Recombinant Leptospira biflexa serovar Patoc Serine hydroxymethyltransferase (glyA)

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Description

Molecular and Functional Characteristics

Serine hydroxymethyltransferase (GlyA) is a pyridoxal phosphate-dependent enzyme essential for folate metabolism. In Leptospira biflexa, a non-pathogenic saprophyte, recombinant GlyA retains its catalytic activity and structural integrity when heterologously expressed. Key features include:

PropertySpecification
UniProt IDB0SMI6
Amino Acid Sequence416 residues (MSYLEKQDPEVYAALKK... [full sequence truncated for brevity])
Molecular Weight~46 kDa (calculated)
Purity>85% (SDS-PAGE verified)
Storage ConditionsTris-based buffer with 50% glycerol; stable at -20°C/-80°C

The enzyme’s surface-exposed regions and conserved active sites make it a target for functional studies in bacterial metabolism and host interactions.

Applications in Research

Recombinant GlyA is primarily utilized in:

  • Enzyme Kinetics Studies: Investigating substrate specificity and inhibition mechanisms.

  • Diagnostic Development: Serving as an antigen in ELISA and Western blot (WB) assays to detect leptospiral antibodies .

  • Structural Biology: Analyzing crystallographic or NMR-derived 3D structures to guide drug design.

Studies on heterologous expression systems in L. biflexa (e.g., Lig proteins ) demonstrate the organism’s utility as a surrogate host for pathogenic Leptospira gene products, though GlyA-specific functional data remain limited in published literature.

Technical Validation and Quality Control

Aviva Systems Biology’s recombinant GlyA is produced under stringent conditions:

ParameterDetail
Expression SystemEscherichia coli (exact strain unspecified)
Purification MethodAffinity chromatography
Endotoxin LevelsAvailable upon request (low-endotoxin option)
Immunoassay PerformanceValidated for WB and ELISA with high batch-to-batch consistency

Comparative Genomic Insights

L. biflexa’s genome encodes metabolic enzymes like GlyA as part of its core gene set . While pathogenic Leptospira species (e.g., L. interrogans) exhibit genome plasticity due to mobile genetic elements, L. biflexa’s genome stability ensures reliable recombinant protein yields . This stability is critical for producing consistent GlyA batches for research.

Future Research Directions

Current gaps include:

  • In Vivo Functional Studies: Evaluating GlyA’s role in L. biflexa survival under nutrient-limited conditions.

  • Host-Pathogen Interaction Mapping: Testing whether GlyA contributes to immune evasion or persistence mechanisms.

The established heterologous expression platform for L. biflexa could facilitate these studies by enabling targeted gene knockouts or overexpression assays.

Product Specs

Form
Lyophilized powder. We will preferentially ship the available format. If you have specific format requirements, please note them when ordering.
Lead Time
Delivery times vary based on purchasing method and location. Consult your local distributor for specifics. All proteins are shipped with blue ice packs by default. Request dry ice in advance for an extra fee.
Notes
Avoid repeated freeze-thaw cycles. Working aliquots are stable at 4°C for up to one week.
Reconstitution
Briefly centrifuge the vial before opening. Reconstitute in sterile deionized water to 0.1-1.0 mg/mL. Add 5-50% glycerol (final concentration) and aliquot for long-term storage at -20°C/-80°C. Our default glycerol concentration is 50%.
Shelf Life
Shelf life depends on storage conditions, buffer, temperature, and protein stability. Liquid form: 6 months at -20°C/-80°C. Lyophilized form: 12 months at -20°C/-80°C.
Storage Condition
Store at -20°C/-80°C upon receipt. Aliquot for multiple uses. Avoid repeated freeze-thaw cycles.
Tag Info
Tag type is determined during manufacturing. If you require a specific tag, please inform us, and we will prioritize its development.
Synonyms
glyA; LBF_0974Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1
Buffer Before Lyophilization
Tris/PBS-based buffer, 6% Trehalose.
Datasheet
Please contact us to get it.
Expression Region
1-416
Protein Length
full length protein
Purity
>85% (SDS-PAGE)
Species
Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)
Target Names
glyA
Target Protein Sequence
MSYLEKQDPE VYAALKKEDE RQEHSLEMIA SENFVSRPVL EAYHSTLTNK YAEGYPGKRY YNGCENADRV EELAIERAKK MFGAEYANVQ PHSGAQANMA VFLATLEPGD SFLGMNLAHG GHLTHGSAVN ISGKYFKPIP YGVDEKTETI NYDEVAKLAK EHKPKLIVVG ASAYPRVIDF NKFREIADGI GAKIMADIAH ISGLVVAGEH PSPIGVCDFV TTTTHKTLRG PRGGLILSSS EHEKILNSRV FPGIQGGPLM HVIAAKAVAF GEALQPDFKT YIKQVVKNAK TLAEVFQKRG FRVVSGGTDN HIVLLDVSVK GLTGKDAADG LDHIGVTVNK NAIPFDKNPP AVASGIRLGT PALTTRGLKE KEIEAVGNLI CDYLEHFGDT SFESKVKAAV KEITGAFPMN HFRLED
Uniprot No.

Target Background

Function
Catalyzes the reversible interconversion of serine and glycine using tetrahydrofolate (THF) as the one-carbon carrier. This reaction provides one-carbon groups for biosynthesis of purines, thymidylate, methionine, and other biomolecules. Also exhibits THF-independent aldolase activity with beta-hydroxyamino acids, producing glycine and aldehydes via a retro-aldol mechanism.
Database Links

KEGG: lbf:LBF_0974

Protein Families
SHMT family
Subcellular Location
Cytoplasm.

Q&A

What is Leptospira biflexa serovar Patoc and why is it valuable for recombinant protein studies?

Leptospira biflexa is a free-living, saprophytic species of the genus Leptospira (order Spirochaetales) that, unlike pathogenic Leptospira species, cannot cause disease in humans. The organism displays a helical structure and wave-shaped morphology, measuring approximately 20 µm long and 0.1 µm in diameter, with cytoplasm and outer membrane similar to Gram-negative bacteria .

L. biflexa serovar Patoc (particularly strain Patoc 1) serves as an ideal model organism for several reasons:

  • Ease of in vitro cultivation compared to pathogenic species

  • Uncomplicated genetic manipulation

  • Growth begins in just 2-3 days in standard media

  • Can be used as a surrogate host for expressing pathogenic Leptospira proteins

  • Serves as a prototype antigen for diagnostic reagent development

These characteristics make L. biflexa particularly valuable for the study of recombinant proteins, including serine hydroxymethyltransferase (glyA).

What expression systems are typically used for recombinant L. biflexa proteins?

Recombinant L. biflexa proteins, including glyA, can be expressed using several systems depending on research objectives and protein characteristics:

Expression SystemAdvantagesConsiderations
E. coliHigh yield, rapid growth, well-established protocolsMay have issues with protein folding or post-translational modifications
YeastBetter post-translational modifications, good for eukaryotic proteinsSlower growth than E. coli
BaculovirusExcellent for complex proteins, mammalian-like modificationsMore technically challenging, slower process
Mammalian CellMost authentic modifications for mammalian studiesLowest yield, most expensive, complex protocols

The source selection should be based on the specific research requirements, with E. coli often serving as the first-choice system for initial studies due to its simplicity and high yield .

What are the general cultivation conditions for L. biflexa serovar Patoc?

L. biflexa has been found worldwide (with the exception of Antarctica) and can be cultivated under the following conditions:

  • Medium: Ellinghausen-McCullough-Johnson-Harris (EMJH) medium

  • Temperature: Optimal growth at 30°C

  • Growth timeline: Saprophytic strains typically begin growth in 2-3 days

  • Morphology confirmation: Observation of characteristic helical structure

  • Storage: Cultures can be maintained with regular subculturing

These conditions provide a reliable environment for the growth of L. biflexa, making it significantly easier to work with than pathogenic Leptospira species which often require more complex media and have longer generation times .

How does the glyA gene function in bacterial systems?

While the search results don't provide specific information about glyA function in L. biflexa, general bacterial research shows that:

Serine hydroxymethyltransferase (glyA) catalyzes the reversible conversion of serine and tetrahydrofolate to glycine and 5,10-methylenetetrahydrofolate. This enzyme plays a crucial role in:

  • One-carbon metabolism

  • Amino acid biosynthesis

  • Nucleotide synthesis

  • Methylation reactions

The gene is regulated by specific transcription factors in different bacterial systems. For example, in Corynebacterium glutamicum, glyA is controlled by the transcriptional regulator GlyR , suggesting similar regulatory systems may exist in Leptospira species.

How can recombinant L. biflexa proteins be purified and characterized?

Recombinant L. biflexa proteins are typically purified and characterized using standard biochemical techniques:

  • Extraction: Cell lysis followed by clarification of lysate

  • Purification: Affinity chromatography (if tagged), ion exchange chromatography, or size exclusion chromatography

  • Verification: SDS-PAGE and Western blotting with specific antibodies

  • Functional characterization: Enzyme activity assays, binding studies, etc.

  • Structural analysis: Circular dichroism, X-ray crystallography or NMR if applicable

For proteins expressed with histidine tags, immobilized metal affinity chromatography (IMAC) is commonly employed, followed by further purification steps if needed for high purity applications .

What gene replacement techniques can be applied to study glyA function in L. biflexa?

Gene replacement in L. biflexa can be accomplished through homologous recombination using the following methodology:

  • Creation of a suicide vector containing the target gene (e.g., glyA) disrupted by an antibiotic resistance marker (e.g., kanamycin)

  • Pre-treatment of the vector DNA by UV irradiation or alkali denaturation

  • Introduction into L. biflexa via electroporation

  • Selection of transformants on media containing the appropriate antibiotic

  • Screening for single vs. double crossover events through PCR and phenotypic analysis

  • Confirmation of gene knockout by functional assays

This approach has been successfully demonstrated in L. biflexa with the flaB flagellin gene, resulting in non-motile mutants deficient in endoflagella. For more efficient selection of double recombinants, counterselectable markers such as sacB and rpsL genes can be employed . A similar strategy could be applied to study glyA function in L. biflexa.

How can heterologous expression systems be optimized for L. biflexa protein production?

Optimizing heterologous expression systems for L. biflexa proteins requires careful consideration of several factors:

  • Promoter selection: Strong promoters like the lipL32 promoter (P32) from pathogenic Leptospira have been successfully used for high-level expression in L. biflexa . Alternatively, inducible systems like the arabinose-inducible expression system (araC-PBAD) offer controlled expression .

  • Codon optimization: Adapting the coding sequence to the preferred codon usage of the expression host can significantly improve protein yield.

  • Culture conditions: For arabinose-inducible systems, induction parameters are critical:

    • Arabinose concentration: Higher concentrations (1% vs. 0.2%) showed improved expression

    • Induction timing: Optimal induction at mid-log phase

    • Temperature: Lower temperatures (25-30°C) may improve proper folding

    • Media composition: Rich vs. minimal media affects expression levels

  • Protein localization signals: For surface expression, appropriate signal sequences must be included.

  • Population homogeneity: Expression of transporters like AraE can ensure homogeneous induction across the cell population rather than bimodal distribution .

These parameters should be systematically optimized for each specific protein to achieve maximum yield and functionality.

What recombination events involving glyA have been observed in bacterial populations?

Recombination events involving glyA have been documented in bacterial populations, providing insights into evolutionary dynamics:

  • Intragenic recombination: Studies using RDP3 software have identified multiple intragenic recombination events in chromosomal genes including glyA, with some strains serving as recombinants between different bacterial populations .

  • Cross-species recombination: Some of the same recombination events were found in strains of both Rhizobium etli and R. gallicum, suggesting horizontal gene transfer between species .

  • Phylogenetic implications: Recombination events in glyA have been shown to explain "intermingled" strains in phylogenetic reconstructions, highlighting how recombination affects evolutionary relationships .

  • Detection methodologies: These events were detected using multiple complementary approaches:

    • RDP3 software implementing eight different recombination detection methods

    • Split decomposition analysis

    • Neighbor net analysis, which showed several splits related to detected recombination events

While these findings were reported in Rhizobium species, similar recombination processes likely occur in Leptospira populations, potentially affecting the evolution and function of glyA across different species and strains .

How can L. biflexa be used as a surrogate to express and study proteins from pathogenic Leptospira?

L. biflexa serves as an excellent surrogate host for studying proteins from pathogenic Leptospira through the following approach:

  • Genetic fusion construct design: The target gene from pathogenic Leptospira is fused with a strong promoter such as the lipL32 promoter (P32) .

  • Transformation into L. biflexa: The construct is introduced into L. biflexa serovar Patoc via established transformation protocols.

  • Expression verification: The expressed protein is detected by techniques such as Western blotting, comparing expression levels between recombinant L. biflexa and pathogenic Leptospira .

  • Functional gain assessment: Transformed L. biflexa can be evaluated for acquisition of new properties. For example:

    • Binding to host components (e.g., laminin, plasminogen)

    • Enzymatic activities

    • Surface localization

    • Immunological properties

This approach has been successfully demonstrated with the LIC11711 protein, where L. biflexa expressing this pathogen-specific protein acquired enhanced binding to laminin and plasminogen, suggesting the protein's role in bacterial adhesion and proteolytic activity . Similar strategies could be applied to study the function of glyA or other proteins from pathogenic Leptospira species.

What immunological responses are triggered by recombinant L. biflexa proteins?

Recombinant L. biflexa proteins and live L. biflexa cells can trigger significant immunological responses with potential protective effects:

  • Cellular immune responses: Exposure to L. biflexa before challenge with pathogenic L. interrogans increased:

    • B cell frequencies in the spleen

    • Effector T helper (CD4+) cell frequencies

    • Decreased cytotoxic T cell (CD8+) frequencies

  • Humoral immunity: Significant increases in serologic IgG2a antibodies were observed, indicating a Th1-biased immune response .

  • Protective effects: Pre-exposure to L. biflexa before challenge with pathogenic L. interrogans:

    • Rescued weight loss

    • Improved survival rates

    • Reduced kidney fibrosis

    • Prevented severe disease outcomes

  • Diagnostic applications: L. biflexa antigens (strain Patoc 1) are used as prototype antigens for developing diagnostic reagents that can detect IgM and IgG antibodies against Leptospira species .

  • Cross-reactivity: Antibodies against L. biflexa can cross-react with proteins from pathogenic species, suggesting shared epitopes that could be exploited for vaccine development .

These findings highlight the potential of L. biflexa proteins not only for diagnostic applications but also for developing protective immunization strategies against leptospirosis.

How might the enzymatic activity of recombinant glyA be assessed in experimental settings?

Assessment of recombinant serine hydroxymethyltransferase (glyA) enzymatic activity requires specialized assays that measure one or more aspects of its catalytic function:

  • Spectrophotometric assays:

    • Measurement of tetrahydrofolate-dependent conversion of serine to glycine

    • Monitoring 5,10-methylenetetrahydrofolate formation through coupled reactions

    • Assessment of reverse reaction (glycine to serine conversion)

  • Radioisotope-based methods:

    • Incorporation of 14C-labeled substrates

    • Measuring transfer of labeled one-carbon units

  • Coupled enzyme assays:

    • Linking glyA activity to NADH oxidation for spectrophotometric detection

    • Using secondary enzymes that utilize glyA reaction products

  • Comparative analysis:

    • Comparison of kinetic parameters (Km, Vmax) between glyA from L. biflexa and pathogenic species

    • Evaluation of cofactor requirements and substrate specificity

  • Inhibition studies:

    • Testing known inhibitors of serine hydroxymethyltransferase

    • Assessing effects of environmental conditions (pH, temperature, salt concentration)

The results of these assays would provide insights into the functional characteristics of glyA and its potential role in L. biflexa metabolism compared to pathogenic Leptospira species.

What are the applications of recombinant L. biflexa proteins in leptospirosis research and diagnostics?

Recombinant L. biflexa proteins have numerous applications in leptospirosis research and diagnostics:

  • Diagnostic tools:

    • L. biflexa antigens, especially from strain Patoc 1, serve as prototype antigens for ELISA development

    • These antigens can detect both IgM and IgG antibodies against various Leptospira species

    • The complement-fixation test using L. biflexa Patoc antigen provides a simple, sensitive genus-specific test

  • Vaccine development:

    • Recombinant proteins can be evaluated as potential vaccine candidates

    • Creative Biolabs offers recombinant Leptospira proteins specifically for vaccine development

  • Model systems:

    • L. biflexa expressing pathogen-specific proteins serves as a safe model to study virulence mechanisms

    • Gene replacement studies help understand gene function without the risks of working with pathogenic strains

  • Immune response studies:

    • Pre-exposure to L. biflexa triggers immune responses that mitigate disease severity upon challenge with pathogenic Leptospira

    • This approach helps understand protective immune mechanisms against leptospirosis

  • Functional genomics:

    • Heterologous expression in L. biflexa enables functional characterization of genes from pathogenic species

    • Surface-exposed proteins can be studied for their role in host-pathogen interactions

These applications highlight the versatility of L. biflexa as a research tool in leptospirosis studies, from basic science to translational applications in diagnostics and potential therapeutics.

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