Recombinant Lemna minor ATP synthase subunit c, chloroplastic (atpH)

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Description

Primary Features

ParameterDetails
Gene NameatpH
UniProt IDA9L983
Protein LengthFull-length (1–81 amino acids)
Secondary StructureAlpha-helical
Chloroplastic LocalizationEmbedded in thylakoid membrane, part of F₀ sector

Amino Acid Sequence:
MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM EALTIYGLVVALALLFANPFV

Role in ATP Synthase

Subunit c forms a homooligomeric ring (cₙ) in the F₀ sector, where:

  1. Proton Translocation: Each c subunit contains a proton-binding site, driving rotation of the c-ring during proton flux .

  2. Stoichiometric Variability: The number of c subunits (n) determines the H⁺/ATP ratio. Organism-specific n values (e.g., c₁₀–c₁₅) influence ATP synthesis efficiency .

  3. Functional Coupling: Rotation of the c-ring drives the γ-subunit stalk, enabling ATP synthesis via conformational changes in the F₁-ATPase head .

Production Methods

MethodDetails
Host SystemE. coli (BL21 derivatives)
Fusion TagsN-terminal His-tag or Maltose-Binding Protein (MBP)
Expression OptimizationCodon-optimized gene constructs for eukaryotic membrane proteins

Purification Workflow:

  1. Solubility Enhancement: MBP fusion for soluble expression .

  2. Tag Cleavage: Protease-mediated removal of MBP .

  3. Chromatography: Reversed-phase chromatography for hydrophobic purification .

Purity: >90% confirmed via SDS-PAGE .

Key Studies

  1. Stoichiometry Investigations:

    • Recombinant c subunits enable reconstitution of cₙ rings to study proton-to-ATP coupling ratios .

    • Spinach (Spinacia oleracea) c subunits demonstrated correct alpha-helical structure post-purification .

  2. Functional Non-Redundancy:

    • Mitochondrial subunit c isoforms (e.g., P1, P2, P3) exhibit distinct targeting peptides, influencing respiratory chain assembly .

    • Knockdown of individual isoforms disrupts ATP synthesis, confirming functional specificity .

  3. Proton Translocation Mechanisms:

    • Subunit c interacts with subunit a (Atp6 homolog) to facilitate proton pumping .

    • Variations in c-ring stoichiometry (e.g., c₁₀ vs. c₁₅) alter H⁺/ATP ratios, adapting ATP synthesis to metabolic demands .

Product Specs

Form
Lyophilized powder
Note: We will prioritize shipping the format currently in stock. However, if you have specific format requirements, please indicate them during order placement, and we will accommodate your request.
Lead Time
Delivery time may vary depending on the purchasing method or location. For precise delivery estimates, please consult your local distributors.
Note: All protein shipments are standardly accompanied by blue ice packs. If you require dry ice packaging, please inform us in advance, as additional fees will apply.
Notes
Repeated freezing and thawing is not recommended. Store working aliquots at 4°C for up to one week.
Reconstitution
We recommend centrifuging the vial briefly before opening to ensure the contents settle at the bottom. Reconstitute the protein in deionized sterile water to a concentration of 0.1-1.0 mg/mL. We suggest adding 5-50% glycerol (final concentration) and aliquoting for long-term storage at -20°C/-80°C. Our default glycerol concentration is 50%. Customers may use this as a reference.
Shelf Life
The shelf life is influenced by several factors, including storage conditions, buffer composition, temperature, and the inherent stability of the protein itself.
Generally, liquid form has a shelf life of 6 months at -20°C/-80°C. Lyophilized form has a shelf life of 12 months at -20°C/-80°C.
Storage Condition
Store at -20°C/-80°C upon receipt. Aliquoting is essential for multiple uses. Avoid repeated freeze-thaw cycles.
Tag Info
Tag type is determined during the manufacturing process.
The tag type is determined during the production process. If you have a specific tag type in mind, please inform us, and we will prioritize its development.
Synonyms
atpH; ATP synthase subunit c, chloroplastic; ATP synthase F(0 sector subunit c; ATPase subunit III; F-type ATPase subunit c; F-ATPase subunit c; Lipid-binding protein
Buffer Before Lyophilization
Tris/PBS-based buffer, 6% Trehalose.
Datasheet
Please contact us to get it.
Expression Region
1-81
Protein Length
full length protein
Species
Lemna minor (Common duckweed)
Target Names
atpH
Target Protein Sequence
MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM EALTIYGLVVALALLFANPFV
Uniprot No.

Target Background

Function
F(1)F(0) ATP synthase catalyzes ATP synthesis from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains: F(1), containing the extramembraneous catalytic core, and F(0), containing the membrane proton channel, linked by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled, via a rotary mechanism of the central stalk subunits, to proton translocation.; This protein is a key component of the F(0) channel and plays a direct role in transmembrane translocation. A homomeric c-ring, composed of 10-14 subunits, forms the central stalk rotor element along with the F(1) delta and epsilon subunits.
Protein Families
ATPase C chain family
Subcellular Location
Plastid, chloroplast thylakoid membrane; Multi-pass membrane protein.

Q&A

What is ATP synthase subunit c in Lemna minor and what is its function?

ATP synthase subunit c, chloroplastic (atpH) in Lemna minor is a critical component of the F0 portion of ATP synthase, an essential enzyme complex involved in energy transduction during photosynthesis. This protein functions as part of the transmembrane proton channel that facilitates proton movement across the thylakoid membrane, which drives ATP synthesis in the chloroplast. The protein is relatively small (81 amino acids) with a highly hydrophobic character, reflecting its membrane-embedded nature . This subunit is encoded by the atpH gene located in the chloroplast genome, which has been well-preserved during the evolution of duckweed species, suggesting its fundamental importance in chloroplast function .

The primary function of ATP synthase subunit c is to form the c-ring structure in the F0 sector, which rotates as protons pass through the complex, ultimately driving conformational changes in the F1 sector that catalyze ATP synthesis. This rotation mechanism represents a remarkable example of biological energy conversion, transforming the proton gradient established during photosynthetic electron transport into chemical energy in the form of ATP. The high conservation of this protein across plant species underscores its essential role in bioenergetic processes.

How is recombinant Lemna minor ATP synthase subunit c, chloroplastic (atpH) protein typically produced?

Recombinant Lemna minor ATP synthase subunit c is typically produced using heterologous expression systems, with E. coli being the most common host organism for protein production . The process involves several key steps that researchers should consider when planning experiments:

  • Gene Cloning: The atpH gene sequence (coding for amino acids 1-81) is amplified from Lemna minor chloroplast DNA or synthesized based on the known sequence.

  • Vector Construction: The gene is inserted into an expression vector containing an N-terminal His-tag for purification purposes .

  • Host Transformation: The recombinant vector is transformed into E. coli expression hosts, with BL21(DE3) or similar strains commonly used for membrane protein expression.

  • Expression Conditions: Optimization of growth temperature, induction timing, and inducer concentration is critical for maximizing protein yield while maintaining proper folding.

  • Protein Extraction and Purification: Given the hydrophobic nature of ATP synthase subunit c, specialized detergent-based extraction protocols are employed, followed by affinity chromatography using the His-tag .

The resulting purified protein typically achieves greater than 90% purity as determined by SDS-PAGE analysis . For functional studies, researchers should consider additional purification steps such as size exclusion chromatography to ensure homogeneity of the protein preparation.

How should recombinant Lemna minor ATP synthase subunit c be stored and reconstituted for optimal stability?

Proper storage and reconstitution of recombinant Lemna minor ATP synthase subunit c are crucial for maintaining protein functionality in research applications. Based on established protocols, the following guidelines are recommended:

Storage Conditions:

  • Long-term storage: Store the lyophilized powder at -20°C to -80°C upon receipt .

  • Working aliquots: Store at 4°C for up to one week .

  • Repeated freeze-thaw cycles should be strictly avoided as they can significantly reduce protein stability and activity .

Reconstitution Protocol:

  • Centrifuge the vial briefly before opening to ensure all material is at the bottom .

  • Reconstitute the lyophilized protein in deionized sterile water to a concentration of 0.1-1.0 mg/mL .

  • Add glycerol to a final concentration of 5-50% (recommendation: 50%) as a cryoprotectant .

  • Aliquot the reconstituted protein into small volumes to minimize freeze-thaw cycles.

Buffer Considerations:
The protein is typically supplied in a Tris/PBS-based buffer at pH 8.0 containing 6% trehalose as a stabilizing agent . When designing experiments, researchers should consider the compatibility of this buffer with their specific applications and modify accordingly.

Stability Assessment:
Researchers should verify protein integrity after reconstitution using techniques such as:

  • SDS-PAGE to confirm the expected molecular weight (approximately 8-9 kDa)

  • Circular dichroism to assess secondary structure preservation

  • Activity assays where applicable

Following these storage and reconstitution guidelines will ensure optimal protein stability and reproducibility in experimental procedures.

What experimental approaches are optimal for studying Lemna minor ATP synthase subunit c function?

Investigating the function of Lemna minor ATP synthase subunit c requires specialized experimental approaches that address both its membrane-associated nature and its role in the larger ATP synthase complex. Several complementary methodologies are recommended for comprehensive functional characterization:

Reconstitution into Proteoliposomes:

  • Purified recombinant ATP synthase subunit c can be reconstituted into artificial liposomes with defined lipid compositions.

  • This system allows measurement of proton translocation activity using pH-sensitive fluorescent dyes.

  • Comparison of proton flux rates between wild-type and mutant proteins can provide insights into structure-function relationships.

Assembly Studies with Other ATP Synthase Subunits:

  • Co-expression of subunit c with other F0 components to study oligomerization and c-ring formation.

  • Pull-down assays using the His-tagged subunit c to identify interaction partners.

  • Blue native PAGE to visualize intact complexes and subcomplexes.

Biophysical Characterization:

  • Solid-state NMR spectroscopy to investigate the protein structure and dynamics in lipid environments.

  • Hydrogen/deuterium exchange mass spectrometry to probe accessible regions and conformational changes.

  • Atomic force microscopy to visualize c-ring structures at the nanoscale.

Functional Assays in Reconstituted Systems:

  • ATP synthesis activity measurements in reconstituted proteoliposomes containing the complete ATP synthase complex.

  • Proton pumping assays using artificial pH gradients.

  • Rotational analysis using fluorescently labeled subunits to directly observe the mechanistic operation of the enzyme.

These approaches provide complementary data that, when integrated, offer a comprehensive understanding of ATP synthase subunit c function within the context of the complete enzyme complex and energy transduction processes in chloroplasts.

How can researchers perform site-directed mutagenesis of Lemna minor ATP synthase subunit c to study structure-function relationships?

Site-directed mutagenesis of Lemna minor ATP synthase subunit c represents a powerful approach for dissecting structure-function relationships within this critical bioenergetic protein. A systematic mutagenesis strategy should consider the following aspects:

Target Residue Selection:

  • Conserved proton-binding site: The acidic residue (Glu or Asp) in the second transmembrane helix that participates in proton translocation.

  • Residues lining the transmembrane helices that may contribute to c-ring formation and stability.

  • Interface residues that interact with other subunits of the ATP synthase complex.

  • Polar loop region residues that may influence the mechanical coupling between F0 and F1 sectors.

Mutagenesis Protocol:

  • Design primers containing the desired mutations following standard PCR-based site-directed mutagenesis protocols.

  • Introduce mutations into the expression vector containing the His-tagged atpH gene.

  • Verify sequences to confirm successful mutagenesis.

Expression and Purification Strategy:

  • Express wild-type and mutant proteins under identical conditions to allow direct comparison.

  • Optimize purification protocols for each mutant, as some mutations may affect protein solubility or stability.

  • Compare expression levels and purification yields to assess potential impacts on protein folding.

Functional Characterization:

  • Assess protein integration into membranes using flotation assays or membrane partition experiments.

  • Measure proton translocation activity of reconstituted proteins.

  • Evaluate assembly into c-rings using native gel electrophoresis.

  • When possible, incorporate mutant subunits into complete ATP synthase complexes to assess effects on ATP synthesis activity.

Structural Analysis:

  • Use circular dichroism spectroscopy to assess potential changes in secondary structure.

  • Apply solution NMR or solid-state NMR techniques for detailed structural comparisons between wild-type and mutant proteins.

  • Consider computational modeling to predict structural impacts of mutations.

This comprehensive approach enables researchers to establish clear connections between specific amino acid residues and their contributions to the various aspects of ATP synthase subunit c function, from protein folding to proton translocation and enzyme catalysis.

What are the challenges in expressing and purifying functional Lemna minor ATP synthase subunit c protein?

Expressing and purifying functional Lemna minor ATP synthase subunit c protein presents several significant challenges that researchers must address to obtain biologically relevant results:

Expression Challenges:

  • Membrane protein toxicity: Overexpression of membrane proteins like ATP synthase subunit c can be toxic to host cells, resulting in reduced growth rates and protein yields.

  • Inclusion body formation: The hydrophobic nature of the protein often leads to aggregation and inclusion body formation in E. coli, requiring optimization of expression conditions or refolding protocols.

  • Proper membrane insertion: Ensuring correct folding and insertion into host membranes is critical but challenging due to differences between plant chloroplast and bacterial membrane environments.

Purification Challenges:

  • Detergent selection: Identifying appropriate detergents that efficiently extract the protein while maintaining its native conformation is crucial. A systematic screen of detergents (e.g., DDM, LDAO, OG) is often necessary.

  • Protein stability: The protein may exhibit limited stability once removed from the membrane environment, necessitating careful optimization of buffer conditions.

  • Oligomeric state maintenance: Preserving the native oligomeric state (c-ring) during purification is challenging but essential for functional studies.

Functional Verification Challenges:

  • Activity assays: Developing reliable assays to verify the functionality of the purified protein in isolation from the complete ATP synthase complex.

  • Reconstitution efficiency: Achieving consistent and efficient reconstitution into proteoliposomes for functional studies.

  • Post-translational modifications: Identifying and accounting for any potential differences in post-translational modifications between the recombinant protein and the native form.

Recommended Solutions:

  • Use specialized E. coli strains designed for membrane protein expression (e.g., C41(DE3), C43(DE3)).

  • Employ fusion partners (e.g., MBP, SUMO) to enhance solubility.

  • Optimize expression temperature (typically lowering to 16-20°C) and inducer concentration.

  • Consider cell-free expression systems for difficult-to-express variants.

  • Implement stability screening assays to identify optimal buffer and detergent conditions.

  • Validate protein functionality through complementary approaches including spectroscopic methods and reconstitution assays.

Addressing these challenges requires a multifaceted approach combining molecular biology techniques, biochemical methods, and biophysical characterization to ensure that the purified protein accurately represents its native state and function.

How does Lemna minor ATP synthase subunit c compare structurally and functionally to homologs in other plant species?

Comparative analysis of ATP synthase subunit c across plant species provides valuable insights into evolutionary conservation and functional specialization. The Lemna minor ATP synthase subunit c can be compared with homologs from other plants along several dimensions:

Sequence Conservation Analysis:

SpeciesSequence Identity (%)Key DifferencesConserved Motifs
Lemna minor100 (reference)-Proton-binding site, membrane-spanning domains
Spirodela polyrhiza~95-98Minor variations in N-terminal regionComplete conservation of functional residues
Arabidopsis thaliana~80-85Greater divergence in loop regionsConservation of all catalytically essential residues
Rice (Oryza sativa)~75-80Variations in both transmembrane helicesProton-binding site strictly conserved
Moss (Physcomitrella patens)~70-75More extensive differences in helical regionsFunctional motifs maintained

This high degree of sequence conservation, particularly for the proton-binding site and transmembrane domains, reflects the fundamental importance of ATP synthase function across plant lineages . The chloroplast genomes of different duckweed genera show similar gene composition and structure, suggesting that gene content is highly conserved in duckweeds .

Structural Comparisons:

Functional Adaptations:

  • Subtle sequence variations may reflect adaptations to different environmental conditions, such as pH optima or temperature ranges.

  • Differences in regulatory mechanisms and post-translational modifications can influence ATP synthase activity in response to environmental cues.

  • The integration of ATP synthase into thylakoid membranes may show species-specific characteristics related to membrane composition.

Evolutionary Implications:
The comparison of Lemna minor ATP synthase subunit c with homologs from other plant species reveals that while rapid nucleotide substitutions and abundant insertions and deletions have occurred during chloroplast DNA evolution in duckweed, the gene content remains highly conserved . This evolutionary pattern underscores the critical importance of maintaining ATP synthase function while allowing for fine-tuning of performance characteristics.

This comparative analysis provides a framework for understanding both the fundamental conservation of ATP synthase function and the subtle adaptations that may contribute to species-specific bioenergetic characteristics.

What are the best practices for optimizing expression of recombinant Lemna minor ATP synthase subunit c in E. coli?

Optimizing the expression of recombinant Lemna minor ATP synthase subunit c in E. coli requires systematic adjustment of multiple parameters to maximize protein yield while maintaining proper folding. The following best practices are recommended based on established protocols:

Expression Vector Selection:

  • Use vectors with tightly controlled promoters (e.g., T7 lac) to minimize basal expression that might be toxic.

  • Consider vectors that add solubility-enhancing fusion partners (e.g., SUMO, MBP) at the N-terminus, in addition to the His-tag used for purification .

  • Include appropriate signal sequences if targeting to E. coli membranes is desired.

Host Strain Optimization:

  • Specialized strains for membrane protein expression: C41(DE3), C43(DE3), or Lemo21(DE3).

  • Strains with altered membrane composition may improve insertion of recombinant membrane proteins.

  • Consider strains with additional tRNAs for rare codons if codon usage differs significantly between Lemna minor and E. coli.

Expression Conditions Matrix:
The following parameters should be systematically tested in a matrix approach:

ParameterRange to TestOptimization Goal
Temperature16°C, 20°C, 25°C, 30°CLower temperatures often improve folding
Inducer Concentration0.01-1.0 mM IPTGMinimal effective concentration
Induction OD6000.4-0.8Balance between cell density and protein expression
Induction Duration4h, 8h, overnightMaximum yield of properly folded protein
Media CompositionLB, TB, 2xYT, Minimal mediaInfluence on membrane composition

Membrane Integration Enhancement:

  • Addition of specific phospholipids to the growth medium.

  • Supplementation with molecular chaperones through co-expression.

  • Inclusion of low concentrations of detergents in the growth medium to facilitate membrane protein folding.

Extraction and Purification Considerations:

  • Test multiple detergents for extraction efficiency (e.g., DDM, LDAO, OG).

  • Optimize detergent concentration to effectively solubilize the protein without denaturation.

  • Include stabilizing agents (e.g., glycerol, specific lipids) in purification buffers .

Monitoring Expression:

  • Western blot analysis with anti-His antibodies to detect the target protein.

  • Membrane fractionation to confirm proper localization.

  • Small-scale purification trials to assess yield and purity before scaling up.

By systematically optimizing these parameters, researchers can develop a robust protocol for expressing functional Lemna minor ATP synthase subunit c in E. coli, providing sufficient quantities of protein for structural and functional studies.

How can researchers verify the structural integrity and functionality of purified recombinant Lemna minor ATP synthase subunit c?

Verifying both the structural integrity and functionality of purified recombinant Lemna minor ATP synthase subunit c is essential for ensuring experimental validity. A comprehensive validation approach should incorporate multiple complementary techniques:

Structural Integrity Assessment:

  • SDS-PAGE and Western Blotting:

    • Confirm the expected molecular weight (~8-9 kDa)

    • Verify protein purity (greater than 90% as indicated in the product specifications)

    • Check for degradation products or aggregation

  • Secondary Structure Analysis:

    • Circular dichroism (CD) spectroscopy to confirm the expected alpha-helical content

    • Compare CD spectra with predicted secondary structure based on sequence analysis

    • Thermal stability measurements to determine melting temperature (Tm)

  • Tertiary Structure Assessment:

    • Intrinsic fluorescence spectroscopy to monitor the environment of aromatic residues

    • Limited proteolysis to probe folding and accessibility of cleavage sites

    • Size exclusion chromatography to assess oligomeric state

  • Membrane Insertion Verification:

    • Liposome flotation assays to confirm membrane association

    • Oriented CD to assess orientation in membranes

    • Fluorescence quenching experiments to probe membrane topology

Functional Validation:

  • Proton Binding and Transport:

    • pH-dependent spectroscopic changes to detect protonation of key residues

    • Proton flux measurements in reconstituted proteoliposomes

    • H⁺/D⁺ exchange rates determined by mass spectrometry

  • Assembly into c-rings:

    • Native PAGE to visualize c-ring formation

    • Cross-linking studies to capture oligomeric states

    • Electron microscopy to directly visualize ring structures

  • Integration with Other ATP Synthase Components:

    • Pull-down assays to verify interactions with other subunits

    • Reconstitution with purified F1 sector to assess functional coupling

    • ATP synthesis activity in reconstituted systems

Data Interpretation Framework:

Validation LevelTechniquesSuccess Criteria
PrimarySDS-PAGE, Western blotCorrect MW, >90% purity
SecondaryCD spectroscopy, SECAlpha-helical content, expected oligomeric state
TertiaryMembrane insertion assaysStable integration into lipid bilayers
FunctionalProton binding, c-ring assemblySpecific protonation, oligomerization
CompleteReconstitution with F1, ATP synthesisATP production dependent on proton gradient

This multilevel validation approach ensures that the purified protein not only has the correct primary sequence and folding but also retains the functional properties essential for its biological role in ATP synthesis. Researchers should apply these methods as a quality control pipeline before proceeding with detailed mechanistic studies.

What analytical techniques are most effective for studying protein-protein interactions involving Lemna minor ATP synthase subunit c?

Investigating protein-protein interactions involving Lemna minor ATP synthase subunit c requires specialized techniques that account for its membrane-embedded nature while providing meaningful interaction data. The following analytical approaches are particularly effective:

In Vitro Interaction Analysis:

  • Cross-linking Mass Spectrometry (XL-MS):

    • Chemical cross-linkers of varying lengths can capture direct interactions

    • Mass spectrometry analysis identifies cross-linked peptides and interaction sites

    • Zero-length cross-linkers like EDC reveal direct contact points between proteins

  • Surface Plasmon Resonance (SPR):

    • Immobilize His-tagged ATP synthase subunit c on Ni-NTA sensor chips

    • Flow potential interaction partners to measure binding kinetics

    • Determine association/dissociation constants for quantitative interaction assessment

  • Förster Resonance Energy Transfer (FRET):

    • Label ATP synthase subunit c and potential partners with fluorophore pairs

    • Measure energy transfer efficiency as an indicator of proximity

    • Perform in detergent micelles or reconstituted membrane systems

  • Isothermal Titration Calorimetry (ITC):

    • Directly measure thermodynamic parameters of binding

    • Determine stoichiometry, binding affinity, and enthalpy changes

    • Requires careful detergent matching between protein samples

Membrane-Based Interaction Analysis:

  • Native Membrane Nanodisc Systems:

    • Reconstitute ATP synthase subunit c into nanodiscs with defined lipid composition

    • Add potential interaction partners and analyze complex formation

    • Maintain native-like membrane environment while enabling purification and analysis

  • Biolayer Interferometry with Lipid Capture:

    • Immobilize biotinylated liposomes containing ATP synthase subunit c

    • Monitor interactions with soluble domains of other ATP synthase components

    • Quantify binding in a membrane-like environment

  • Cryo-Electron Microscopy:

    • Visualize ATP synthase complexes at near-atomic resolution

    • Map the position of subunit c within the complex

    • Identify interaction interfaces with neighboring subunits

Computational and Hybrid Approaches:

  • Molecular Docking and Molecular Dynamics:

    • Generate interaction models based on available structural data

    • Simulate dynamic interactions in explicit membrane environments

    • Predict key interaction residues for experimental validation

  • Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS):

    • Map regions of ATP synthase subunit c that become protected upon complex formation

    • Identify interaction interfaces without the need for protein modification

    • Compatible with detergent-solubilized membrane proteins

Data Integration Framework:

TechniqueInformation ProvidedAdvantagesLimitations
XL-MSDirect contact pointsWorks in native membranesResolution limited by linker length
SPRBinding kineticsQuantitative dataRequires immobilization
FRETSpatial proximityCan be done in living cellsDistance constraints only
NanodiscsNative-like interactionsControlled lipid environmentComplex preparation
Cryo-EMStructural contextHigh-resolution structural dataRequires stable complexes
HDX-MSInteraction footprintsNo protein modification neededLower resolution

By combining multiple complementary techniques, researchers can build a comprehensive picture of how ATP synthase subunit c interacts with other components of the ATP synthase complex and potentially with regulatory proteins, providing insights into the assembly, regulation, and function of this essential bioenergetic machine.

How can Lemna minor ATP synthase subunit c be used in bioenergetics research?

Lemna minor ATP synthase subunit c offers unique opportunities for advancing bioenergetics research, particularly in understanding energy transduction mechanisms in photosynthetic organisms. Several promising research applications include:

Model System for Proton Transport Studies:

  • The well-defined structure of ATP synthase subunit c makes it an excellent model for studying the fundamental principles of proton transport across biological membranes.

  • Site-directed mutagenesis of key residues can illuminate the molecular mechanism of proton binding, translocation, and release.

  • Comparative studies between Lemna minor and other species can reveal evolutionary adaptations in proton transport mechanisms.

Structural Biology of Membrane Protein Complexes:

  • The relatively small size and high stability of ATP synthase subunit c make it amenable to structural studies using techniques like NMR, X-ray crystallography, and cryo-EM.

  • Structural information can be integrated into molecular models of the complete ATP synthase complex.

  • Studies of c-ring assembly provide insights into membrane protein oligomerization principles.

Bioenergetic Adaptations in Aquatic Plants:

  • Lemna minor ATP synthase subunit c can be studied under various environmental conditions to understand adaptations to different light regimes, temperature fluctuations, and nutrient availability.

  • Comparative analysis with terrestrial plants may reveal specific adaptations for aquatic photosynthesis.

  • Investigation of regulatory mechanisms controlling ATP synthase activity in response to environmental cues.

Biomimetic Energy Conversion:

  • Understanding the principles of ATP synthase function could inspire the development of artificial molecular motors and nanoscale energy conversion devices.

  • Reconstituted systems containing Lemna minor ATP synthase components could serve as templates for designing biomimetic energy transduction systems.

  • The high efficiency of biological energy conversion in ATP synthase provides valuable design principles for sustainable energy technologies.

Integration with Systems Biology:

  • Incorporating ATP synthase function into metabolic models of Lemna minor to predict energy production under various conditions.

  • Understanding how ATP synthase regulation coordinates with other aspects of chloroplast function.

  • Developing predictive models of how environmental changes impact bioenergetic performance in aquatic plants.

These research applications highlight the versatility of Lemna minor ATP synthase subunit c as a model system for fundamental bioenergetic research, with potential implications for understanding photosynthetic energy conversion, membrane protein structure and function, and the development of bio-inspired technologies.

What is the potential of Lemna minor as a bioreactor for producing recombinant proteins?

Lemna minor (common duckweed) has emerged as a promising plant-based bioreactor system with several advantages for recombinant protein production, including ATP synthase subunit c and other proteins of interest. The potential of this aquatic plant as a bioreactor system is supported by recent research advances:

Advantages of Lemna minor as a Bioreactor:

  • Rapid Growth and High Biomass Production:

    • Lemna minor is the smallest and fastest-growing aquatic plant, capable of doubling its biomass in 1-2 days under optimal conditions .

    • High growth rate translates to rapid accumulation of recombinant proteins, enabling cost-effective production.

    • Simple cultivation requirements with minimal inputs compared to traditional cell culture systems.

  • Simple Genetic Manipulation:

    • Established genetic transformation protocols enable efficient expression of recombinant proteins .

    • The relatively small genome size of Lemna minor (472 Mb) with 22,382 protein-coding genes facilitates genetic engineering approaches .

    • Chloroplast transformation allows for high-level expression of proteins directly in the chloroplast compartment.

  • Biosafety Advantages:

    • Contained aquatic growth minimizes risk of environmental spread compared to terrestrial plant systems.

    • Limited pollen production reduces concerns about transgene escape.

    • Plant-based systems eliminate risks associated with mammalian pathogens or endotoxins.

Established Transformation Systems:

Transformation MethodEfficiencyTarget TissueApplications
Agrobacterium-mediatedModerate to highFrond tissueNuclear transformation
Biolistic transformationVariableCallus, frond tissueNuclear and chloroplast transformation
PEG-mediated transformationHigh for protoplastsProtoplastsTransient expression

Research has established efficient tissue culture cycles for various Lemna species, including Lemna minor, which is crucial for transformation and regeneration processes . Protocols combining N6-(2-Isopentenyl) adenine (2IP) (1 mg/L) and 2,4-dichlorophenoxyacetic (2,4-D) (10 mg/L) effectively induce callus formation, while indole acetic acid (4 mg/L) and kinetin (1 mg/L) successfully induce frond regeneration .

Current Applications and Future Potential:

  • Pharmaceutical Proteins:

    • Production of antibodies, vaccines, and therapeutic proteins with appropriate post-translational modifications.

    • Potential for oral delivery of therapeutics through bioencapsulation in plant cells.

  • Industrial Enzymes:

    • Cost-effective production of enzymes for biofuel production, food processing, and other industrial applications.

    • Expression of thermostable or specialized enzymes that may be difficult to produce in bacterial systems.

  • Research Reagents:

    • Production of recombinant proteins like ATP synthase components for structural and functional studies.

    • Expression of isotope-labeled proteins for NMR studies.

  • Metabolic Engineering:

    • Modification of metabolic pathways to produce valuable compounds or to enhance nutritional content.

    • Production of specialized lipids or secondary metabolites with pharmaceutical potential.

The potential of Lemna minor as a bioreactor system is supported by recent breakthroughs in genetic background understanding, transformation systems development, and successful protein expression demonstrations . As a chassis plant, duckweed offers a sustainable and scalable platform for diverse biotechnological applications, including the production of ATP synthase components and other proteins of scientific and commercial interest.

How might research on Lemna minor ATP synthase contribute to understanding energy transduction in photosynthetic organisms?

Research on Lemna minor ATP synthase subunit c has significant potential to advance our understanding of energy transduction in photosynthetic organisms, offering insights that span from molecular mechanisms to ecosystem-level energetics:

Molecular Mechanics of Rotary Catalysis:

  • The c-ring of ATP synthase, composed of multiple subunit c proteins, functions as a molecular motor driven by proton flow.

  • Studies of Lemna minor ATP synthase subunit c can reveal specific adaptations that optimize rotary catalysis in aquatic photosynthetic environments.

  • Comparison with ATP synthases from diverse organisms can illuminate fundamental principles and specialized adaptations in this molecular machine.

Regulation of Bioenergetic Efficiency:

  • ATP synthase activity must be precisely regulated to match energetic demands with photosynthetic electron flow.

  • Investigation of regulatory mechanisms affecting Lemna minor ATP synthase can reveal how aquatic plants optimize energy conversion under variable environmental conditions.

  • Understanding the molecular basis of ATP synthase regulation provides insights into the coordination of photosynthetic and respiratory processes.

Evolutionary Adaptations in Energy Conversion:

  • Comparative analysis of ATP synthase components across plant species can reveal evolutionary trajectories and selective pressures.

  • The chloroplast genome of duckweeds shows conservation in gene content despite rapid nucleotide substitutions and abundant insertions and deletions, suggesting strong functional constraints on ATP synthase components .

  • Duckweed's adaptation to diverse aquatic environments may have selected for specific bioenergetic optimizations reflected in ATP synthase structure and function.

Integration with Systems-Level Bioenergetics:

  • ATP synthase operation must be coordinated with photosynthetic electron transport, carbon fixation, and metabolic demands.

  • Research on Lemna minor ATP synthase can illuminate how these processes are integrated at the organelle and cellular levels.

  • Metabolic flux analysis incorporating ATP synthase activity can provide quantitative models of energy flow in photosynthetic organisms.

Environmental Adaptation of Bioenergetic Processes:

  • Lemna minor thrives in diverse aquatic environments, suggesting specialized adaptations in energy transduction mechanisms.

  • Studies of ATP synthase function under different environmental conditions (light regimes, temperature, nutrient availability) can reveal adaptive responses.

  • Understanding the plasticity of bioenergetic processes helps predict how photosynthetic organisms may respond to changing environmental conditions.

Translational Applications:

  • Insights from Lemna minor ATP synthase research may inspire biomimetic approaches to artificial photosynthesis and energy conversion technologies.

  • Understanding the optimization of bioenergetic efficiency in natural systems provides design principles for sustainable energy technologies.

  • Manipulation of ATP synthase function could potentially enhance photosynthetic efficiency and productivity in agricultural or biofuel applications.

Research on Lemna minor ATP synthase thus serves as a window into the fundamental processes of biological energy conversion, with implications ranging from basic understanding of photosynthetic bioenergetics to applications in biotechnology and sustainable energy production.

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