Recombinant Ostreid herpesvirus 1 Uncharacterized protein ORF108 (ORF108)

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Description

General Information

Recombinant Ostreid herpesvirus 1 Uncharacterized protein ORF108 (ORF108) corresponds to a protein derived from the Ostreid herpesvirus 1 (OsHV-1) . OsHV-1 is a virus known to cause significant mortality in oysters, particularly in Pacific oyster larvae . ORF108 is a gene within the OsHV-1 genome, but its specific function remains uncharacterized . Research suggests that herpesvirus genes like ORF108 can play various roles in the virus's life cycle, including immune response modulation and mRNA processing .

Role in Viral Infection and Immunity

Studies indicate that OsHV-1 resistance involves complex genetic mechanisms, including antiviral responses mediated by genes like Toll-like receptors (TLRs) and RIG-I-like receptors (RLRs) . These receptors recognize pathogens and initiate immune responses . Variations in the promoter regions of these genes are associated with mortality rates, suggesting that transcriptional regulation could confer resistance .

One study identified 3,111 candidate genes associated with OsHV-1 resistance through allele-frequency shift and outlier analyses. These genes are involved in immune response regulation, B cell-mediated immunity, and myeloid cell activation .

Interaction with Host Cell Mechanisms

Some herpesviruses encode proteins that interact with host cell mechanisms to facilitate viral replication. For example, ORF10 of Kaposi's sarcoma-associated herpesvirus (KSHV) interacts with the Rae1-Nup98 complex to inhibit mRNA export, which promotes viral late gene expression . Although ORF108 is uncharacterized, it is conceivable that it may function similarly .

Expression and Functionality

The absence of permissive cell cultures has led to the use of oyster RNA-seq samples to study viral transcription . This approach has revealed that viral expression profiles in highly infected samples show active expression of most viral ORFs, suggesting the functional importance of many viral proteins during virus replication .

Implication in Disease

Ovine herpesvirus 2 (OvHV-2) encodes a protein, pOv8.25, which triggers apoptotic cell death by targeting mitochondria . This example highlights how specific viral proteins can contribute to disease phenotypes, suggesting potential research directions for understanding the role of ORF108 in OsHV-1 infections .

Tables of related genes and functions

GeneDescriptionFunction/Role
TLRsToll-like receptorsImportant in pathogen recognition and immune response; variations in promoter regions associated with mortality rates in OsHV-1 infections .
RLRsRIG-I-like receptorsNucleic acid sensors for pathogen recognition; essential for antiviral defense and type I interferon induction .
ORF10Kaposi's sarcoma-associated herpesvirus proteinInteracts with the Rae1-Nup98 complex to inhibit mRNA export, facilitating viral late gene expression .
Ov8.25Ovine herpesvirus 2 proteinTargets mitochondria, causing apoptosis and necrosis; contributes to the disease phenotype in malignant catarrhal fever .
ORF76Expressed in most samples with few viral reads from Ostreid herpesvirus 1(OsHV-1)Structural similarity to human nucleoporin, which postulates a role of this protein in the viral entry inside the cell nucleus. Possibly helping with replication .

Approaches to Study ORF108

  1. Transcriptomic Analysis: Analyzing RNA-seq data from OsHV-1-infected oysters to characterize ORF108 expression patterns during different stages of infection .

  2. Protein Interaction Studies: Conducting co-immunoprecipitation assays to identify host cell proteins that interact with ORF108, which may provide clues about its function .

  3. Functional Assays: Developing functional assays to assess the impact of ORF108 on viral replication, host cell survival, and immune response modulation .

  4. Reverse Genetics: Creating ORF108-knockout viruses to study the phenotypic effects of its absence on viral infection and pathogenesis .

  5. Genomic Analysis: Examining the genetic variations in ORF108 among different OsHV-1 strains to identify potential links between sequence variations and viral virulence .

Product Specs

Form
Lyophilized powder
Note: While we prioritize shipping the format currently in stock, please specify your format preference during ordering for customized preparation.
Lead Time
Delivery times vary depending on the purchasing method and location. Please contact your local distributor for precise delivery estimates.
Note: All proteins are shipped with standard blue ice packs unless dry ice shipping is requested. Please contact us in advance; additional fees apply.
Notes
Avoid repeated freeze-thaw cycles. Store working aliquots at 4°C for up to one week.
Reconstitution
Centrifuge the vial briefly before opening to collect the contents. Reconstitute the protein in sterile, deionized water to a concentration of 0.1-1.0 mg/mL. For long-term storage, we recommend adding 5-50% glycerol (final concentration) and aliquoting at -20°C/-80°C. Our default glycerol concentration is 50% and can serve as a guideline.
Shelf Life
Shelf life depends on several factors: storage conditions, buffer components, temperature, and protein stability. Generally, liquid formulations have a 6-month shelf life at -20°C/-80°C, while lyophilized formulations have a 12-month shelf life at -20°C/-80°C.
Storage Condition
Store at -20°C/-80°C upon receipt. Aliquoting is essential for multiple uses. Avoid repeated freeze-thaw cycles.
Tag Info
Tag type is determined during manufacturing.
The tag type is determined during production. If a specific tag type is required, please inform us, and we will prioritize its development.
Synonyms
ORF108; Uncharacterized protein ORF108
Buffer Before Lyophilization
Tris/PBS-based buffer, 6% Trehalose.
Datasheet
Please contact us to get it.
Expression Region
1-270
Protein Length
full length protein
Purity
>85% (SDS-PAGE)
Species
Ostreid herpesvirus 1 (isolate France) (OsHV-1) (Pacific oyster herpesvirus)
Target Names
ORF108
Target Protein Sequence
MHRVKAFKNL RLLITGKKEE KNKKPVEIPA RDIAANYCSR HEYDWGMFVK NENPFRGITY QSYNAFKLRR FIPDMNQEDH KEYLFLAEQA EQEALKQELK EQDLYTMIEE ISDDDVFTNP TMTDLAEKLG LEDESDDDDS GINFDVSTLA DEDTLYQREI LDREERRKEN NISNESVSEE PESPLFNDKG RIVNCSTCIY NNKLQKRGGY GVEEYAEHYV FPDDKDDNLV CLLSDADRVI REIENSNFDI EGFEQSIDYD MLIHDELFIS
Uniprot No.

Q&A

What is Ostreid herpesvirus 1 and what organisms does it infect?

Ostreid herpesvirus 1 (OsHV-1) is a member of the Malacoherpesviridae family that primarily infects bivalve mollusks, including the commercially important Pacific oyster (Crassostrea gigas) . The virus has become a significant concern in aquaculture due to its association with mass mortality events in oyster populations.

Methodologically, OsHV-1 infection is typically confirmed through:

  • PCR amplification of viral DNA from host tissues

  • Quantitative analysis of viral loads using qPCR

  • Experimental infection through cohabitation challenges

  • Field trials to assess infection dynamics in natural settings

What viral proteins are involved in the initial infection process of OsHV-1?

Research indicates that specific viral proteins play crucial roles in the initial interaction between OsHV-1 and host cells. Based on experimental evidence, the protein encoded by ORF 25 appears to be significantly involved in virus-host cell interactions. Additionally, proteins encoded by ORF 72 and ORF 41 are likely implicated in this process .

These findings were established through methodical approaches including:

  • In vitro trials using hemolymph from oysters with varying genetic backgrounds

  • Use of targeted antiviral antibodies against specific viral proteins

  • Experimental manipulation of virus-host interactions using compounds like dextran sulfate

  • Correlation of viral protein activity with infection outcomes

How does genetic background influence oyster susceptibility to OsHV-1?

Genetic factors significantly influence oyster susceptibility to OsHV-1 infection. Research has identified distinct differences in vulnerability between oyster families with different genetic backgrounds .

Methodologically, researchers assess genetic susceptibility through:

  • Production of oyster families from controlled breeding programs

  • Experimental challenges under standardized conditions

  • Comparative analysis of mortality rates between genetic lines

  • Quantification of viral DNA in different oyster families following exposure

  • Field validation of laboratory findings

For example, in comparative studies, specifically selected resistant families (e.g., families D and F) demonstrate significantly lower mortality rates compared to unselected families (e.g., families A, B, C, and E) when challenged with OsHV-1 .

What experimental approaches are most effective for studying OsHV-1 viral-host interactions?

Investigating OsHV-1 viral-host interactions requires sophisticated experimental approaches due to the complex nature of the infection process. Researchers employ multiple complementary methods:

  • Hemolymph-based in vitro systems:

    • Collection of hemolymph from oysters with different genetic backgrounds

    • Pooling hemolymph from genetically similar families to increase sample volume

    • Standardized viral exposure procedures to assess differential responses

  • Targeted inhibition studies:

    • Use of compounds like dextran sulfate (30 μg/mL) that interfere with virus-host interactions

    • Application of antiviral antibodies directed against specific viral proteins

    • Quantitative assessment of intervention effects on infection progression and mortality

  • Comparative genomics:

    • Analysis of viral gene expression during different infection stages

    • Identification of host factors that interact with viral proteins

    • Characterization of molecular mechanisms underlying resistance or susceptibility

These methodological approaches allow researchers to dissect the complex molecular interactions between OsHV-1 and its oyster hosts.

How can researchers identify and characterize viral proteins involved in OsHV-1 pathogenesis?

Characterization of viral proteins involved in OsHV-1 pathogenesis requires a multifaceted approach combining molecular, cellular, and functional techniques:

  • Molecular identification:

    • PCR amplification of viral open reading frames (ORFs)

    • Sequencing to confirm target proteins

    • Bioinformatic analysis to predict protein structure and function

  • Recombinant protein production:

    • Cloning viral genes into expression vectors

    • Expression in appropriate systems (bacterial, yeast, or insect cells)

    • Purification of recombinant proteins for functional studies

  • Functional characterization:

    • Development of antibodies against specific viral proteins

    • Binding assays to identify host cell receptors

    • Inhibition studies using targeted compounds or antibodies

  • In vivo validation:

    • Experimental infection models using recombinant proteins

    • Assessment of host responses to specific viral proteins

    • Correlation between protein activity and disease outcomes

Research has demonstrated that proteins encoded by ORF 25, ORF 72, and ORF 41 are likely involved in OsHV-1 interaction with host cells, opening avenues for targeted intervention strategies .

What mechanisms underlie antiviral resistance in OsHV-1 infection?

Understanding resistance mechanisms is crucial for developing disease management strategies. Research indicates multiple potential mechanisms:

  • Interference with viral attachment:

    • Compounds like dextran sulfate (30 μg/mL) significantly reduce mortality rates in experimental settings

    • These compounds likely interfere with the initial virus-host cell interactions

  • Host genetic factors:

    • Some oyster families demonstrate higher resistance to OsHV-1 infection

    • Resistant families (selected for their higher resistance to OsHV-1) show significantly lower mortality rates compared to unselected families

  • Molecular basis of resistance:

    • Differential expression of immune-related genes

    • Variations in cell surface receptors

    • Altered viral replication dynamics in resistant hosts

Methodologically, researchers investigate these mechanisms through comparative studies of resistant and susceptible oyster families under controlled experimental conditions, combining molecular, cellular, and whole-organism approaches.

How should researchers design experiments to evaluate potential antiviral compounds against OsHV-1?

Effective experimental design for antiviral evaluation requires rigorous methodology:

  • Compound selection and preparation:

    • Rational selection based on predicted mechanisms of action

    • Preparation at appropriate concentrations (e.g., dextran sulfate at 30 μg/mL)

    • Sterile filtration to prevent contamination

  • Experimental setup:

    • Inclusion of appropriate controls (untreated, vehicle-only)

    • Use of oysters from known genetic backgrounds

    • Standardized viral challenge conditions

    • Sufficient biological replicates to ensure statistical power

  • Outcome assessment:

    • Mortality tracking over appropriate timeframes

    • Quantification of viral loads using qPCR

    • Assessment of compound toxicity on host organisms

    • Statistical analysis of treatment efficacy

  • Validation across conditions:

    • Testing at different viral concentrations

    • Evaluation under various environmental parameters

    • Verification in different oyster genetic backgrounds

    • Scaling from laboratory to field application

This systematic approach allows for reliable identification of effective antiviral compounds and understanding of their mechanisms of action .

What considerations are important when designing OsHV-1 experimental infection models?

Robust experimental infection models are essential for reproducible OsHV-1 research:

  • Host selection:

    • Consideration of genetic background (resistant vs. susceptible families)

    • Age/size standardization (juveniles are typically more susceptible)

    • Health status verification prior to experiments

  • Infection methods:

    • Cohabitation challenges with infected donor oysters

    • Controlled exposure to viral inoculum

    • Field-based challenges in natural environments

  • Environmental parameters:

    • Temperature control (affects viral replication rates)

    • Water quality monitoring

    • Flow rate standardization in tank systems

  • Experimental design:

    • Appropriate sample sizes based on power calculations

    • Inclusion of uninfected controls

    • Randomization of experimental units

    • Blinding where possible during assessment

  • Data collection protocols:

    • Standardized sampling timepoints

    • Consistent tissue collection procedures

    • Validated molecular detection methods

    • Detailed record-keeping of all parameters

These methodological considerations ensure reproducibility and validity of experimental findings across different research settings.

How should researchers analyze mortality data from OsHV-1 challenge experiments?

Appropriate statistical analysis of mortality data is crucial for valid interpretation:

  • Survival analysis techniques:

    • Kaplan-Meier survival curves to visualize mortality patterns

    • Log-rank tests to compare survival between experimental groups

    • Cox proportional hazards models for multifactorial analysis

  • Temporal considerations:

    • Establishment of appropriate experimental duration

    • Analysis of mortality kinetics (rapid vs. progressive)

    • Identification of critical timepoints post-infection

  • Integration with viral load data:

    • Correlation between mortality and viral DNA concentrations

    • Threshold identification for predictive mortality

    • Time-course analysis of viral replication

  • Comparative analysis:

    • Between different genetic backgrounds

    • Between treatment groups (e.g., antiviral compounds)

    • Between laboratory and field conditions

What approaches can researchers use to resolve contradictory findings in OsHV-1 research?

When faced with contradictory research findings, methodological rigor is essential:

  • Systematic evaluation of experimental conditions:

    • Standardization of viral strains and quantification methods

    • Harmonization of challenge protocols

    • Consideration of environmental variables

  • Meta-analysis approaches:

    • Pooled analysis of data from multiple studies

    • Weighting of results based on methodological quality

    • Identification of moderator variables explaining contradictions

  • Collaborative validation:

    • Multi-laboratory testing under standardized conditions

    • Ring trials with identical protocols across research groups

    • Development of reference materials and standards

  • Integration of field and laboratory data:

    • Validation of laboratory findings in field settings

    • Consideration of ecological factors absent in laboratory conditions

    • Long-term monitoring to capture temporal variations

These approaches help resolve apparent contradictions and advance understanding of complex host-pathogen interactions in the OsHV-1 system.

What emerging technologies show promise for advancing OsHV-1 research?

Several cutting-edge technologies offer new avenues for OsHV-1 research:

  • Long-read sequencing technologies:

    • Improved viral genome characterization

    • Identification of structural variants

    • Transcriptomic analysis of infection dynamics

  • CRISPR-Cas9 gene editing:

    • Functional validation of host resistance genes

    • Engineering of resistant oyster lines

    • Targeted modification of viral genomes for attenuation studies

  • Single-cell approaches:

    • Cell-specific responses to viral infection

    • Identification of cellular tropism

    • Heterogeneity in host immune responses

  • Proteomics and structural biology:

    • Characterization of viral protein interactions

    • Structural analysis of key viral proteins

    • Identification of targets for antiviral development

  • Systems biology integration:

    • Multi-omics data integration

    • Network analysis of host-pathogen interactions

    • Predictive modeling of infection outcomes

These technological advances will enable more sophisticated understanding of OsHV-1 biology and pathogenesis, potentially leading to improved disease management strategies.

How can researchers translate OsHV-1 findings into practical applications for aquaculture?

Bridging research and application requires focused methodological approaches:

  • Development of rapid diagnostic tools:

    • Field-deployable detection methods

    • Quantitative assays for viral load assessment

    • Early warning systems for outbreak prediction

  • Breeding program integration:

    • Marker-assisted selection for resistance traits

    • Validation of resistance markers across environments

    • Balanced breeding approaches maintaining genetic diversity

  • Antiviral intervention strategies:

    • Scaling up of promising compounds like dextran sulfate

    • Development of application protocols for aquaculture settings

    • Cost-benefit analysis of intervention strategies

  • Management practice optimization:

    • Evidence-based recommendations for stock density

    • Temperature management protocols during high-risk periods

    • Biosecurity measures based on viral transmission dynamics

  • Stakeholder engagement and knowledge transfer:

    • Development of accessible guidance materials

    • Training programs for aquaculture professionals

    • Collaborative networks between researchers and industry

This translational approach ensures that scientific advances in OsHV-1 research provide practical benefits to the aquaculture industry, improving sustainability and production.

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