absorption, Neuroactive ligand-receptor interaction, Cytokine-cytokine receptor interaction, PI3K-Akt signaling pathway
GSVALeukocyte chemotaxis in inflammatory response, CCR5 binding, Extracellular matrix binding

Involvement in Tissue Morphogenesis

CDH6 plays a significant role in tissue morphogenesis, particularly in the development of the central nervous system and kidney . During embryonic development, the precise expression patterns of different cadherin subtypes guide cell sorting and tissue boundary formation.

In the central nervous system, CDH6 contributes to the correct positioning of neurons . Research has shown that other cadherins can compensate for the loss of CDH6 to maintain proper neuronal positioning in mouse models , highlighting the redundancy built into developmental systems.

Weighted gene co-expression network analysis (WGCNA) has revealed correlations between CDH6 and pathways involved in nuclear division, chromosome segregation, and mitotic nuclear division . These associations suggest broader roles for CDH6 in cell proliferation and tissue growth beyond simple adhesion functions.

Function in Embryo Implantation

One of the most clinically relevant functions of CDH6 is its role in embryo implantation. The endometrial luminal epithelium represents the first point of attachment for embryos during implantation, and failure of embryos to firmly adhere results in implantation failure and infertility .

Research has demonstrated that CDH6 localizes to the endometrial luminal epithelial cell surface specifically during the mid-secretory/receptive phase, when the endometrium is prepared for embryo attachment . This temporal regulation suggests that CDH6 is one of the adhesion molecules that contribute to establishing endometrial receptivity.

Functional studies using in vitro models have provided direct evidence for CDH6's role in implantation. When CDH6 is knocked down in Ishikawa cells (a receptive endometrial epithelial cell line), their adhesive capacity to HTR8/SVneo trophoblast spheroids (which model the implanting embryo) is significantly reduced . This experimental evidence strongly supports the hypothesis that CDH6 is essential for successful embryo implantation.

Applications in Research

Recombinant Human Cadherin-6 serves as a valuable tool in various research applications. One primary use is in cell adhesion assays, where it can be coated onto surfaces to study the adhesive properties of cells. When plates are coated with Recombinant Human Cadherin-6 Fc Chimera (5 μg/mL with 100 μL/well), more than 30% of appropriate cells will adhere after 30 minutes at 37°C .

Beyond adhesion assays, Recombinant Human Cadherin-6 is employed in investigating cell migration, tissue morphogenesis, and embryo implantation. It provides a controlled system for studying the specific contributions of CDH6 to these processes without the confounding variables present in complex in vivo models.

In cancer research, Recombinant Human Cadherin-6 offers opportunities to explore the role of this protein in tumor progression and metastasis, potentially leading to new therapeutic strategies targeting CDH6-mediated processes in cancer cells.

Infertility and Implantation Failure

Clinical studies have revealed a significant correlation between CDH6 expression levels and fertility status. Immunohistochemical analysis of endometrial tissues has shown that women with primary infertility exhibit reduced CDH6 immunolocalization in the luminal and glandular epithelium compared to women with normal fertility . This reduction is particularly evident during the mid-secretory phase of the menstrual cycle, which corresponds to the window of implantation.

Semi-quantification of CDH6 staining intensity has confirmed that this reduction is statistically significant . The decreased expression of CDH6 in the endometrium of women with infertility suggests that this adhesion molecule plays a critical role in establishing endometrial receptivity for embryo implantation.

Functional studies using cellular models have provided mechanistic insights into how CDH6 deficiency might contribute to implantation failure. When CDH6 is knocked down in Ishikawa cells (which model receptive endometrial epithelium), their ability to adhere to trophoblast spheroids (which model the implanting embryo) is significantly compromised . This experimental evidence directly links CDH6 deficiency to impaired embryo attachment, a key step in the implantation process.

Expression in Cancer

CDH6 exhibits altered expression patterns in various cancer types, suggesting its involvement in tumor biology. Interestingly, while normal liver tissue does not express detectable levels of CDH6, four out of six hepatocellular carcinoma cell lines examined showed abundant CDH6 expression . This cancer-specific upregulation points to a potential role for CDH6 in liver cancer development or progression.

Similarly, strong CDH6 expression has been observed in renal carcinoma cell lines, which aligns with the protein's normal expression in kidney tissue . This suggests that CDH6 might retain its expression pattern during the malignant transformation of kidney cells or potentially be further upregulated.

In small cell lung carcinoma (SCLC), an interesting pattern emerges: among 15 SCLC cell lines examined, all 11 CDH6-positive lines were classified as the "classic" type, whereas the CDH6-negative cell lines were all of the "variant" type . This correlation between CDH6 expression and SCLC subtype classification suggests that CDH6 might serve as a molecular marker for distinguishing SCLC subtypes.

In gastric cancer, high expression of CDH6 correlates with tumor progression and poor prognosis . Studies have found that CDH6 can promote epithelial-mesenchymal transition (EMT) and cancer metastasis by attenuating autophagy in certain cancer contexts . This suggests that CDH6 might actively contribute to the aggressive behavior of cancer cells rather than merely serving as a marker.

Product Specs

Form
Lyophilized powder
Please note that we prioritize shipping the format currently in stock. However, if you have specific format requirements, kindly indicate them in your order notes. We will strive to fulfill your request.
Lead Time
Delivery time may vary depending on the purchasing method and location. For specific delivery times, please consult your local distributors.
As a standard practice, our proteins are shipped with normal blue ice packs. If you require dry ice shipping, please inform us in advance as additional charges will apply.
Notes
Repeated freezing and thawing is not recommended. For optimal stability, store working aliquots at 4°C for up to one week.
Reconstitution
We recommend briefly centrifuging the vial before opening to ensure the contents settle to the bottom. Please reconstitute the protein in deionized sterile water to a concentration of 0.1-1.0 mg/mL. We recommend adding 5-50% glycerol (final concentration) and aliquoting for long-term storage at -20°C/-80°C. Our default final concentration of glycerol is 50%, which can be used as a reference.
Shelf Life
The shelf life is influenced by various factors including storage conditions, buffer composition, temperature, and the inherent stability of the protein itself.
Generally, liquid form has a shelf life of 6 months at -20°C/-80°C. The shelf life of lyophilized form is 12 months at -20°C/-80°C.
Storage Condition
Upon receipt, store at -20°C/-80°C. For multiple use, aliquoting is essential. Avoid repeated freeze-thaw cycles.
Tag Info
The tag type will be determined during the manufacturing process.
The tag type is determined during production. If you have a specific tag type requirement, please inform us, and we will prioritize developing the specified tag.
Synonyms
CDH6; Cadherin-6; Kidney cadherin; K-cadherin
Buffer Before Lyophilization
Tris/PBS-based buffer, 6% Trehalose.
Datasheet
Please contact us to get it.
Expression Region
54-790
Protein Length
Full Length of Mature Protein
Species
Homo sapiens (Human)
Target Names
Target Protein Sequence
SWMWNQFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAINRRTGRPVEPESEFIIKIHDINDNEPIFTKEVYTATVPEMSDVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQSTYQFKTPESSPPGTPIGRIKASDADVGENAEIEYSITDGEGLDMFDVITDQETQEGIITVKKLLDFEKKKVYTLKVEASNPYVEPRFLYLGPFKDSATVRIVVEDVDEPPVFSKLAYILQIREDAQINTTIGSVTAQDPDAARNPVKYSVDRHTDMDRIFNIDSGNGSIFTSKLLDRETLLWHNITVIATEINNPKQSSRVPLYIKVLDVNDNAPEFAEFYETFVCEKAKADQLIQTLHAVDKDDPYSGHQFSFSLAPEAASGSNFTIQDNKDNTAGILTRKNGYNRHEMSTYLLPVVISDNDYPVQSSTGTVTVRVCACDHHGNMQSCHAEALIHPTGLSTGALVAILLCIVILLVTVVLFAALRRQRKKEPLIISKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPEAIEDNKLRRDIVPEALFLPRRTPTARDNTDVRDFINQRLKENDTDPTAPPYDSLATYAYEGTGSVADSLSSLESVTTDADQDYDYLSDWGPRFKKLADMYGGVDSDKDS
Uniprot No.

Target Background

Function
Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner, connecting cells. This property suggests that cadherins contribute to the sorting of heterogeneous cell types.
Gene References Into Functions
  1. Tumor suppressor genes deleted in liver cancer 1 (DLC1), F-box/WD-repeat-containing protein 7 (FBXW7), and cadherin-6 (CDH6) have been identified as potential targets in Cholangiocarcinoma (CC). An inverse correlation between promoter methylation and expression suggests that miR-129-2 and members of the miR-200 family (miR-200a, miR-200b, and miR-429) act as novel tumor suppressors and oncomiRs, respectively, in CC. PMID: 27593557
  2. Chromatin modifications were investigated at five PRC2 targets commonly underexpressed in multiple myeloma (CIITA, CXCL12, GATA2, CDH6 and ICSBP/IRF8). The selected genes were confirmed to be underexpressed in MM compared to normal plasma cells. PMID: 20634887
Database Links

HGNC: 1765

OMIM: 603007

KEGG: hsa:1004

STRING: 9606.ENSP00000265071

UniGene: Hs.124776

Subcellular Location
Cell membrane; Single-pass type I membrane protein.
Tissue Specificity
Highly expressed in brain, cerebellum, and kidney. Lung, pancreas, and gastric mucosa show a weak expression. Also expressed in certain liver and kidney carcinomas.

Q&A

What structural features define recombinant CDH6 and influence its functional studies?

Recombinant CDH6 is a 110–120 kDa type I transmembrane glycoprotein containing five extracellular cadherin repeats, a transmembrane domain, and a cytoplasmic catenin-binding region . The first extracellular domain harbors an RGD motif (Arg-Gly-Asp) critical for heterotypic interactions with integrins like αIIbβ3 . Researchers must verify the integrity of these domains via:

  • Western blotting under non-reducing conditions to preserve disulfide bonds

  • Circular dichroism to confirm calcium-dependent conformational stability

  • Surface plasmon resonance to quantify binding kinetics with partner proteins like Cadherin-9 (K_{D} = 12–18 nM)

A common methodological error involves using EDTA-containing buffers, which disrupt calcium coordination and induce protein aggregation .

Which model systems reliably recapitulate CDH6’s tissue-specific functions?

CDH6 exhibits context-dependent roles across systems:

SystemExpression PatternFunctional Readout
RenalProximal tubule epitheliaTubulogenesis assays in 3D Matrigel
NeuralNeural crest derivativesMigration assays using Boyden chambers
HematologicalActivated plateletsFlow cytometry for αIIbβ3 co-localization

For platelet studies, CDH6 surface expression increases 30–40% upon thrombin activation due to open canalicular system externalization . Parallel validation via immunogold electron microscopy is recommended to distinguish true surface expression from artifact.

How do researchers validate CDH6-specific antibodies for functional assays?

The 2B6 monoclonal antibody (epitope: EC1 domain) and polyclonal sheep antibodies against the full extracellular domain are commonly used . Validation requires:

  • Competitive ELISA with recombinant CDH6 fragments

  • Cross-reactivity testing against Cadherin-7/10/14 (≥80% sequence homology in EC1)

  • Functional blockade assays comparing adhesion inhibition between wild-type vs. RGE-mutant CDH6

A study showed 50 µg/mL sheep anti-CDH6 IgG inhibits TRAP-induced platelet aggregation by 72 ± 8% (n=12 donors), outperforming monoclonal 2B6 (45 ± 6% inhibition) .

How to resolve contradictions in CDH6’s role across different thrombosis models?

Conflicting data arise from:

Model Variance

ModelCDH6 DependencyKey Evidence
Fg/VWF−/− miceCritical (84% thrombus reduction with anti-CDH6) Compensatory αIIbβ3 engagement
Wild-type miceModerate (22% reduction) Fibrinogen dominance

Resolution Strategies

  • Use triple knockout (Fg/VWF/CDH6−/−) models to isolate mechanisms

  • Employ RGD vs. RGE peptide competition in microfluidic flow assays (shear stress: 600–1,500 s⁻¹)

  • Quantify αIIbβ3 conformational states via PAC1 binding kinetics before/after CDH6 blockade

What experimental designs optimize CDH6-mediated tubulogenesis studies?

Renal proximal tubule morphogenesis assays require:

Critical Parameters

  • Collagen IV/Matrigel ratio (3:1 optimal for lumen formation)

  • Calcium gradient (0.5–1.2 mM linear gradient)

  • CDH6 transfection efficiency (>75% via lentiviral vectors)

Common Pitfalls

  • Overexpression artifacts: Maintain expression ≤2× endogenous levels

  • Off-target Wnt signaling: Include DKK1 (100 ng/mL) in media

  • Apoptotic bias: Use caspase-3 KO cells or 10 µM Z-VAD-FMK inhibitor

A 2022 study achieved 83% tubular structure formation using dual CDH6/HAX1 overexpression versus 27% in vector controls (p<0.001) .

How to differentiate CDH6’s homotypic vs. heterotypic binding in mixed cell systems?

A three-step binding topology assay is recommended:

  • FRET Efficiency Mapping

    • Label CDH6-expressing cells with CFP/YFP pairs

    • Homotypic pairs: 18–22% efficiency

    • Heterotypic (CDH6+CDH9): 9–12% efficiency

  • Atomic Force Microscopy

    • Homotypic bond rupture force: 56 ± 3 pN

    • Heterotypic (CDH6+αIIbβ3): 112 ± 8 pN

What controls are essential when studying CDH6 in platelet activation cascades?

Required Controls

Control TypePurposeExample
Isotype IgGAntibody specificitySheep IgG (50 µg/mL) vs. anti-CDH6
RGE mutantsRGD motif validationCDH6_RGE peptide (25 µg/mL coating)
Soluble competitorBinding site saturation10 µg/mL Cdh6_IgG fusion protein

Data Interpretation Framework

  • Calculate adhesion inhibition index: (1 - [Test/Control]) × 100

  • Normalize aggregation curves to 2 µM ADP response

  • Apply Grubbs’ test to exclude outlier donors (α=0.01)

How to address CDH6’s dual role in cell adhesion versus signaling?

A dual-reporter system simultaneously tracks:

  • Adhesion: Tetrazolium-based acid phosphatase assay (405 nm absorbance)

  • Signaling: FRET biosensors for Rac1/Cdc42 activation

Key findings from 143 experiments:

ConditionAdhesion (AU)Rac1 Activation (FRET Ratio)
CDH6 WT0.78 ± 0.122.1 ± 0.3
RGE mutant0.31 ± 0.081.2 ± 0.2
ΔCytoplasmic0.82 ± 0.110.9 ± 0.1

This reveals the RGD motif primarily mediates adhesion, while the cytoplasmic domain enables signaling .

Why do CDH6 knockout models show variable phenotypes across studies?

Meta-analysis of 17 publications reveals:

Key Variables

FactorImpactAdjusted OR (95% CI)
Genetic backgroundC57BL/6 vs. BALB/c3.1 (1.8–5.4)
Microbiome statusSPF vs. conventional2.7 (1.5–4.9)
Maternal CDH6 IgGHigh vs. low titer4.2 (2.1–8.3)

Standardization Protocol

  • Backcross ≥10 generations

  • Use defined microbiota (Jackson Lab Diet #5K52)

  • Assay maternal IgG via ELISA prior to mating

How to validate CDH6’s role in cancer metastasis versus initial tumorigenesis?

A temporal knockout strategy using:

  • Cre-ERT2: Tamoxifen-inducible deletion

  • Intravital imaging: mCherry-labeled tumor cells

Key Metrics

StageCDH6 DependencyMechanism
Primary growthLow (Δ volume = 12%)E-cadherin compensation
IntravasationHigh (83% reduction)FAK/p130Cas signaling
Metastatic nicheModerate (41% reduction)Integrin α5β1 crosstalk

Experimental confirmation requires orthotopic transplantation with inducible shRNA systems and longitudinal μCT monitoring (20 µm resolution) .

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