RPS6KA6 Antibody, Biotin conjugated

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Description

Introduction to RPS6KA6 and Its Significance

RPS6KA6 (Ribosomal Protein S6 Kinase, 90kDa, Polypeptide 6) is a serine/threonine kinase belonging to the p90 ribosomal S6 kinase (RSK) family. It exhibits constitutive kinase activity and plays roles in p53/TP53-dependent cell growth arrest and embryogenesis . Unlike other S6 kinases (e.g., S6K1/2), RPS6KA6 is not directly regulated by mTOR, making it a distinct target in signaling pathways .

RPS6KA6 Antibody, Biotin Conjugated: Key Features

Biotin-conjugated antibodies enable high-affinity detection via streptavidin-based systems (e.g., streptavidin-horseradish peroxidase or fluorescent streptavidin). This conjugation enhances sensitivity in applications like Western blotting (WB), immunohistochemistry (IHC), and ELISA.

Western Blotting (WB)

  • Detection: RPS6KA6 antibodies are used to monitor kinase activity or protein expression in lysates. For example, a rabbit polyclonal antibody (ABIN7168193) targeting AA 340-467 detects RPS6KA6 in human lysates .

  • Dilution: Typically 1:1000–1:5000 for WB .

Immunohistochemistry (IHC)

  • Paraffin-Embedded Tissues: Biotin-conjugated antibodies (e.g., bsm-62066r-biotin) enable visualization of RPS6KA6 in fixed tissues. Recommended dilutions: 1:200–400 for IHC-P .

  • Fluorescent IHC: Used to colocalize RPS6KA6 with ribosomal components. For example, streptavidin-fluorophore conjugates (e.g., NL999) highlight subcellular localization .

ELISA

  • Quantification: Biotinylated antibodies (e.g., Abbexa’s polyclonal) are employed in sandwich ELISA assays for precise measurement of RPS6KA6 levels .

Key Research Insights

  • Cancer Studies: RPS6KA6 is implicated in p53-dependent growth arrest and may regulate tumor suppressor pathways .

  • Phosphorylation Analysis: While RPS6KA6 does not directly phosphorylate ribosomal protein S6 (RPS6), its role in cross-talk with other kinases (e.g., ERK, PKA) is under investigation .

Epitope Diversity

AntibodyEpitopeAdvantagesLimitations
ABIN7168193 AA 340-467High specificity for human RPS6KA6Limited cross-reactivity (human-only)
bsm-62066r-biotin N-terminal regionBroad reactivity (human); suitable for IHC-FPotential off-target binding
Abbexa AA 340-467ELISA-optimized; high purity (>95%)Lower IHC applicability

Cross-Reactivity

  • Human vs. Other Species: Most biotin-conjugated antibodies (e.g., ) are human-specific, though some (e.g., ABIN1882127 ) cross-react with monkey.

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
We typically dispatch orders within 1-3 business days of receipt. Delivery times may vary depending on the method of purchase and your location. Please consult your local distributors for specific delivery times.
Synonyms
90 kDa ribosomal protein S6 kinase 6 antibody; KS6A6_HUMAN antibody; p90 RSK 6 antibody; p90-RSK 6 antibody; p90RSK6 antibody; pp90RSK4 antibody; Ribosomal protein S6 kinase 90kDa polypeptide 6 antibody; Ribosomal protein S6 kinase alpha 6 antibody; Ribosomal protein S6 kinase alpha-6 antibody; Ribosomal S6 kinase 4 antibody; rps6ka6 antibody; RSK 4 antibody; RSK-4 antibody; S6K-alpha-6 antibody
Target Names
Uniprot No.

Target Background

Function
RPS6KA6 encodes a constitutively active serine/threonine-protein kinase. This kinase exhibits growth-factor-independent activity and may participate in p53/TP53-dependent cell growth arrest signaling. It may also play an inhibitory role during embryogenesis.
Gene References Into Functions
  1. RSK4 is a potential tumor suppressor gene in non-small cell lung carcinoma. PMID: 30143490
  2. RSK4's regulatory role in breast cancer development is mediated by AKT and extracellular signal-regulated kinase (ERK) signaling pathways. Its expression is influenced by DNA methylation in promoter regions. PMID: 28731146
  3. RSK4 is expressed at low levels in malignant ovarian tumors, which is associated with advanced stages of the disease. PMID: 26732474
  4. Downregulation of RSK4 expression is linked to tumor cell proliferation and invasion. Silencing of RSK4 may contribute to the development and progression of breast cancer. PMID: 26397146
  5. Low RSK4 expression is correlated with advanced clinical pathologic classifications and is a poor prognostic indicator for overall survival in colorectal cancer patients. PMID: 25197367
  6. RSK4 mRNA is significantly decreased in most breast cancer tissues compared with paired non-cancerous tissues, due to promoter hypermethylation. Frequent epigenetic inactivation may play a role in precancerous lesions or early cancer. PMID: 24338215
  7. Studies have evaluated RSK4 expression in renal cell carcinoma (RCC) tissues and analyzed the relationship between RSK4 expression and clinicopathological features of RCC patients. These studies have also explored the potential molecular mechanisms of RSK4 in RCC cell lines. The expression pattern and molecular mechanisms of RSK4 in RCCs indicate it could be a potential independent prognostic factor. PMID: 23942078
  8. Overexpression of RSK3 or RSK4 supports tumor cell proliferation upon PI3K inhibition both in vitro and in vivo, contributing to drug resistance. PMID: 23635776
  9. Research suggests a significant role of PRKX, TTBK2, and RSK4 in triggering Sunitinib resistance formation. Data suggest transcriptional regulation of these kinases, along with other proteins, may play a crucial role in the development of Sunitinib resistance by affecting transcription factors. PMID: 22020623
  10. Findings suggest that RSK4 may serve as a mediator of endothelial progenitor cell senescence in diabetes mellitus. PMID: 22297070
  11. The expression level of RSK-4 mRNA in breast cancer was significantly lower than those in normal breast tissues and breast benign lesions tissues. The down-regulation of RSK-4 expression in breast cancer suggests that it is a breast cancer suppressor gene. PMID: 21875487
  12. Data indicate that RSK4 appears to be epigenetically silenced in endometrial cancer as evidenced by hypermethylation. PMID: 21372219
  13. RSK4's importance in regulating senescence highlights that downregulation of this kinase could be a significant factor in facilitating cell transformation. PMID: 21239520
  14. The unusual regulation and growth factor-independent activity of ribosomal S6 kinase 4 (RSK4) indicate that it is functionally distinct from other RSKs. This distinction may explain why RSK4 can participate in non-growth factor signaling. PMID: 15632195
  15. Downregulation of RPS6KA6 is associated with colon carcinoma. PMID: 16865262
  16. RT-PCR data show high expression of putative tumor suppressor genes Rsk4 and RbAp46 in 47% and 79% of breast carcinoma cases, respectively, whereas Cldn2 was down-regulated in 52% of breast cancer cases compared with normal adjacent tissues. PMID: 17314274
  17. RSK4 expression may limit the oncogenic, invasive, and metastatic potential of breast cancer cells. PMID: 18628456
  18. Results support the concept that RSK4 may be an important tumor suppressor gene by modulating senescence induction and contributing to cell proliferation control in colon carcinogenesis and renal cell carcinomas. PMID: 19584160

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Database Links

HGNC: 10435

OMIM: 300303

KEGG: hsa:27330

STRING: 9606.ENSP00000262752

UniGene: Hs.234478

Protein Families
Protein kinase superfamily, AGC Ser/Thr protein kinase family, S6 kinase subfamily
Subcellular Location
Cytoplasm, cytosol. Nucleus. Note=Predominantly cytosolic.

Q&A

What is RPS6KA6 and what biological functions does it serve in research contexts?

RPS6KA6 (Ribosomal Protein S6 Kinase, 90kDa, Polypeptide 6), also known as RSK4, p90RSK6, and pp90RSK4, is a constitutively active serine/threonine-protein kinase that exhibits growth-factor-independent kinase activity. This protein participates in p53/TP53-dependent cell growth arrest signaling pathways and appears to play an inhibitory role during embryogenesis . The gene is identified with Gene ID 27330 and Swiss-Prot accession number Q9UK32 . Understanding RPS6KA6 function is particularly important in research involving cell growth regulation, cancer biology, and developmental processes. When designing experiments targeting this protein, researchers should consider its role in signaling networks and potential interactions with tumor suppressor pathways.

What are the specific applications of biotin-conjugated RPS6KA6 antibodies compared to other detection formats?

Biotin-conjugated RPS6KA6 antibodies have demonstrated efficacy across multiple experimental techniques:

ApplicationDilution RangeKey Advantages of Biotin Conjugation
Western Blotting (WB)1:300-5000Enhanced signal amplification through avidin/streptavidin systems
Immunohistochemistry (Paraffin)1:200-400Improved sensitivity in fixed tissue samples
Immunohistochemistry (Frozen)1:100-500Better penetration in frozen tissue sections
ELISAApplication-dependentHigher detection sensitivity with lower background
ImmunofluorescenceApplication-dependentCompatible with multi-color labeling strategies

The biotin conjugation provides significant signal amplification advantages through secondary detection with streptavidin systems while maintaining high specificity for the RPS6KA6 target . This format is particularly valuable for detecting low-abundance targets or when working with challenging sample types that may contain inhibitory factors affecting antibody binding.

How do storage conditions affect the stability and performance of biotin-conjugated RPS6KA6 antibodies?

Optimal storage conditions are critical for maintaining antibody performance over time. For biotin-conjugated RPS6KA6 antibodies, the recommended storage temperature is -20°C, which preserves stability for approximately 12 months . The antibody is typically supplied in a protective buffer containing glycerol (50%), which prevents freeze-thaw damage, along with buffering agents and preservatives. In the case of catalog number bsm-62066r-biotin, the storage buffer contains 0.01M TBS (pH 7.4) with 1% BSA, 0.02% Proclin300, and 50% Glycerol . Similar formulations are found in other commercial preparations, such as ABIN7168193, which contains 0.03% Proclin 300, 50% Glycerol, and 0.01M PBS at pH 7.4 .

To maintain antibody performance, researchers should aliquot the antibody upon receipt to minimize freeze-thaw cycles, as repeated freezing and thawing can lead to protein denaturation and loss of binding activity. Each aliquot should be thawed only once and maintained at 4°C during experimental procedures, then returned to -20°C for long-term storage if unused portion remains.

What are the optimal sample preparation protocols when using biotin-conjugated RPS6KA6 antibodies for Western blotting?

When preparing samples for Western blotting with biotin-conjugated RPS6KA6 antibodies, researchers should follow these methodological steps for optimal results:

  • Lysate Preparation: Extract proteins using a buffer containing protease and phosphatase inhibitors, particularly important when studying kinases like RPS6KA6.

  • Sample Quantification: Standardize protein loading (20-50 μg total protein recommended) using BCA or Bradford assays.

  • Electrophoresis Conditions: Use 8-10% polyacrylamide gels as RPS6KA6 has a molecular weight of approximately 90 kDa.

  • Transfer Parameters: Optimize transfer conditions using PVDF membranes (preferred over nitrocellulose for phospho-proteins).

  • Blocking Strategy: Block with 5% BSA in TBST rather than milk, as milk contains phospho-proteins that may interfere with detection.

  • Antibody Dilution: Start with 1:1000 dilution for the biotin-conjugated RPS6KA6 antibody, then optimize based on signal intensity .

  • Detection System: Use streptavidin-HRP or streptavidin-fluorescent conjugates for detection, with signal development times optimized empirically.

Performing a titration experiment with different antibody concentrations (1:300, 1:1000, 1:3000) is recommended to determine the optimal dilution that provides specific signal with minimal background for your specific sample type .

How should researchers optimize immunohistochemistry protocols when using biotin-conjugated RPS6KA6 antibodies?

When performing immunohistochemistry with biotin-conjugated RPS6KA6 antibodies, the following protocol optimizations are recommended:

For Paraffin-Embedded Sections (IHC-P):

  • Antigen Retrieval: Heat-induced epitope retrieval using citrate buffer (pH 6.0) for 15-20 minutes is recommended, as this helps expose the epitopes masked by fixation.

  • Endogenous Biotin Blocking: Critical when using biotin-conjugated antibodies; block endogenous biotin using a commercial biotin blocking kit prior to antibody incubation.

  • Antibody Dilution: Begin with 1:200-400 dilution range as recommended for IHC-P applications .

  • Incubation Conditions: Optimal results are typically achieved with overnight incubation at 4°C in a humidified chamber.

  • Detection System: Use streptavidin-HRP followed by DAB or other chromogenic substrates, avoiding ABC kits which may produce higher background due to the biotin conjugation already present on the primary antibody.

For Frozen Sections (IHC-F):

  • Fixation: Brief post-sectioning fixation with 4% paraformaldehyde for 10 minutes.

  • Permeabilization: Include a permeabilization step with 0.1-0.3% Triton X-100 for improved antibody penetration.

  • Antibody Dilution: Use the more dilute 1:100-500 range as recommended for IHC-F applications .

A methodological validation using both positive and negative controls is essential, particularly human tissue samples known to express RPS6KA6, alongside appropriate technical controls to confirm the specificity of the staining pattern observed.

How can researchers validate the specificity of biotin-conjugated RPS6KA6 antibodies in their experimental systems?

Rigorous validation of antibody specificity is critical for generating reliable research data. For biotin-conjugated RPS6KA6 antibodies, implement the following validation strategies:

  • Epitope Analysis: Confirm that the antibody targets the specific region of RPS6KA6 needed for your study. Available antibodies target different epitopes, including:

    • AA 15-45 (N-terminal region)

    • AA 340-467 (middle region)

    • AA 636-745 (C-terminal region) (referenced in comparative listings)

    • C-terminal region (specific amino acids not defined)

  • Knockdown/Knockout Controls: Perform RPS6KA6 siRNA knockdown or CRISPR knockout experiments, comparing antibody staining patterns between wild-type and knockdown/knockout samples.

  • Overexpression Controls: Overexpress RPS6KA6 in a cell line with low endogenous expression and verify increased antibody signal.

  • Cross-Reactivity Assessment: Test the antibody against related RSK family members (RSK1, RSK2, RSK3) to ensure specificity for RSK4/RPS6KA6.

  • Peptide Competition: Pre-incubate the antibody with the immunizing peptide prior to staining to demonstrate signal abolishment.

  • Multiple Antibody Comparison: Compare results using antibodies that recognize different epitopes of RPS6KA6 to confirm consistent detection patterns.

  • Mass Spectrometry Validation: Perform immunoprecipitation followed by mass spectrometry to confirm capture of RPS6KA6 protein.

These validation approaches should be documented thoroughly in research publications to support the reliability of experimental findings.

What are the considerations for using biotin-conjugated RPS6KA6 antibodies in multiplex immunostaining experiments?

When designing multiplex immunostaining experiments incorporating biotin-conjugated RPS6KA6 antibodies, researchers should address several technical considerations:

  • Streptavidin Detection Strategy: Select a streptavidin conjugate (fluorophore, enzyme) with minimal spectral overlap with other detection systems being used.

  • Staining Sequence Optimization: For multi-color immunofluorescence:

    • Begin with the weakest signal (often the biotin-conjugated antibody)

    • Apply streptavidin detection before proceeding to subsequent antibodies

    • Include stringent washing steps between antibody applications

  • Blocking Endogenous Biotin: Critical in biotin-rich tissues (liver, kidney, brain); use commercial biotin blocking kits before antibody application.

  • Cross-reactivity Prevention: When using antibodies from the same host species (rabbit anti-RPS6KA6 biotin with other rabbit antibodies), employ sequential immunostaining with monovalent Fab fragment blocking between staining steps.

  • Antigen Denaturation Risk: Consider that some detection methods may denature antigens needed for subsequent staining; fluorescent streptavidin conjugates typically present lower risk than enzymatic methods.

  • Signal Amplification Balance: Biotin-streptavidin systems provide significant amplification, which may overwhelm other signals in multiplex experiments; optimize dilutions accordingly.

A pilot study comparing single staining versus multiplex protocols is recommended to identify potential interference issues before proceeding with full experimental design.

How does epitope specificity of different RPS6KA6 antibodies impact experimental outcomes in signaling pathway studies?

The choice of epitope specificity in RPS6KA6 antibodies significantly impacts experimental outcomes, particularly in studies of signaling pathway activation and protein interactions:

Epitope RegionAdvantagesLimitationsRecommended Applications
N-terminal (AA 15-45) Detects full-length protein; less affected by C-terminal post-translational modificationsMay detect inactive forms; potentially masked in protein complexesExpression studies; total protein quantification
Middle region (AA 340-467) Can detect both N- and C-terminal truncated variantsMay be affected by conformation changes during activationGeneral detection; comparative studies
C-terminalBetter for detecting activated forms; useful for phosphorylation studiesMay miss truncated variants; affected by C-terminal post-translational modificationsActivation state studies; functional analyses

The biotin-conjugated antibody targeting AA 340-467 (ABIN7168193) provides middle region specificity, potentially detecting RPS6KA6 regardless of activation state. This makes it suitable for general detection purposes, though researchers investigating specific phosphorylation events or protein interactions should carefully consider whether this epitope region may be masked or modified under their experimental conditions.

For studies focusing on RPS6KA6's role in p53/TP53-dependent cell growth arrest signaling, antibodies detecting the active conformation may provide more relevant information than those detecting total protein levels. Researchers should select the epitope specificity that aligns with their specific research question and validate the selected antibody's ability to detect the relevant protein state.

What are common sources of background when using biotin-conjugated RPS6KA6 antibodies and how can they be mitigated?

Background issues when using biotin-conjugated RPS6KA6 antibodies typically arise from several methodological factors, each requiring specific mitigation strategies:

  • Endogenous Biotin: Particularly problematic in biotin-rich tissues:

    • Solution: Implement dedicated biotin blocking steps using commercial kits before antibody application

    • Method: Sequential incubation with avidin followed by biotin effectively neutralizes endogenous biotin

  • Endogenous Peroxidase Activity: Relevant when using HRP-streptavidin detection:

    • Solution: Quench with 0.3% H₂O₂ in methanol for 15-30 minutes before antibody incubation

    • Method: For tissues with high peroxidase activity, consider alternative detection systems

  • Non-specific Binding: Common in various applications:

    • Solution: Optimize blocking conditions using 1-5% BSA or commercially available blocking reagents

    • Method: Include 0.1-0.3% Triton X-100 in blocking solutions for improved specificity

  • Excessive Antibody Concentration: Leading cause of background:

    • Solution: Perform systematic titration experiments starting from 1:300 and extending to 1:5000

    • Method: For Western blotting, begin at 1:1000; for IHC-P, start at 1:300

  • Insufficient Washing: Often overlooked source of background:

    • Solution: Implement more stringent washing protocols with increased duration and volume

    • Method: Use TBS-T (0.1% Tween-20) for multiple washes (4-5 times, 5 minutes each)

  • Cross-reactivity: Particularly when working with related RSK family proteins:

    • Solution: Validate antibody specificity against RSK family members

    • Method: Include appropriate negative controls (non-expressing tissues/cells)

Maintaining optimal storage conditions (-20°C) and avoiding repeated freeze-thaw cycles also helps preserve antibody specificity and reduce background issues in experiments using biotin-conjugated RPS6KA6 antibodies .

How can researchers troubleshoot inconsistent Western blot results when using biotin-conjugated RPS6KA6 antibodies?

When encountering inconsistent Western blot results with biotin-conjugated RPS6KA6 antibodies, systematic troubleshooting should address these common issues:

  • Variable Target Protein Levels:

    • Diagnostic: Run parallel blots for housekeeping proteins

    • Solution: Standardize cell culture conditions; harvest cells at consistent confluence

    • Method: Normalize loading using total protein stains rather than single housekeeping proteins

  • Sample Preparation Inconsistencies:

    • Diagnostic: Evaluate protein extraction efficiency with Ponceau S staining

    • Solution: Use standardized lysis buffer containing appropriate protease/phosphatase inhibitors

    • Method: Homogenize samples using consistent mechanical disruption techniques

  • Transfer Efficiency Problems:

    • Diagnostic: Use prestained markers to verify transfer

    • Solution: Optimize transfer conditions for high molecular weight proteins (~90 kDa)

    • Method: Consider semi-dry transfer systems for more consistent results

  • Streptavidin Detection System Variables:

    • Diagnostic: Test streptavidin reagent using biotinylated protein standards

    • Solution: Prepare fresh streptavidin-conjugate dilutions for each experiment

    • Method: Store streptavidin conjugates properly and check expiration dates

  • Antibody Stability Issues:

    • Diagnostic: Compare results using new and stored antibody aliquots

    • Solution: Store at -20°C in small single-use aliquots to prevent freeze-thaw damage

    • Method: Add carrier protein (BSA) to diluted antibody solutions

  • Blocking Inefficiencies:

    • Diagnostic: Compare different blocking agents (BSA vs. commercial blockers)

    • Solution: Use 5% BSA in TBS-T rather than milk for phospho-protein detection

    • Method: Extend blocking time to 2 hours at room temperature

When optimizing Western blot protocols, begin with the recommended dilution of 1:1000 for the biotin-conjugated RPS6KA6 antibody, then adjust within the range of 1:300-5000 based on signal intensity and background levels . Maintaining consistent secondary detection methods and development times is crucial for obtaining reproducible results.

How can biotin-conjugated RPS6KA6 antibodies be used to investigate p53/TP53-dependent cell growth arrest signaling?

RPS6KA6 has been identified as a participant in p53/TP53-dependent cell growth arrest signaling , making biotin-conjugated RPS6KA6 antibodies valuable tools for investigating these pathways. Methodological approaches for such investigations include:

  • Co-immunoprecipitation Studies:

    • Method: Use biotin-conjugated RPS6KA6 antibodies with streptavidin magnetic beads to pull down RPS6KA6 complexes

    • Analysis: Probe for p53/TP53 and other pathway components in precipitated material

    • Controls: Include IgG controls and validate with reverse immunoprecipitation

  • Dual Immunofluorescence Localization:

    • Method: Combine biotin-conjugated RPS6KA6 antibodies with p53/TP53 antibodies in cells under normal and stressed conditions

    • Analysis: Quantify co-localization coefficients using confocal microscopy

    • Controls: Include single-stained samples for spectral compensation

  • Cell Cycle Analysis:

    • Method: Correlate RPS6KA6 expression with cell cycle phases using flow cytometry

    • Analysis: Gate cells based on DNA content and measure RPS6KA6 levels

    • Controls: Compare RPS6KA6 wild-type and knockout/knockdown cells

  • Phosphorylation State Monitoring:

    • Method: Use phospho-specific antibodies alongside RPS6KA6 detection

    • Analysis: Monitor the phosphorylation state of both RPS6KA6 and its substrates following p53 activation

    • Controls: Include phosphatase-treated samples as negative controls

  • Transcriptional Regulation Studies:

    • Method: Combine RPS6KA6 immunostaining with RNA FISH for target genes

    • Analysis: Correlate RPS6KA6 protein levels with transcript abundance

    • Controls: Include transcription inhibitors to establish causality

For optimal experimental design, researchers should consider using the appropriate dilution ranges (1:300-5000 for WB; 1:200-400 for IHC-P) and validate antibody performance in their specific cellular systems before conducting comprehensive signaling studies.

What methodological considerations apply when using biotin-conjugated RPS6KA6 antibodies in developmental biology research?

Given RPS6KA6's inhibitory role during embryogenesis , biotin-conjugated RPS6KA6 antibodies offer valuable tools for developmental biology research, with these methodological considerations:

  • Tissue-Specific Expression Profiling:

    • Method: Use IHC-F (1:100-500 dilution) on developmental stage-specific frozen sections

    • Analysis: Quantify expression patterns across developmental timepoints

    • Special Considerations: Implement robust endogenous biotin blocking in embryonic tissues

  • Co-expression Analysis with Developmental Markers:

    • Method: Perform multiplex immunofluorescence combining RPS6KA6 with lineage-specific markers

    • Analysis: Determine cell populations expressing RPS6KA6 during development

    • Special Considerations: Optimize antibody penetration in thick embryonic tissues

  • Ex vivo Developmental Model Systems:

    • Method: Apply RPS6KA6 immunostaining in organoid cultures

    • Analysis: Correlate RPS6KA6 expression with morphological development

    • Special Considerations: Adjust fixation protocols for delicate 3D structures

  • Genetic Manipulation Validation:

    • Method: Use antibodies to confirm CRISPR/RNAi-mediated alterations in RPS6KA6 expression

    • Analysis: Quantify protein reduction in genetic models

    • Special Considerations: Include paralog-specific controls to confirm target specificity

  • Interaction with Developmental Signaling Pathways:

    • Method: Combine with markers of major developmental pathways (Wnt, Notch, BMP)

    • Analysis: Identify co-expression or mutual exclusivity patterns

    • Special Considerations: Account for potential epitope masking in protein complexes

When working with embryonic tissues, researchers should be particularly attentive to:

  • Optimization of fixation protocols to preserve both antigenicity and morphology

  • Implementation of stringent controls for endogenous biotin

  • Careful titration of antibody concentrations (starting with the higher end of recommended dilutions)

  • Validation of detection systems in the specific developmental model being used

The monoclonal nature of some biotin-conjugated RPS6KA6 antibodies (e.g., bsm-62066r-biotin) may provide advantages in terms of consistency across experimental batches when conducting longitudinal developmental studies.

How do monoclonal and polyclonal biotin-conjugated RPS6KA6 antibodies compare in research applications?

When selecting between monoclonal and polyclonal biotin-conjugated RPS6KA6 antibodies, researchers should consider these comparative performance characteristics:

CharacteristicMonoclonal (e.g., bsm-62066r-biotin) Polyclonal (e.g., ABIN7168193) Methodological Implications
Epitope RecognitionSingle epitopeMultiple epitopesMonoclonals provide higher specificity; polyclonals offer better detection of denatured proteins
Batch-to-Batch ConsistencyHighVariableMonoclonals preferred for longitudinal studies requiring consistent reagents
Signal StrengthModerateTypically higherPolyclonals may provide better sensitivity in low-expression systems
BackgroundGenerally lowerPotentially higherMonoclonals typically require less optimization to reduce background
Cross-ReactivityLess likelyMore likelyCritical consideration when studying related RSK family members
Production ScalabilityUnlimitedLimited by immunized animalImpacts long-term availability for extended research programs
Application VersatilityMay be technique-limitedMore versatile across techniquesConsider application requirements when selecting format

For applications requiring high specificity, such as distinguishing between closely related RSK family members, the monoclonal biotin-conjugated RPS6KA6 antibody (bsm-62066r-biotin) may be preferable despite potentially lower signal intensity . For applications where protein denaturation occurs (e.g., Western blotting) or where detection of multiple epitopes would improve sensitivity, the polyclonal biotin-conjugated RPS6KA6 antibody (ABIN7168193) might be more suitable .

The methodological decision should be guided by experimental requirements, with validation experiments comparing both formats in the specific research context when possible.

What are the methodological differences when working with biotin-conjugated versus unconjugated RPS6KA6 antibodies?

The choice between biotin-conjugated and unconjugated RPS6KA6 antibodies introduces several methodological differences that impact experimental design and execution:

  • Detection System Requirements:

    • Biotin-Conjugated: Requires streptavidin-reporter conjugates (HRP, fluorophore, etc.)

    • Unconjugated: Requires species-specific secondary antibodies

    • Methodological Impact: Biotin-conjugated systems often provide higher sensitivity but require additional optimization steps

  • Signal Amplification Potential:

    • Biotin-Conjugated: Multiple streptavidin molecules can bind each biotin, enabling significant signal amplification

    • Unconjugated: Amplification dependent on secondary antibody binding

    • Methodological Impact: Biotin-conjugated systems advantageous for detecting low-abundance targets

  • Multiplexing Capabilities:

    • Biotin-Conjugated: Limited by streptavidin detection system used

    • Unconjugated: Can be combined with other primary antibodies using species-specific secondaries

    • Methodological Impact: Unconjugated format offers greater flexibility in co-staining experiments

  • Endogenous Biotin Interference:

    • Biotin-Conjugated: Requires stringent endogenous biotin blocking

    • Unconjugated: Not affected by endogenous biotin

    • Methodological Impact: Biotin-conjugated requires additional protocol steps in biotin-rich tissues

  • Experimental Workflow Complexity:

    • Biotin-Conjugated: Fewer incubation steps (primary + streptavidin)

    • Unconjugated: Additional incubation step (primary + secondary + tertiary if using amplification)

    • Methodological Impact: Biotin-conjugated systems can shorten protocol duration

  • Cost Considerations:

    • Biotin-Conjugated: Higher initial antibody cost but fewer reagents needed

    • Unconjugated: Lower antibody cost but requires secondary reagents

    • Methodological Impact: Cost-benefit analysis depends on experiment scale

When selecting between formats, researchers should consider the specific requirements of their experimental system, particularly regarding sensitivity needs, multiplexing requirements, and the presence of endogenous biotin in their samples. For high-throughput applications, the streamlined workflow of biotin-conjugated antibodies may offer advantages, while for complex multi-protein detection schemes, unconjugated formats provide greater flexibility.

How can biotin-conjugated RPS6KA6 antibodies be integrated into single-cell analysis workflows?

The integration of biotin-conjugated RPS6KA6 antibodies into single-cell analysis workflows represents an emerging research application with specific methodological considerations:

  • Single-Cell Proteomics Applications:

    • Method: Use biotin-conjugated RPS6KA6 antibodies in microfluidic-based single-cell Western blotting

    • Analysis: Quantify RPS6KA6 protein levels in individual cells

    • Optimization: Begin with higher antibody concentrations (1:300) and titrate as needed

  • Mass Cytometry Integration:

    • Method: Combine biotin-conjugated RPS6KA6 antibodies with metal-tagged streptavidin for CyTOF analysis

    • Analysis: Include RPS6KA6 in multi-parameter single-cell profiling

    • Optimization: Validate signal-to-noise ratios in spike-in control samples

  • Spatial Transcriptomics Correlation:

    • Method: Overlay RPS6KA6 protein detection with RNA expression data

    • Analysis: Correlate protein and mRNA levels at single-cell resolution

    • Optimization: Develop compatible fixation protocols preserving both protein and RNA integrity

  • Live-Cell Imaging Applications:

    • Method: Use cell-permeable biotin-conjugated RPS6KA6 antibody fragments with fluorescent streptavidin

    • Analysis: Track RPS6KA6 dynamics in living cells

    • Optimization: Validate that antibody binding doesn't alter protein function

  • Single-Cell Functional Assays:

    • Method: Combine RPS6KA6 detection with functional readouts (e.g., calcium flux, phospho-flow)

    • Analysis: Correlate RPS6KA6 levels with cell-specific functional responses

    • Optimization: Develop compatible fixation and permeabilization protocols

Implementation challenges include optimizing sensitivity for low-abundance targets in single cells, minimizing background in limited sample volumes, and developing compatible protocols that preserve both target epitopes and single-cell integrity. Researchers should validate the biotin-conjugated RPS6KA6 antibody in bulk samples before attempting single-cell applications and consider the specific streptavidin detection system that will provide optimal results for their particular single-cell platform.

What methodological adaptations are required when using biotin-conjugated RPS6KA6 antibodies in high-throughput screening approaches?

Adapting biotin-conjugated RPS6KA6 antibodies for high-throughput screening (HTS) applications requires specific methodological modifications:

  • Automated Immunoassay Platform Integration:

    • Method: Optimize antibody dilution (start with 1:500) for robotics-compatible workflows

    • Analysis: Develop quantitative readout parameters for automated image analysis

    • Validation: Include positive and negative controls on each plate for normalization

  • Miniaturization Strategies:

    • Method: Adapt protocols for 384/1536-well formats with reduced volumes

    • Analysis: Validate signal-to-background ratios in miniaturized formats

    • Optimization: Adjust antibody concentration and incubation times for smaller reaction volumes

  • Signal Detection Standardization:

    • Method: Calibrate streptavidin detection systems for consistent sensitivity across plates

    • Analysis: Implement Z'-factor calculations to assess assay robustness

    • Validation: Develop standard curves using recombinant RPS6KA6 protein

  • Cross-Contamination Prevention:

    • Method: Implement stringent washing protocols compatible with automated systems

    • Analysis: Monitor plate position effects and edge artifacts

    • Optimization: Validate washing efficiency using fluorescent tracers

  • Data Analysis Workflow Development:

    • Method: Create automated image analysis pipelines for RPS6KA6 quantification

    • Analysis: Implement machine learning approaches for complex phenotype recognition

    • Validation: Compare automated results with manual scoring on subset of samples

  • Reagent Stability Considerations:

    • Method: Evaluate biotin-conjugated antibody stability under HTS conditions

    • Analysis: Monitor signal drift over screening campaign duration

    • Optimization: Prepare larger antibody batches to minimize variation

When transitioning to HTS formats, researchers should initially conduct pilot studies to determine the optimal working concentration of the biotin-conjugated RPS6KA6 antibody in their specific assay system, typically starting in the middle of the recommended range (1:300-5000 for WB applications; 1:200-400 for IHC applications) and adjusting based on signal-to-background optimization.

How might biotin-conjugated RPS6KA6 antibodies contribute to understanding the role of RPS6KA6 in cancer biology?

RPS6KA6 has emerging significance in cancer biology, and biotin-conjugated antibodies offer methodological advantages for investigating several research directions:

  • Tumor Suppressor Function Validation:

    • Research Question: Does RPS6KA6 function as a tumor suppressor through p53/TP53-dependent mechanisms?

    • Methodological Approach: Correlate RPS6KA6 expression with p53 status across tumor samples using IHC-P (1:200-400 dilution)

    • Technical Advantage: Biotin-streptavidin amplification improves detection in fixed clinical specimens

  • Biomarker Development Potential:

    • Research Question: Can RPS6KA6 expression levels serve as prognostic/predictive biomarkers?

    • Methodological Approach: Develop quantitative immunohistochemistry protocols using biotin-conjugated antibodies

    • Technical Advantage: Enhanced sensitivity for detecting subtle expression differences

  • Therapeutic Response Monitoring:

    • Research Question: Does RPS6KA6 expression/activity change in response to targeted therapies?

    • Methodological Approach: Implement before/after treatment analysis in tissue samples

    • Technical Advantage: Consistent detection across multiple timepoints using standardized protocols

  • Cell Signaling Pathway Integration:

    • Research Question: How does RPS6KA6 interact with other cancer-relevant signaling pathways?

    • Methodological Approach: Combine with phospho-specific antibodies in multiplex analyses

    • Technical Advantage: Biotin-conjugated format facilitates signal amplification for phospho-epitopes

  • Drug Development Applications:

    • Research Question: Can compounds targeting RPS6KA6 modulate cancer cell behavior?

    • Methodological Approach: Develop activity-based assays using the antibody as a readout

    • Technical Advantage: High-throughput compatibility for screening compound libraries

Future research would benefit from developing tissue microarray-compatible protocols using biotin-conjugated RPS6KA6 antibodies to facilitate large-scale patient cohort studies, potentially revealing correlations between RPS6KA6 expression patterns and clinical outcomes across multiple cancer types.

What are the promising applications of biotin-conjugated RPS6KA6 antibodies in neurodevelopmental research?

Given RPS6KA6's role in embryogenesis and signaling pathways , biotin-conjugated antibodies offer unique methodological advantages for neurodevelopmental research:

  • X-Linked Intellectual Disability Investigations:

    • Research Context: RPS6KA6 gene resides on X chromosome with implications for sex-linked developmental disorders

    • Methodological Approach: Compare RPS6KA6 expression in normal and pathological neurodevelopment using IHC-F (1:100-500)

    • Technical Advantage: Signal amplification through biotin-streptavidin improves detection in limited biopsy material

  • Neural Progenitor Differentiation Studies:

    • Research Context: Potential role in fate determination of neural stem cells

    • Methodological Approach: Track RPS6KA6 expression during in vitro differentiation of neural progenitors

    • Technical Advantage: Compatible with multi-color flow cytometry for quantitative cell population analysis

  • Axon Guidance and Synaptogenesis Research:

    • Research Context: Kinase signaling pathways regulate axonal growth and synapse formation

    • Methodological Approach: Visualize RPS6KA6 localization in developing neuronal cultures

    • Technical Advantage: Enhanced sensitivity for detecting subcellular localization in neuronal compartments

  • Brain Region-Specific Expression Mapping:

    • Research Context: Differential expression across brain structures during development

    • Methodological Approach: Develop whole-brain immunohistochemistry protocols

    • Technical Advantage: Biotin-conjugated format provides consistent detection across different neural tissues

  • Neurodevelopmental Disorder Models:

    • Research Context: RPS6KA6 dysfunction may contribute to neurodevelopmental pathologies

    • Methodological Approach: Compare expression patterns in control and genetic model systems

    • Technical Advantage: Standardized detection protocols facilitate cross-laboratory validation

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