RIDA Antibody

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Description

Introduction to RIDA Antibody

RIDA Antibody refers to immunoglobulins targeting the Reactive Imine/Enamine Intermediate Deaminase A (RIDA) protein, an enzyme critical for detoxifying reactive metabolic intermediates. These antibodies are employed in research to study RIDA’s role in cellular metabolism, mRNA degradation, and potential therapeutic applications.

Target Protein Overview

RIDA (Gene: RIDA) catalyzes the hydrolytic deamination of enamine/imine intermediates, such as 2-aminoacrylate (2AA), generated during pyridoxal-5'-phosphate-dependent enzymatic reactions . It also promotes endoribonucleolytic cleavage of m6A-modified mRNA via interactions with the ribonuclease P/MRP complex .

Antibody Types and Epitope Recognition

RIDA Antibodies are primarily rabbit polyclonal, designed to bind epitopes within the RIDA protein. Two commercial variants are notable:

SourceEpitopeApplicationsReactivity
Biofargo (P112969)Unspecified regionWB, IHCRabbit polyclonal
Abcam (ab224447)Recombinant fragment (aa50–C-terminus)IHC-P, WBHuman, Mouse, Rat

These antibodies enable detection of RIDA in diverse experimental models, including human tissues and rodent cell lines .

Immunohistochemistry (IHC)

RIDA Antibodies are used to localize the enzyme in tissue sections. For example:

  • Human Lung Cancer Tissue: IHC staining with Biofargo’s antibody (1:50–1:200 dilution) demonstrates cytoplasmic RIDA expression .

  • Controls: Positive controls include lung cancer samples, while neutralization experiments validate specificity .

Western Blot (WB)

WB applications involve detecting RIDA in lysates, with predicted band sizes ~14 kDa . Recommended dilutions:

ApplicationDilutionSource
WB1:500–1:2000Biofargo
IHC1:50–1:200Biofargo

Validation and Specificity

  • Cross-Species Reactivity: Abcam’s antibody reacts with human, mouse, and rat samples, enabling comparative studies .

  • Band Consistency: Biofargo’s antibody produces a single band at ~14 kDa in WB, confirming specificity .

Functional Insights

RIDA’s role in mRNA degradation is supported by studies showing its interaction with m6A-containing transcripts and the ribonuclease P/MRP complex . Antibody-based assays validate these interactions in cellular models.

Challenges and Considerations

  • Storage: Required at -20°C in PBS with 40% glycerol and 0.05% NaN₃ to maintain functionality .

  • Cross-Reactivity: Potential interference from non-specific binding necessitates blocking steps or control experiments.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
RIDA antibody; At3g20390 antibody; MQC12.15 antibody; Reactive Intermediate Deaminase A antibody; chloroplastic antibody; EC 3.5.99.10 antibody; 2-iminobutanoate/2-iminopropanoate deaminase antibody
Target Names
RIDA
Uniprot No.

Target Background

Function
This antibody targets RidA, an enzyme involved in isoleucine biosynthesis. RidA hydrolyzes the Ser-derived enamine/imine product of Thr dehydratase, protecting the plastidial branched-chain aminotransferase BCAT3 (AC Q9M401) from inactivation.
Gene References Into Functions
  1. This study elucidates the structural basis of RidA function in plants. PMID: 27458092
  2. Plastidial RidA proteins safeguard BCAT3 and isoleucine biosynthesis by hydrolyzing the Ser-derived enamine/imine product of Thr dehydratase. PMID: 25070638
Database Links

KEGG: ath:AT3G20390

STRING: 3702.AT3G20390.1

UniGene: At.71273

Protein Families
RutC family
Subcellular Location
Plastid, chloroplast.
Tissue Specificity
Expressed in leaves, petiols, petals, carpels and shoot apex.

Q&A

What is the principle behind the RIDA qLine Allergy test system and how does it compare to the standard ImmunoCAP method?

The RIDA qLine Allergy test system employs a multiparametric line immunoassay methodology where allergen extracts are immobilized on a nitrocellulose membrane alongside a standard curve. The detection process involves:

  • Patient serum application to the membrane

  • Binding of allergen-specific IgE antibodies to their respective allergens

  • Addition of biotin-conjugated anti-human IgE antibodies

  • Application of streptavidin-peroxidase conjugate that binds to the biotin

  • Catalyzation of tetramethylbenzidine (TMB) substrate by peroxidase, producing a colorimetric change

  • Scanning and quantification of color intensities against the standard curve

What is the clinical significance of the RIDASCREEN® Anti-ADM Antibodies test in therapeutic monitoring?

The RIDASCREEN® Anti-ADM Antibodies test provides critical information for therapeutic drug monitoring in patients receiving adalimumab (ADM) treatment for chronic inflammatory conditions such as inflammatory bowel disease (IBD), rheumatoid arthritis (RA), and spondyloarthritis.

This assay allows for quantitative determination of anti-adalimumab antibodies (ATA) in human serum and plasma, which is particularly valuable in cases of secondary loss of response to adalimumab therapy. The detection of ATA explains the immunological mechanism behind this loss of response:

  • ATA development neutralizes adalimumab activity through immunocomplex formation

  • These immunocomplexes are rapidly cleared from the system

  • This results in subtherapeutic adalimumab concentrations

The diagnostic value lies in stratifying patients with subtherapeutic adalimumab concentrations (<1 μg/ml) into those who would benefit from dose intensification versus those who require a drug class switch. Patients with low adalimumab concentrations but low ATA titers can benefit from dose intensification, as demonstrated in multiple clinical studies .

What is the sensitivity and specificity of the RIDA qLine Allergy test system for detecting allergen-specific IgE?

The RIDA qLine Allergy test system demonstrates variable performance characteristics depending on the specific allergen being tested:

  • Negative Percent Agreement (Specificity): Exceptionally high at 98.9% average across all allergens when compared with reference methods

  • Positive Percent Agreement (Sensitivity): Moderately high at 75.1% average for all individual allergens after testing with both reference methods

For food allergens specifically:

  • Highest agreement observed for sardine (κ = 1.000), casein (κ = 0.960), and cod (κ = 0.957)

  • Lowest agreement found for hazelnut (κ = 0.082), shrimp (κ = 0.366), and apple (κ = 0.442)

For most food allergens (excluding hazelnut), the positive percent agreement ranged from 27.1% to 100.0% compared to ImmunoCAP, improving to 35.0% to 100.0% when comparing with 3gAllergy results. The negative percent agreement ranged from 92.8% to 100.0% compared to ImmunoCAP, or from 94.0% to 100.0% when comparing with 3gAllergy results .

How does cross-reactivity with carbohydrate determinants (CCDs) affect RIDA qLine Allergy test results, and what methodological approaches can minimize this interference?

Cross-reactive carbohydrate determinants (CCDs) represent a significant challenge in allergy diagnostics as they can lead to false-positive results. The RIDA qLine Allergy system addresses this through the implementation of a CCD inhibitor.

In research testing, samples that initially showed positivity to CCDs were incubated with the RIDA CCD inhibitor and then retested:

  • All patient samples exhibited significant decreases in CAP class values

  • 90% of inhibitor-treated samples (18 out of 20) retested completely negative

  • The two samples that remained positive initially had the highest CAP class values (class 6), suggesting that inhibitor concentration may need adjustment for cases with extremely high initial sIgE levels to CCDs

The methodological approach for managing CCD interference includes:

  • Identify samples with potential CCD reactivity

  • Apply the RIDA CCD inhibitor (specific concentration based on expected CCD antibody levels)

  • Retest the sample

  • Interpret results with consideration of any residual positivity

This approach enhances the specificity of the test by reducing false positives that would otherwise result from CCD cross-reactivity. Previous research demonstrates that implementing CCD inhibition successfully enhances the sensitivity for detecting relevant IgE interactions. Even with the prospective use of recombinant allergens in immunoblot assays, CCD inhibitors remain relevant to further mitigate interference with cross-reactive carbohydrate determinants .

What is the correlation between RIDA qLine Allergy test results and clinical presentations, and how should researchers interpret discordant findings?

The correlation between RIDA qLine Allergy test results and clinical presentations shows interesting patterns that require nuanced interpretation:

For patients diagnosed with allergic rhinitis and/or allergic asthma in spring:

  • Median CAP class value for birch pollen was 2 using RIDA qLine Allergy

  • Significantly higher at 3 using ImmunoCAP

  • Patients with negative diagnosis showed median of 0 for both systems

For patients with allergic rhinitis and/or allergic asthma in summer:

  • Agreement at a median CAP class of 3 for timothy grass pollen in both test systems

  • Distinct reduction to median of 0 in patients without the diagnosis

For food allergens:

  • Results for walnut showed comparable median CAP class values at 0 for patients with oral allergy syndrome (OAS) and/or anaphylaxis to nuts

  • For cherry allergen, patients with OAS and/or anaphylaxis to fruits/vegetables showed median CAP class of 1 with ImmunoCAP, while RIDA qLine Allergy results were significantly lower with a median of 0

When interpreting discordant findings, researchers should consider:

  • Assay-specific detection limits: RIDA qLine Allergy may have different sensitivity thresholds compared to ImmunoCAP

  • Allergen extract composition differences: Variations in extraction methods and allergen composition can affect test results

  • Clinical relevance threshold: Lower sIgE levels indicate reduced risk for clinically relevant sensitization but are linked to increased inter-assay discrepancies

  • Potential CCD interference: Even with inhibitors, some cross-reactivity may persist

  • Need for comprehensive interpretation: Results should be interpreted within the clinical context to ensure applicability in allergy diagnostics .

What advantages does the RIDA qLine Allergy system offer for multiplexed allergen testing compared to single-allergen testing approaches?

The RIDA qLine Allergy system provides several methodological advantages for multiplexed allergen testing:

  • Cost-effectiveness: Multiple allergens tested simultaneously reduces per-allergen testing costs

  • Minimal sample requirements: Only small serum volumes needed for comprehensive allergen panels

  • Independence from advanced laboratory instruments: System operates with minimal specialized equipment

  • Simultaneous multi-parameter testing: Tests for food and aeroallergens can be performed concurrently

  • Semi-quantitative analysis: Provides both qualitative and semi-quantitative detection of specific IgE

The arithmetic mean of positive samples for food allergens with RIDA qLine Allergy was 20.03 versus 39.72 for ImmunoCAP (30.24 for 3gAllergy). For aeroallergens, the arithmetic mean of positive samples was higher: 54.61 for RIDA qLine Allergy, 71.50 for ImmunoCAP, and 63.89 for 3gAllergy .

These characteristics make the system particularly valuable as a first-line "bottom-up" diagnostic approach, especially in resource-limited settings where comprehensive allergen screening is needed but specialized equipment or extensive training may not be available.

What experimental considerations should researchers take into account when using RIDASCREEN® Anti-ADM Antibodies for immunogenicity studies?

When designing experiments with RIDASCREEN® Anti-ADM Antibodies for immunogenicity studies, researchers should consider:

  • Timing of sample collection:

    • Trough concentrations (immediately before next dose) provide the most meaningful assessment of ATA levels

    • Samples taken at other time points may be difficult to interpret due to the presence of the drug itself

  • Interpretation thresholds:

    • Subtherapeutic adalimumab concentrations (<1 μg/ml) should trigger ATA testing

    • ATA titers must be evaluated in conjunction with adalimumab levels

  • Drug interference:

    • Presence of adalimumab can interfere with ATA detection (drug interference)

    • Consider using drug-tolerant assay formats for patients with detectable drug levels

  • Clinical status correlation:

    • Always correlate findings with clinical response to therapy

    • Secondary non-responders are more likely to have developed ATA than primary non-responders

  • Validation parameters:

    • The assay has been validated in clinical trials

    • Works on automated ELISA readers (e.g., DSX®)

    • Uses highly specific antibodies to minimize cross-reactivity

How should conflicting results between RIDA qLine Allergy and skin prick tests be resolved in research contexts?

When researchers encounter conflicting results between RIDA qLine Allergy and skin prick tests, a systematic approach to resolution should be employed:

What is the impact of using recombinant allergens versus natural extracts on the performance of RIDA qLine Allergy tests?

The choice between recombinant allergens and natural extracts significantly impacts RIDA qLine Allergy test performance:

Recombinant allergens:

  • Provide highly standardized composition

  • Allow for detection of sensitization to specific molecular components

  • May miss conformational epitopes present in natural allergens

  • Reduce CCD-related cross-reactivity

  • Are particularly valuable for component-resolved diagnostics

Natural extracts:

  • Contain the full spectrum of allergenic components

  • Include possible conformational epitopes

  • May contain varying amounts of major and minor allergens

  • Are subject to batch-to-batch variability

  • May contain CCDs leading to cross-reactivity

When hazelnut (commonly augmented/spiked with molecular allergens in ImmunoCAP) was excluded from analysis, the positive percent agreement for food allergens ranged from 27.1% to 100.0%, demonstrating the impact of component resolution on test performance.

Researchers should consider that even with recombinant allergens, CCD inhibitors remain relevant to further mitigate interference with cross-reactive carbohydrate determinants. The study emphasizes that "standardized allergen extracts would improve independent comparisons of different allergy testing methods," highlighting the critical role of allergen preparation in test reliability .

What sample handling and preparation protocols are critical for ensuring reliable results with RIDA qLine Allergy and RIDASCREEN® Anti-ADM Antibodies tests?

Proper sample handling is crucial for obtaining reliable results with both test systems:

For RIDA qLine Allergy:

  • Sample collection:

    • Serum separation within 4 hours of collection

    • Avoidance of hemolyzed or lipemic samples that may interfere with colorimetric detection

  • Storage conditions:

    • Short-term: 2-8°C for up to 1 week

    • Long-term: -20°C or below, avoiding repeated freeze-thaw cycles

  • Pre-analytical processing:

    • Bring samples to room temperature before testing

    • Centrifuge samples if precipitates are visible

    • For CCD inhibition, proper incubation with the RIDA CCD inhibitor is essential

For RIDASCREEN® Anti-ADM Antibodies:

  • Timing of collection:

    • Samples should be collected at trough (immediately before next adalimumab dose)

    • Consistent timing across serial measurements for longitudinal monitoring

  • Interfering substances:

    • High rheumatoid factor may cause interference

    • Very high adalimumab concentrations can mask ATA detection

  • Sample types:

    • Both serum and plasma can be used

    • EDTA, citrate, or heparin are acceptable anticoagulants for plasma preparation

How should researchers establish appropriate cut-off values when implementing RIDA qLine Allergy testing in new research populations?

When implementing RIDA qLine Allergy testing in new research populations, researchers should follow a structured approach to establishing appropriate cut-off values:

What statistical approaches are most appropriate for analyzing concordance between RIDA qLine Allergy and reference methods in research studies?

When analyzing concordance between RIDA qLine Allergy and reference methods such as ImmunoCAP, researchers should consider these statistical approaches:

How can the RIDA qLine Allergy system be optimized for epidemiological studies of allergen sensitization patterns across different populations?

The RIDA qLine Allergy system offers unique advantages for epidemiological research on allergen sensitization patterns when optimized through these methodological approaches:

  • Custom panel development:

    • Design population-specific panels based on regional allergen prevalence

    • Include both common and region-specific allergens

    • Create age-specific panels (pediatric vs. adult)

  • Standardized protocols:

    • Implement consistent sample collection and processing methods

    • Standardize testing procedures across all study sites

    • Use identical lot numbers of reagents when possible

  • Reference population establishment:

    • Develop region-specific reference ranges

    • Determine appropriate cut-off values for different populations

    • Consider baseline sensitization rates in interpretation

  • CCD interference management:

    • Apply CCD inhibition systematically

    • The study showed successful reduction of CCD bands after inhibitor treatment

    • Document CCD positivity rates by region and correlate with environmental factors

  • Data analysis framework:

    • Apply multivariate analysis to identify sensitization patterns

    • Develop sensitization indices for population comparisons

    • Correlate sensitization patterns with clinical allergy prevalence

  • Cost-effectiveness advantage:

    • The multiplex nature allows for high-throughput screening

    • The system operates independently of advanced laboratory instruments

    • Requires minimal sample volumes (advantageous for pediatric studies)

What research designs are most appropriate for evaluating the clinical utility of RIDASCREEN® Anti-ADM Antibodies in predicting treatment outcomes?

To rigorously evaluate the clinical utility of RIDASCREEN® Anti-ADM Antibodies in predicting treatment outcomes, researchers should consider these study designs:

  • Prospective longitudinal cohort studies:

    • Enroll patients initiating adalimumab therapy

    • Perform baseline and regular follow-up measurements of ATA

    • Correlate ATA development with clinical outcomes

    • Advantage: Establishes temporal relationship between ATA development and response changes

  • Case-control nested within cohort:

    • Compare ATA levels between patients who maintain response and those who lose response

    • Match cases and controls for relevant variables (disease duration, concomitant medications)

    • Advantage: Efficient for identifying predictive biomarkers

  • Randomized controlled intervention trials:

    • Randomize patients with detected ATA to different management strategies:

      • Dose intensification

      • Switch to another TNF inhibitor

      • Switch to different drug class

    • Measure clinical outcomes across intervention groups

    • Advantage: Directly tests clinical utility of ATA-guided treatment decisions

  • Therapeutic drug monitoring (TDM) implementation studies:

    • Compare outcomes between patients managed with TDM vs. standard care

    • Include both adalimumab level and ATA measurements in the TDM arm

    • Advantage: Evaluates real-world implementation effectiveness

  • Biomarker validation studies:

    • Establish thresholds for clinically significant ATA levels

    • Determine positive and negative predictive values for treatment failure

    • Advantage: Provides actionable cut-off values for clinical decision-making

What are the key considerations when using RIDA qLine Allergy in research involving pediatric populations with suspected allergies?

When conducting research with RIDA qLine Allergy in pediatric populations, researchers must address several unique considerations:

  • Age-related interpretation:

    • sIgE levels and clinical relevance vary by age

    • Higher false-positive rates may occur in very young children

    • Establish age-specific reference ranges and cut-offs

  • Sample volume advantages:

    • The minimal sample requirements (noted as an advantage of the system) are particularly beneficial for pediatric patients

    • Multiple allergens can be tested from a single small-volume sample

  • Panel composition:

    • Customize allergen panels for age-appropriate exposures

    • Include food allergens more common in pediatric populations (milk, egg, peanut)

    • Consider developmental changes in allergen sensitization patterns

  • Clinical correlation challenges:

    • Limited ability to perform challenge tests in young children

    • Stronger reliance on history and observational data

    • May need to incorporate parent-reported symptoms into analysis

  • Longitudinal assessment value:

    • Track sensitization patterns over time

    • Identify early markers of persistent vs. transient allergies

    • Monitor for development of new sensitizations

  • CCD considerations:

    • Potential differences in CCD reactivity patterns between pediatric and adult populations

    • Apply CCD inhibition systematically as demonstrated in the research (successful reduction of CCD bands after inhibitor treatment)

  • Ethical considerations:

    • Minimize number of blood draws

    • Justify each allergen included in testing panels

    • Balance comprehensive assessment with patient burden

How might advances in recombinant allergen technology influence the next generation of RIDA qLine Allergy tests?

Advances in recombinant allergen technology are poised to significantly impact future RIDA qLine Allergy test development in several key areas:

  • Component-resolved diagnostics:

    • Integration of major and minor allergen components

    • More precise identification of primary sensitization vs. cross-reactivity

    • Improved discrimination between clinically relevant and irrelevant sensitizations

  • Epitope mapping capabilities:

    • Inclusion of specific epitope regions associated with different clinical phenotypes

    • Distinction between epitopes associated with transient vs. persistent allergies

    • Differentiation of epitopes linked to severe reactions vs. mild symptoms

  • Enhanced standardization:

    • More consistent test performance across batches and laboratories

    • Reduction in lot-to-lot variability

    • Improved inter-laboratory reproducibility

  • Reduced cross-reactivity:

    • Decreased CCD-related false positives

    • Less need for CCD inhibitors (though the study notes they remain relevant even with recombinant allergens)

    • More specific identification of true sensitization

  • Personalized panel development:

    • Custom panels based on molecular sensitization profiles

    • Region-specific allergen component panels

    • Disease-specific molecular panels (e.g., for food allergy vs. respiratory allergy)

As noted in the research: "Even with the prospective use of recombinant allergens in immunoblot assays, CCD inhibitors remain relevant to further mitigate interference with cross-reactive carbohydrate determinants." This suggests that while recombinant technology will improve specificity, complementary approaches to managing cross-reactivity will continue to be important .

What methodological adaptations could improve the detection of low-titer anti-adalimumab antibodies in RIDASCREEN® Anti-ADM Antibodies assays?

Several methodological adaptations could enhance the detection of low-titer anti-adalimumab antibodies in RIDASCREEN® Anti-ADM Antibodies assays:

  • Acid dissociation techniques:

    • Implementation of acid dissociation steps to separate ATA from drug

    • Allows detection of ATA even in the presence of circulating adalimumab

    • Increases sensitivity for low-titer antibodies in patients with residual drug

  • Extended incubation protocols:

    • Longer antigen-antibody interaction times

    • Optimization of temperature conditions

    • Enhancement of binding kinetics for low-affinity antibodies

  • Signal amplification systems:

    • Implementation of tyramide signal amplification

    • Enhanced chemiluminescent detection systems

    • Multi-layer detection approaches

  • Improved wash protocols:

    • Optimization of wash buffer composition

    • Refinement of wash cycles and volumes

    • Reduction of non-specific binding

  • Alternative detection antibodies:

    • Development of higher-affinity detection antibodies

    • Use of alternative isotype-specific detection systems

    • Implementation of multi-epitope detection approaches

  • Modified solid phases:

    • Alternative coating strategies for capture antibodies

    • Novel surface chemistry to reduce non-specific binding

    • Three-dimensional matrices to increase binding capacity

How might machine learning algorithms be applied to improve the interpretation of complex RIDA qLine Allergy profiles in polysensitized patients?

Machine learning approaches offer promising avenues for enhancing the interpretation of complex RIDA qLine Allergy profiles, particularly in polysensitized patients:

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