Recombinant Streptococcus pneumoniae Peptide chain release factor 1 (prfA)

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Description

Introduction

Recombinant Streptococcus pneumoniae Peptide Chain Release Factor 1 (PrfA) is a protein involved in translation termination in bacteria. While direct research on S. pneumoniae PrfA is limited in the provided sources, related studies on homologous proteins in other pathogens (e.g., Listeria monocytogenes and Mycobacterium bovis) and S. pneumoniae surface proteins provide insights into its potential structure, function, and vaccine applications. This article synthesizes available data, focusing on functional analogs and broader implications for bacterial pathogenesis.

Structure and Function

PrfA is a translation termination factor that recognizes the stop codons UAG and UAA during protein synthesis. Its structure includes a conserved N-terminal domain and a C-terminal DNA-binding motif, enabling it to regulate virulence gene expression in pathogens like Listeria monocytogenes.

Key Structural Features (based on Mycobacterium bovis PrfA, UniProtKB Q8DPZ4):

  • Sequence: 357 amino acids with a His-tag for purification.

  • Domains:

    • N-terminal β-barrel sheets flanked by α-helices.

    • C-terminal helix-turn-helix motif for DNA binding .

Role in Virulence and Pathogenesis

PrfA homologs in Listeria monocytogenes (e.g., PrfA*) regulate virulence gene expression, including listeriolysin O (LLO) and phospholipase C (PlcA) . Mutations like prfA(Gly145Ser) enhance DNA-binding affinity, increasing transcription of secreted factors critical for bacterial invasion .

Research Findings:

  • Activation Mechanism: PrfA requires a positively charged cofactor-binding pocket, with lysine residues (K64, K122, K130) facilitating activation .

  • Vaccine Potential: Recombinant PrfA proteins (e.g., rPhpA in S. pneumoniae) are explored as vaccine candidates due to their surface exposure and conserved epitopes .

Recombinant PrfA in S. pneumoniae

While S. pneumoniae PrfA-specific studies are absent, related proteins like PgdA (peptidoglycan deacetylase) share analogous roles in immune evasion and vaccine development .

Comparison of S. pneumoniae Surface Proteins:

ProteinFunctionVaccine PotentialReferences
PgdACell wall modification, immune evasionBroad protection
PspAAntimicrobial peptide bindingSerotype-independent
PrfATranslation termination, virulence regulationLimited data

Challenges and Future Directions

  • Limited Data: Direct studies on S. pneumoniae PrfA are lacking, necessitating extrapolation from homologs.

  • Vaccine Development: Surface proteins like PgdA and PspA highlight the need for conserved epitope identification in PrfA .

  • Antimicrobial Resistance: PrfA homologs in L. monocytogenes demonstrate adaptability via recombination, a potential concern for vaccine efficacy .

Product Specs

Form
Lyophilized powder. We will ship the format in stock. If you have special format requirements, please note them when ordering, and we will fulfill your request.
Lead Time
Delivery time varies depending on purchasing method and location. Consult your local distributor for specific delivery times. All proteins are shipped with normal blue ice packs by default. For dry ice shipping, contact us in advance; extra fees apply.
Notes
Avoid repeated freezing and thawing. Store working aliquots at 4°C for up to one week.
Reconstitution
Briefly centrifuge the vial before opening. Reconstitute protein in sterile deionized water to 0.1-1.0 mg/mL. Add 5-50% glycerol (final concentration) and aliquot for long-term storage at -20°C/-80°C. Our default final glycerol concentration is 50%.
Shelf Life
Shelf life depends on storage conditions, buffer ingredients, storage temperature, and protein stability. Liquid form shelf life is generally 6 months at -20°C/-80°C. Lyophilized form shelf life is generally 12 months at -20°C/-80°C.
Storage Condition
Store at -20°C/-80°C upon receipt. Aliquot for multiple uses. Avoid repeated freeze-thaw cycles.
Tag Info
Tag type is determined during manufacturing. If you require a specific tag, please inform us, and we will prioritize its development.
Synonyms
prfA; SPJ_0959; Peptide chain release factor 1; RF-1
Buffer Before Lyophilization
Tris/PBS-based buffer, 6% Trehalose.
Datasheet
Please contact us to get it.
Expression Region
1-359
Protein Length
full length protein
Purity
>85% (SDS-PAGE)
Species
Streptococcus pneumoniae (strain JJA)
Target Names
prfA
Target Protein Sequence
MNIYDQLQAV EDRYEELGEL LSDPDVVSDT KRFMELSKEE ASNRDTVIAY REYKQVLQNI VDAEEMIKES GGDADLEEMA KQELKDAKAE KEEYEEKLKI LLLPKDPNDD KNIILEIRGA AGGDEAALFA GDLLTMYQKY AEAQGWRFEV MEASMNGVGG FKEVVAMVSG QSVYSKLKYE SGAHRVQRVP VTESQGRVHT STATVLVMPE VEEVEYDIDP KDLRVDIYHA SGAGGQNVNK VATAVRIVHL PTNIKVEMQE ERTQQKNREK AMKIIRARVA DHFAQIAQDE QDAERKSTIG TGDRSERIRT YNFPQNRVTD HRIGLTLQKL DTILSGKLDE VVDALVLYDQ TQKLEELNK
Uniprot No.

Target Background

Function
Peptide chain release factor 1 terminates translation in response to the UAG and UAA stop codons.
Database Links

KEGG: sjj:SPJ_0959

Protein Families
Prokaryotic/mitochondrial release factor family
Subcellular Location
Cytoplasm.

Q&A

What is the significance of Pneumococcal Surface Protein A (PspA) in S. pneumoniae pathogenesis?

Pneumococcal Surface Protein A (PspA) is a cross-reactive protein expressed by all pneumococci that plays a crucial role in virulence by protecting the bacterium from host immune defenses. Research has shown that PspA can elicit antibodies in both animals and humans that provide protection against S. pneumoniae infection. According to phase I clinical trials, recombinant PspA is immunogenic in humans, and serum samples from subjects immunized with 125 μg of PspA contained more than 100 times the antibody concentration required to consistently protect mice from fatal infection (1.3 μg/dose). Methodologically, the protective capacity of anti-PspA antibodies can be evaluated through passive transfer studies in mouse models of infection, challenging with pneumococcal strains expressing different PspA families and capsular serotypes .

How does the classification of PspA families contribute to vaccine development strategies?

At least 98% of PspA proteins fall into two major sequence/serologic families: family 1 and family 2. This classification is significant for vaccine development because studies have demonstrated that antibodies elicited by a family 1 PspA can provide cross-protection against S. pneumoniae strains expressing either family 1 or 2 PspAs. Furthermore, these antibodies have shown protection against multiple capsular serotypes, including types 3, 6A, and 6B . When designing PspA-based vaccines, researchers should consider including representative antigens from both major families to ensure broad coverage against diverse pneumococcal strains. The effectiveness of such vaccines can be assessed through in vitro opsonophagocytic assays and in vivo protection studies in animal models challenged with pneumococcal strains expressing different PspA variants .

What techniques are most effective for constructing and validating serine protease mutants in S. pneumoniae?

For studying serine proteases in S. pneumoniae, the most effective approach involves in-frame insertion deletion mutagenesis. Based on recent research, this technique was successfully applied to create mutant D39 strains lacking specific serine proteases such as HtrA, SFP, and PrtA. The methodology involves first identifying putative serine proteases through genome analysis - for example, the S. pneumoniae D39 genome contains five putative serine proteases . Selection of targets for mutagenesis should be based on predicted cellular localization, with priority given to those predicted to be secreted and surface-exposed. After constructing the mutants, validation involves both molecular confirmation of the genetic modification and phenotypic characterization. For functional validation, pneumonia models using intranasal infection of mice with wild-type or mutant strains allow assessment of bacterial loads, dissemination patterns, and inflammatory responses in lung tissue. This approach enables researchers to systematically determine the contribution of individual serine proteases to pneumococcal virulence .

How can researchers effectively design experiments to assess the differential roles of pneumococcal serine proteases in virulence?

To effectively assess the differential roles of pneumococcal serine proteases in virulence, researchers should implement a multi-faceted experimental design. Based on published research, this approach should include both high-dose and low-dose infection models to capture different aspects of virulence. For example, studies with HtrA, SFP, and PrtA mutants revealed that after high-dose infection, only HtrA deletion significantly reduced bacterial loads, dissemination, and lung inflammation, while PrtA deletion reduced lung inflammation without affecting bacterial loads . Conversely, in low-dose infection models, both HtrA and SFP deletions resulted in reduced bacterial loads, with HtrA showing a stronger effect. These findings highlight the importance of using multiple infection doses to fully characterize virulence factor contributions. Additionally, researchers should collect a comprehensive set of outcome measures, including: (1) bacterial loads in lungs and blood to assess growth and dissemination; (2) histopathological analysis of lung tissue to evaluate inflammatory damage; (3) quantification of inflammatory markers; and (4) survival studies. This multi-parameter assessment allows for detection of subtle phenotypes that might be missed with more limited analyses .

What factors contribute to the unique epidemiological patterns of serotype 1 S. pneumoniae, and how can researchers best study these patterns?

Serotype 1 (S1) S. pneumoniae exhibits unusual epidemiological patterns characterized by short colonization periods (1-2 weeks compared to other serotypes) and a high propensity for causing invasive disease . These patterns are influenced by multiple factors: First, the unique zwitterionic structure of the S1 capsule provides enhanced resistance to opsonization and complement deposition, facilitating rapid translocation across the nasopharynx to reach olfactory tissues and brain compartments . Second, S1 strains demonstrate rapid release of pneumolysin, enhancing dissemination. Third, phylogenetic analysis reveals that S1 isolates belong to genetically related lineages sharing a common ancestor, with no evidence of S1 capsule expression in other distinct lineages, suggesting low recombination rates . To effectively study these patterns, researchers should employ an integrated approach combining: (1) molecular epidemiology using whole-genome sequencing to track S1 lineages; (2) experimental models examining capsule properties, including resistance to opsonization and mucosal penetration; (3) animal models specifically designed to capture the rapid progression from colonization to invasion; and (4) comparative genomics to understand lineage-specific virulence determinants .

What are the mechanisms by which HtrA (High-Temperature Requirement A) contributes to S. pneumoniae virulence, and how might these inform therapeutic strategies?

HtrA (High-Temperature Requirement A) is a serine protease that significantly contributes to S. pneumoniae virulence through multiple mechanisms. Experimental evidence using mutant D39 strains lacking HtrA (D39ΔhtrA) demonstrates its critical role in both high-dose and low-dose pneumonia models. After high-dose infection, D39ΔhtrA showed dramatically reduced virulence, characterized by strongly reduced bacterial loads, diminished dissemination to the bloodstream, and decreased lung inflammation . This phenotype was consistently observed in low-dose infection models as well. The mechanisms underlying HtrA's contribution to virulence likely include: (1) stress response management, as HtrA typically helps bacteria cope with temperature and oxidative stress encountered during infection; (2) processing of surface proteins involved in adhesion and immune evasion; (3) degradation of misfolded proteins that could otherwise impair bacterial fitness; and (4) potential direct interactions with host substrates. To leverage this knowledge for therapeutic development, researchers should focus on: developing specific inhibitors targeting HtrA's catalytic domain; investigating potential synergy between HtrA inhibitors and conventional antibiotics; exploring vaccination strategies using recombinant HtrA; and conducting studies to determine whether HtrA inhibition could reduce virulence without driving resistance development .

What novel experimental approaches and model systems would best advance our understanding of S. pneumoniae pathogenesis and accelerate vaccine development?

Advancing our understanding of S. pneumoniae pathogenesis and accelerating vaccine development requires innovative experimental approaches and model systems. Based on current research trends, the most promising directions include: First, leveraging multi-omics approaches (genomics, transcriptomics, proteomics, metabolomics) to comprehensively characterize pneumococcal isolates from small and large-scale projects such as the PAGe and GPS consortiums . These datasets provide unprecedented opportunities to understand complex epidemiology and biology of different pneumococcal serotypes and strains. Second, developing advanced in vitro and in vivo translational models that more closely mimic human physiology. For example, human lung organoids, nasopharyngeal epithelial cell culture systems, and humanized mouse models could better recapitulate host-pathogen interactions than conventional models . Third, employing genetic tools to systematically manipulate previously difficult-to-transform pneumococcal strains, such as serotype 1, enabling more detailed structure-function studies of virulence factors. Fourth, developing high-throughput screening platforms to evaluate vaccine candidate antigens against diverse pneumococcal strains simultaneously. Finally, implementing systems biology approaches to integrate host response data with pathogen characteristics, potentially identifying correlates of protection and predicting vaccine efficacy. These advanced methodologies, combined with traditional approaches, will provide a more comprehensive understanding of pneumococcal pathogenesis and accelerate the development of next-generation vaccines .

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