PHF7 Antibody, FITC conjugated

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Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, orders can be shipped within 1-3 business days of receipt. Delivery times may vary based on the purchasing method and location. Please contact your local distributors for specific delivery information.
Synonyms
DKFZp434L1850 antibody; HSPC045 antibody; HSPC226 antibody; MGC26088 antibody; NYD SP6 antibody; OTTHUMP00000212988 antibody; OTTHUMP00000212989 antibody; OTTHUMP00000212990 antibody; OTTHUMP00000212993 antibody; PHD finger protein 7 antibody; Phf7 antibody; PHF7_HUMAN antibody; Testis development protein NYD SP6 antibody; Testis development protein NYD-SP6 antibody
Target Names
PHF7
Uniprot No.

Target Background

Function
PHF7 Antibody, FITC conjugated, may play a role in spermatogenesis.
Gene References Into Functions
  1. The PHF7 promoter binds to H4K12ac in mature spermatozoa. PMID: 22894908
Database Links

HGNC: 18458

KEGG: hsa:51533

STRING: 9606.ENSP00000333024

UniGene: Hs.372719

Subcellular Location
Nucleus.
Tissue Specificity
Highly expressed in Sertoli cells, but not in germ cells in adult testis. Expression in embryonic testis is 30-times lower. Highly expressed in colon, spleen, white blood cells, pancreas, lung, liver, placenta and brain. Detected at lower levels in thymus

Q&A

What is PHF7 and why is it relevant for developmental biology research?

PHF7 is a PHD finger protein that preferentially binds to H3K4me2 and plays a critical role in maintaining germ cell sexual identity. In Drosophila, PHF7 is normally expressed in male germ cells but is silenced in female germ cells through H3K9 methylation . When ectopically expressed in female germ cells, PHF7 disrupts oogenesis, leading to either agametic phenotypes or germ cell tumors . This makes PHF7 particularly relevant for developmental biology research focused on sex determination, germ cell identity, and mechanisms preventing inappropriate lineage programming. Studies of PHF7 provide insights into how chromatin modifications secure cell fate decisions and how disruption of these mechanisms can lead to pathological outcomes such as tumor formation. The discovery that PHF7 can initiate a positive autoregulatory feedback loop when ectopically expressed has further implications for understanding transcriptional regulation mechanisms in development .

What are the main applications of PHF7 antibody, FITC conjugated in germ cell research?

PHF7 antibody, FITC conjugated has several key applications in germ cell research:

  • Visualization of sex-specific expression patterns in Drosophila germ cells, allowing researchers to distinguish between male and female germline identity based on PHF7 expression .

  • Investigation of mutations in regulatory genes controlling PHF7 expression, such as those involved in H3K9 methylation pathways. For example, studies have shown that loss of the gene identity crisis (idc), which encodes a zinc finger protein, disrupts PHF7 repression in female germ cells by reducing H3K9me3 deposition .

  • Analysis of tumorigenic properties associated with ectopic PHF7 expression, enabling researchers to correlate PHF7 protein levels with phenotypic outcomes and transcriptional changes .

  • Examination of the relationship between PHF7 and chromatin modifications, particularly its interaction with H3K4me2, which is important for understanding how PHF7 functions as a chromatin reader in germ cells .

  • Study of autoregulatory feedback mechanisms, as research has revealed that ectopic PHF7 can overcome its own transcriptional repression through promoter switching .

What is the optimal protocol for immunofluorescence using PHF7 antibody, FITC conjugated?

For optimal immunofluorescence using PHF7 antibody, FITC conjugated, especially in Drosophila tissue samples, researchers should follow this detailed protocol:

  • Sample Preparation:

    • Dissect Drosophila ovaries or testes in cold PBS

    • Fix tissues in 4% paraformaldehyde for 20 minutes at room temperature, or alternatively in methanol for 10 minutes at -20°C

    • Wash 3× in PBS containing 0.1% Triton X-100 (PBST)

  • Permeabilization and Blocking:

    • Permeabilize tissues with PBST for 30 minutes at room temperature

    • Block with PBS containing 10% fetal bovine serum (FBS) for at least 20 minutes at room temperature to reduce non-specific binding

  • Antibody Incubation:

    • Dilute PHF7 antibody, FITC conjugated in PBS/10% FBS at a recommended dilution of 1:500

    • Incubate tissues with diluted antibody for 1 hour at room temperature or overnight at 4°C in the dark

    • Wash 2-3× with PBS for 5 minutes each

  • Counterstaining and Mounting:

    • Counterstain nuclei with DAPI (1 μg/ml) for 5 minutes

    • Mount tissues in anti-fade mounting medium on glass slides

    • Seal with nail polish and store at 4°C in the dark

  • Imaging:

    • Observe using a fluorescence microscope equipped with appropriate filters for FITC (excitation ~495 nm, emission ~520 nm)

    • Avoid prolonged exposure to excitation light to prevent photobleaching

When studying PHF7 expression patterns, pay special attention to developmental stages, as expression changes during development. Additionally, when examining germ cell tumors caused by ectopic PHF7, analyze multiple tissue regions as tumor formation may be focal .

How should PHF7 antibody, FITC conjugated be stored and handled to maintain optimal activity?

PHF7 antibody, FITC conjugated requires specific storage and handling conditions to maintain optimal activity:

  • Storage Conditions:

    • Store at -20°C in the dark

    • Aliquot into small volumes to avoid repeated freeze-thaw cycles

    • The antibody is typically supplied in Phosphate-Buffered Saline (PBS) with 0.01% sodium azide as a preservative

  • Light Protection:

    • Protect from continuous exposure to light, as this can cause gradual loss of fluorescence

    • Work in reduced lighting conditions when handling the antibody

    • During experimental procedures, keep the antibody on ice and protected from light

  • Handling Precautions:

    • Avoid repeated freeze-thaw cycles, which can degrade antibody quality

    • During experimental procedures, minimize exposure time at room temperature

    • Note that sodium azide (commonly used as a preservative) is toxic and can form explosive metal azides, so appropriate precautions should be taken during disposal

  • Working Solution Preparation:

    • Prepare fresh working dilutions shortly before use

    • Dilute in blocking buffer containing PBS with 10% FBS or another appropriate diluent

    • For immunofluorescence applications, a 1:500 dilution is typically recommended

Following these guidelines will help ensure that the PHF7 antibody, FITC conjugated maintains its specificity and fluorescence intensity, leading to more consistent and reliable experimental results.

What controls should be included when using PHF7 antibody, FITC conjugated?

When conducting experiments with PHF7 antibody, FITC conjugated, the following controls are essential for ensuring reliable and interpretable results:

  • Positive Controls:

    • Wild-type male Drosophila germ cells, where PHF7 is naturally expressed

    • Transgenic samples with confirmed PHF7 expression, such as those using the UASp-containing EP transposable element insertion (P{EPgy2}phf7) driven by nos-GAL4

  • Negative Controls:

    • Wild-type female Drosophila germ cells, where PHF7 is normally silenced through H3K9 methylation

    • PHF7 knockout or knockdown samples to confirm antibody specificity

    • Secondary antibody-only control (omitting primary antibody) to assess background fluorescence

  • Specificity Controls:

    • Pre-absorption control where the antibody is pre-incubated with excess purified PHF7 protein before staining

    • Comparison with alternative PHF7 antibodies (non-FITC conjugated) to confirm staining patterns

    • Samples from idc GLKD (identity crisis germline knockdown) mutants, which should show ectopic PHF7 expression in female germ cells

  • Technical Controls:

    • Unstained sample to assess autofluorescence

    • Isotype control using an irrelevant FITC-conjugated antibody of the same isotype

    • RNAi knockdown of an unrelated gene (e.g., white) as a negative control for RNAi effects

  • Validation Controls:

    • Parallel RNA expression analysis using RT-qPCR with primers specific for the testis-specific phf7-RC transcript

    • Comparison with BAC transgenic lines encoding HA-tagged PHF7, which serve as faithful reporters of sex-specific PHF7 expression patterns

Including these comprehensive controls helps researchers distinguish between true PHF7 signal and artifacts, validate antibody specificity, and correctly interpret expression patterns in different genetic contexts.

How can PHF7 antibody, FITC conjugated be used to distinguish male and female germ cell identity?

PHF7 antibody, FITC conjugated provides an excellent tool for distinguishing male and female germ cell identity in Drosophila due to the strict sex-specific expression pattern of PHF7 protein. In wild-type Drosophila, PHF7 is expressed specifically in male germ cells but is silenced in female germ cells through H3K9 methylation-mediated repression . To effectively use PHF7 antibody for sex determination:

  • Immunostaining Protocol:

    • Process male and female gonads in parallel using the standard immunofluorescence protocol

    • Use a 1:500 dilution of PHF7 antibody, FITC conjugated in PBS containing 10% FBS

    • Include DAPI counterstaining to visualize all nuclei regardless of PHF7 expression

  • Expected Results:

    • Male germ cells: Distinct FITC signal indicating PHF7 protein expression

    • Female germ cells: Absence of FITC signal, confirming PHF7 silencing

    • In cases of sex identity disruption (e.g., idc knockdown in females), unexpected PHF7 expression will be visible in female germ cells

  • Quantitative Assessment:

    • Measure fluorescence intensity across multiple cells in each sample

    • Establish threshold values based on positive (male) and negative (female) controls

    • Classify cells as male or female based on PHF7 expression levels

  • Validation Approaches:

    • Use RT-qPCR with primers specific for the testis-specific phf7-RC transcript to confirm immunostaining results

    • Combine with additional sex-specific markers for more robust identification

    • In experimental conditions where sex identity might be ambiguous, use HA-tagged PHF7 BAC transgenes as additional reporters

This approach is particularly valuable for studying genetic mutations or conditions that affect sexual identity, such as the idc gene knockdown, which results in inappropriate PHF7 expression in female germ cells .

What are common causes of high background when using PHF7 antibody, FITC conjugated?

High background with FITC-conjugated antibodies, including PHF7 antibody, can arise from several sources:

  • Insufficient Blocking:

    • Problem: Inadequate blocking allows non-specific binding of antibodies to the sample

    • Solution: Optimize the blocking solution (typically PBS containing 10% fetal bovine serum) and extend the blocking time to at least 20 minutes at room temperature

    • Alternative approach: Test different blocking agents such as BSA or normal serum from the same species as the secondary antibody

  • Over-conjugation of FITC:

    • Problem: Excessive FITC molecules on the antibody can increase non-specific binding

    • Solution: Use antibodies with optimal F/P ratios (typically obtained through gradient DEAE Sephadex chromatography)

    • Impact: The optimal molecular fluorescein/protein (F/P) ratio is crucial for maintaining antibody activity while providing sufficient fluorescence

  • Sample Autofluorescence:

    • Problem: Natural fluorescence from the tissue in the same spectrum as FITC

    • Solution: Include unstained controls to assess autofluorescence levels

    • Alternative approach: Use spectral unmixing during image acquisition or post-processing to separate autofluorescence from specific signal

  • Inadequate Washing:

    • Problem: Residual unbound antibody contributes to background

    • Solution: Implement more thorough washing steps (at least 2 × 5 minutes with PBS)

    • Alternative approach: Use PBS with 0.1% Triton X-100 for more effective washing

  • Suboptimal Fixation:

    • Problem: Over-fixation can increase autofluorescence and non-specific binding

    • Solution: Optimize fixation conditions (time, temperature, fixative concentration)

    • Consideration: Different fixatives (paraformaldehyde vs. methanol) may affect background levels differently

Addressing these issues through methodical optimization can significantly improve signal-to-noise ratio when using PHF7 antibody, FITC conjugated, leading to clearer visualization of specific PHF7 expression patterns.

How can researchers validate the specificity of PHF7 antibody, FITC conjugated staining patterns?

Validating the specificity of PHF7 antibody, FITC conjugated staining patterns requires multiple complementary approaches:

  • Genetic Validation:

    • Compare staining patterns between wild-type samples and phf7 loss-of-function mutants, which should show significantly reduced or absent signal

    • Use inducible expression systems like the UASp-containing EP transposable element (P{EPgy2}phf7) to create positive controls with controlled PHF7 expression

    • Examine idc knockdown female germ cells, which should show ectopic PHF7 expression compared to normal female germ cells

  • Molecular Validation:

    • Perform parallel RT-qPCR analysis using primers specific for different phf7 transcript isoforms, particularly the testis-specific phf7-RC transcript

    • Compare immunofluorescence results with Western blot analysis using the same antibody

    • Use alternative methods of detecting PHF7, such as RNA fluorescence in situ hybridization (FISH), to confirm protein localization correlates with mRNA expression

  • Technical Validation:

    • Perform antibody pre-absorption tests by incubating the FITC-conjugated PHF7 antibody with purified PHF7 protein prior to staining

    • Compare staining patterns using different lots of the same antibody and alternative PHF7 antibodies

    • Examine cross-reactivity with related proteins by comparing staining patterns in tissues known to express PHF7 family members

  • Reporter System Validation:

    • Use transgenic flies carrying HA-tagged PHF7 constructs, which have been shown to faithfully report PHF7's sex-specific expression pattern

    • Perform co-immunostaining with FITC-conjugated PHF7 antibody and anti-HA antibodies to confirm signal overlap

  • Functional Correlation:

    • Correlate PHF7 staining patterns with expected biological outcomes, such as the presence of germ cell tumors in female flies with ectopic PHF7 expression

    • Assess whether PHF7 staining patterns align with known chromatin states, particularly H3K9 methylation patterns which are involved in PHF7 repression

By implementing these validation strategies, researchers can confidently interpret PHF7 antibody staining patterns and distinguish specific signals from potential artifacts.

What factors might affect the intensity of PHF7 antibody, FITC conjugated signal?

Multiple factors can influence the intensity of PHF7 antibody, FITC conjugated signal in experimental settings:

  • Technical Factors:

    • Fluorophore-to-Protein Ratio: The optimal molecular fluorescein/protein (F/P) ratio balances antibody activity and fluorescence intensity. Over-conjugation can reduce antibody binding affinity while under-conjugation may result in weak signals

    • Photobleaching: FITC is particularly susceptible to photobleaching. Prolonged exposure to excitation light during sample handling or image acquisition can significantly reduce signal intensity

    • pH Sensitivity: FITC fluorescence is pH-dependent, with optimal emission at pH 8-9 and substantially reduced intensity at lower pH

  • Sample Preparation Variables:

    • Fixation Method: Different fixation protocols can affect epitope accessibility and preservation

    • Permeabilization Efficiency: Insufficient permeabilization may prevent antibody access to nuclear PHF7, while excessive permeabilization might lead to sample degradation

    • Blocking Effectiveness: Inadequate blocking can increase background, reducing signal-to-noise ratio and apparent specific signal intensity

  • Biological Variables:

    • PHF7 Expression Levels: Natural variation in PHF7 expression across developmental stages and in response to genetic perturbations

    • Autoregulatory Feedback: PHF7's positive autoregulatory feedback mechanism can result in varying expression levels depending on initial PHF7 concentration

    • Chromatin State: Since PHF7 is regulated by H3K9 methylation , conditions affecting chromatin modifications may influence PHF7 levels

    • Protein Localization: Changes in PHF7 subcellular localization can affect apparent signal intensity in different cellular compartments

  • Imaging and Quantification Considerations:

    • Microscope Settings: Variation in exposure times, gain settings, and detector sensitivity

    • Image Processing: Different deconvolution algorithms or background subtraction methods

    • Quantification Methodology: Threshold settings, region of interest selection, and normalization strategies

To minimize variability, researchers should standardize experimental conditions, include appropriate controls, and consider using internal standards for signal normalization across experimental batches.

How should researchers approach quantification of PHF7 expression?

Quantifying PHF7 expression using FITC-conjugated antibodies requires a systematic approach that accounts for the unique properties of both PHF7 and FITC:

  • Image Acquisition Standardization:

    • Use consistent microscope settings (exposure time, gain, laser power) across all samples

    • Acquire images below saturation to ensure linearity of signal

    • Include calibration samples with known PHF7 expression levels in each imaging session

    • Minimize photobleaching by reducing exposure to excitation light

  • Preprocessing and Background Correction:

    • Subtract autofluorescence using unstained control samples

    • Apply flat-field correction to account for uneven illumination

    • Use rolling ball background subtraction to remove local background variation

    • For tissue sections, normalize to tissue thickness using DAPI signal intensity

  • Cell/Nucleus Identification:

    • Use DAPI counterstaining to identify individual nuclei

    • Implement automated segmentation algorithms to delineate individual cells or nuclei

    • For Drosophila germ cells, use germline-specific markers to distinguish germ cells from somatic cells

  • Signal Quantification Strategies:

    • Measure mean fluorescence intensity within defined cellular compartments (nucleus vs. cytoplasm)

    • Calculate integrated density (product of area and mean intensity) for total PHF7 protein content

    • For heterogeneous samples (e.g., tumors), quantify percentage of PHF7-positive cells and their intensity distribution

    • When studying autoregulation, correlate PHF7 intensity with phenotypic outcomes or expression of PHF7-regulated genes

  • Normalization Approaches:

    • Normalize to internal reference proteins with stable expression

    • When using transgenic reporters, compare HA-PHF7 signal with FITC-conjugated antibody signal

    • Express results relative to control samples (e.g., male germ cells for positive control, female germ cells for negative control)

  • Statistical Analysis:

    • Apply appropriate statistical tests based on data distribution

    • Account for biological replicates and technical replicates separately

    • Consider hierarchical analysis for nested data (e.g., multiple cells within multiple tissue samples)

    • Correlate quantitative PHF7 expression with functional readouts such as transcriptional changes or phenotypic outcomes

This structured approach enables generation of reliable quantitative data that can be meaningfully compared across experimental conditions.

How can PHF7 antibody, FITC conjugated be used to investigate autoregulatory mechanisms?

Research has revealed that PHF7 participates in a positive autoregulatory feedback mechanism where ectopic PHF7 can overcome its own transcriptional repression through promoter switching . To investigate this phenomenon using PHF7 antibody, FITC conjugated:

  • Experimental Design with Dual Tagging Systems:

    • Utilize transgenic systems with differentially tagged PHF7 alleles, such as an HA-tagged PHF7 locus embedded in a BAC rescue construct

    • Employ the GAL4-UAS system to drive ectopic PHF7 expression from the endogenous locus via a UASp-containing EP transposable element insertion (P{EPgy2}phf7)

    • Use immunofluorescence with PHF7 antibody, FITC conjugated to detect endogenous PHF7 protein, while using anti-HA antibodies to detect the tagged transgenic PHF7

  • Promoter Analysis Studies:

    • Create reporter constructs containing different phf7 promoter regions driving fluorescent markers

    • Combine with ectopic PHF7 expression to observe autoregulatory effects on promoter activity

    • Use PHF7 antibody, FITC conjugated to confirm PHF7 protein levels correlate with observed promoter switching

  • Quantitative Assessment of Feedback Mechanisms:

    • Implement dose-response experiments with varying levels of ectopic PHF7 expression

    • Use immunofluorescence to quantify both the ectopic and endogenous PHF7 protein levels

    • Correlate PHF7 protein levels with transcript levels measured by RT-qPCR for different phf7 isoforms

  • Phenotypic Correlation:

    • Analyze the relationship between PHF7 expression levels and tumorigenic capacity

    • Research has shown that tumorigenic capacity is dependent on the dosage of phf7

    • Use PHF7 antibody, FITC conjugated to quantify PHF7 levels in tumor samples of varying severity

  • Mutation Analysis:

    • Investigate the requirement of PHF7's PHD fingers for autoregulation

    • Studies indicate that transcriptional autoregulation and oncogenic properties of PHF7 require the PHD fingers

    • Compare immunofluorescence patterns between wild-type and PHD finger mutant versions of PHF7

This approach allows researchers to dissect the mechanisms underlying PHF7's ability to overcome its own repression and establish a positive feedback loop that contributes to tumorigenesis when inappropriately activated in female germ cells.

What experimental approaches can be used to study PHF7 and H3K9 methylation relationships?

The relationship between PHF7 and H3K9 methylation represents a critical aspect of germ cell sexual identity maintenance, as H3K9 methylation plays an essential role in securing female germ cell fate by silencing lineage-inappropriate phf7 transcription . Several experimental approaches using FITC-conjugated PHF7 antibodies can help elucidate this relationship:

  • Co-Immunofluorescence Studies:

    • Perform dual immunofluorescence with FITC-conjugated PHF7 antibody and antibodies against H3K9me3 using spectrally distinct fluorophores

    • Analyze colocalization patterns at the phf7 gene locus using high-resolution microscopy

    • Quantify the inverse correlation between H3K9me3 and PHF7 expression across different cell types and genetic backgrounds

  • Chromatin Modifier Perturbation:

    • Knock down or overexpress H3K9 methyltransferases and demethylases

    • Use FITC-conjugated PHF7 antibodies to assess changes in PHF7 expression

    • Compare results with RT-qPCR analysis of phf7-RC transcript levels

    • Correlate changes in H3K9me3 levels with PHF7 expression patterns

  • Analysis of idc Function:

    • Study the ZAD-ZNF protein Identity Crisis (IDC), which is required for phf7 sex-specific transcriptional control

    • Use CRISPR-Cas9 to generate precise mutations in IDC's zinc finger domains

    • Assess the impact on H3K9me3 deposition and PHF7 expression using FITC-conjugated antibodies

    • Perform chromatin immunoprecipitation (ChIP) to measure IDC binding to the conserved region within the phf7 gene

  • Promoter-Specific Regulation:

    • Generate reporter constructs with wild-type and mutated versions of phf7 cis-regulatory elements

    • Analyze how these elements influence H3K9me3 deposition and PHF7 expression

    • Use FITC-conjugated PHF7 antibodies to visualize expression patterns of different promoter variants

  • Developmental Time Course:

    • Track the dynamics of H3K9me3 deposition and PHF7 expression during germ cell development

    • Use FITC-conjugated PHF7 antibodies to precisely time the onset of PHF7 expression in relation to changes in H3K9 methylation

    • Create time-lapse imaging systems using ex vivo culture of Drosophila gonads to observe real-time changes

These approaches provide insights into how H3K9 methylation mechanistically controls PHF7 expression and how disruption of this regulation affects germ cell sexual identity and tumor formation.

How can PHF7 antibody, FITC conjugated be used to investigate germ cell tumors?

Investigating germ cell tumors caused by ectopic PHF7 expression requires a multimarker approach to characterize tumor development, composition, and molecular properties. PHF7 antibody, FITC conjugated can be effectively used through these strategies:

  • Tumor Initiation and Progression Analysis:

    • Combine FITC-conjugated PHF7 antibody with proliferation markers to correlate PHF7 expression levels with proliferative activity

    • Use markers of differentiation status to determine how PHF7 expression affects the differentiation state of germ cells

    • Implement time-course studies to track tumorigenic transformation from early PHF7 expression to full tumor development

  • Molecular Characterization of Tumors:

    • Perform co-immunostaining with FITC-conjugated PHF7 antibody and antibodies against male germ cell-specific proteins that are ectopically expressed due to PHF7 activity

    • Use markers of epigenetic modifications (H3K4me2, H3K9me3) to assess chromatin state changes in tumor cells

    • Incorporate RNA FISH techniques to simultaneously visualize PHF7 protein and transcript levels of PHF7-regulated genes

  • Lineage Tracing Approaches:

    • Combine FITC-conjugated PHF7 antibody with cell lineage markers to determine the cellular origin of tumors

    • Use the GAL4-UAS system with fluorescent reporters to label cells with ectopic PHF7 expression and track their fate

    • Implement mosaic analysis techniques to generate PHF7-expressing clones within normal tissue

  • Functional Analysis Using Genetic Tools:

    • In PHF7-induced tumor models, co-stain for PHF7 and products of potential downstream target genes

    • Use PHF7 dosage-sensitive tumor models to correlate PHF7 levels with tumor phenotype severity

    • Combine with markers for autophagy, apoptosis, or cellular stress to assess tumor cell viability

  • Transcriptional Reprogramming Assessment:

    • Research has shown that ectopic PHF7 in female germ cells leads to inappropriate expression of hundreds of genes, many of which are male germline genes

    • Use FITC-labeled PHF7 antibody in combination with markers for these inappropriately expressed genes

    • Correlate PHF7 expression levels with the extent of transcriptional reprogramming in tumor cells

This comprehensive approach provides insights into how ectopic PHF7 expression leads to tumor formation by reprogramming female germ cells toward a male-like transcriptional program.

What are the technical considerations for multi-color immunofluorescence with PHF7 antibody, FITC conjugated?

Multi-color immunofluorescence experiments involving PHF7 antibody, FITC conjugated require careful planning and execution:

  • Fluorophore Selection and Spectral Compatibility:

    • FITC has excitation/emission peaks at approximately 495/520 nm (green spectrum)

    • Choose complementary fluorophores with minimal spectral overlap, such as TRITC (red), Cy5 (far-red), or Alexa Fluor dyes

    • For three or more colors, consider fluorophores with well-separated emission spectra

    • Account for tissue autofluorescence, which often occurs in the green spectrum and may interfere with FITC detection

  • Antibody Compatibility and Staining Sequence:

    • Verify that primary antibodies originate from different host species to prevent cross-reactivity

    • When antibodies are from the same species, consider using directly conjugated antibodies and sequential staining protocols

    • For PHF7 antibody, FITC conjugated, perform staining last in the sequence to minimize exposure to light and washing steps

    • Test for potential cross-reactivity between antibodies before performing critical experiments

  • Fixation and Antigen Retrieval Optimization:

    • Ensure the selected fixation method is compatible with all targeted antigens

    • Optimize antigen retrieval protocols if needed, ensuring they don't cause FITC degradation

    • Balance permeabilization to allow access to nuclear antigens without causing excessive background

  • Imaging and Analysis Considerations:

    • Use sequential scanning on confocal microscopes to minimize bleed-through

    • Apply appropriate controls for spectral unmixing and bleed-through correction

    • Optimize exposure settings for each channel independently

    • Consider photobleaching characteristics: FITC bleaches relatively quickly compared to some other fluorophores

  • Controls for Multi-color Experiments:

    • Include single-stained controls for each fluorophore to establish proper exposure settings

    • Use fluorescence minus one (FMO) controls to set accurate thresholds for positive signal

    • Include biological controls such as tissues known to be positive or negative for PHF7

By addressing these technical considerations, researchers can successfully implement multi-color immunofluorescence experiments that provide valuable insights into the relationship between PHF7 and other proteins in the context of germ cell development and tumor formation.

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