The REL gene encodes c-Rel, a transcription factor critical for regulating immune response genes. It forms part of the NF-κB signaling pathway, which is implicated in:
Oncogenesis: Overexpression linked to lymphoid malignancies .
Cellular Localization: Resides in the cytoplasm under basal conditions and translocates to the nucleus upon activation .
Subcellular Localization: Identified c-Rel in both nuclear and cytoplasmic compartments in human cancer cell lines using IF .
Protein-Protein Interactions: Demonstrated complex formation between c-Rel and NF-κB subunits (e.g., p50) via co-immunoprecipitation (IP) .
Disease Associations: Detected elevated c-Rel levels in autoimmune disorders and hematologic cancers via IHC and WB .
Cross-Reactivity: Predicted reactivity with mouse c-Rel (sequence homology >95%) .
Controls: Recommended positive controls include PMA-treated Jurkat cells .
Limitations: Not suitable for detecting phosphorylated c-Rel (use phospho-specific antibodies for Ser503 modifications) .
REL (Ab-503) Antibody is primarily utilized for detecting phosphorylated c-Rel at serine 503 in human cells via immunofluorescence (IF). Its specificity for the phosphoepitope (T-S-S(p)-D-S) makes it ideal for:
Mapping spatiotemporal activation of NF-κB signaling in response to cytokines (e.g., TNF-α, IL-1β) or cellular stress .
Investigating c-Rel nuclear translocation dynamics in immune cells (e.g., lymphocytes, macrophages) under inflammatory conditions .
Validating CRISPR/Cas9-mediated phosphorylation site mutations in REL gene-edited cell lines .
Specificity validation requires a multi-modal approach:
Peptide Blocking Assays: Pre-incubate the antibody with its immunogen peptide (T-S-S(p)-D-S). A >90% reduction in signal confirms epitope specificity .
Knockout Controls: Use REL−/− cell lines (e.g., CRISPR-edited HEK293) to confirm absence of non-specific binding .
Cross-Reactivity Screening: Test against recombinant proteins of other Rel/NF-κB family members (e.g., RelA, RelB) to rule out off-target interactions .
Phosphorylation at Ser503 is transient, peaking 15–30 minutes post-stimulation (e.g., LPS treatment) and declining by 2 hours . To capture this dynamic:
Fixation Timing: Terminate experiments at 15-minute intervals post-induction.
Inhibition Cocktails: Include phosphatase inhibitors (e.g., sodium orthovanadate) in lysis buffers to preserve phospho-signals .
Multiplex Imaging: Pair with antibodies against IκBα degradation to correlate c-Rel activation with upstream pathway events .
Contradictory signals often arise from:
Cell Cycle-Dependent Phosphorylation: c-Rel phosphorylation varies across phases; synchronize cells using double thymidine block .
Subpopulation Analysis: Combine IF with flow cytometry using lineage markers (e.g., CD4+ T cells vs. macrophages) .
Quantitative Thresholds: Establish fluorescence intensity cutoffs via histogram analysis of isotype controls .
Case Study: A 2024 trial reported false-positive nuclear staining in senescent fibroblasts, resolved by adding 0.1% Triton-X for improved cytoplasmic washout .
Proximity Ligation Assay (PLA): Visualize c-Rel interaction partners (e.g., p50) within 40 nm resolution .
CUT&Tag Sequencing: Map genome-wide c-Rel binding sites post-phosphorylation using Cleavage Under Targets and Tagmentation .
Phos-Tag™ Electrophoresis: Resolve phosphorylated vs. total c-Rel in stimulated vs. naive cells .
| Step | Technique | Key Readout |
|---|---|---|
| 1. Stimulation | TNF-α (10 ng/mL, 15 min) | IκBα degradation |
| 2. Localization | REL (Ab-503) IF | Nuclear translocation |
| 3. DNA Binding | ChIP-seq | Target gene occupancy |
Ser503 modification regulates c-Rel’s transcriptional activity in:
Autoimmunity: Elevated phosphorylation in rheumatoid arthritis synovium correlates with IL-17A overexpression .
Oncology: Constitutive phosphorylation in diffuse large B-cell lymphoma enhances anti-apoptotic BCL-2 expression .
Validation Strategy: Compare phospho-c-Rel levels in patient-derived xenografts vs. healthy controls using quantitative IF analysis .
While polyclonal antibodies inherently exhibit variability, REL (Ab-503) batches show <15% signal variance when:
Normalization: Pre-titer each lot against a reference sample (e.g., LPS-treated THP-1 cells) .
Cross-Validation: Confirm key findings with orthogonal methods (e.g., phospho-specific Western blot) .
Long-Term Storage: Aliquot in 50% glycerol, avoiding >3 freeze-thaw cycles to preserve affinity .
QuPath: Quantify nuclear vs. cytoplasmic staining intensity in whole-slide images .
CellProfiler: Classify phosphorylation states using machine learning pipelines trained on Ser503 mutants .
STRING-DB: Predict c-Rel interaction networks perturbed by Ser503 phosphorylation .
| Antibody | Vendor | Sensitivity (IF) | Cross-Reactivity |
|---|---|---|---|
| REL (Ab-503) | Abeomics | 1:200 | RelA (weak) |
| Phospho-c-Rel (S503) | Cell Signaling | 1:500 [N/A] | None reported |
| c-Rel pS503 | Sigma-Aldrich | 1:100 | RelB (moderate) |
Note: Independent validation using siRNA knockdown is recommended for all commercial antibodies .