SBA1 Antibody

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Description

Definition and Biological Context

SBA1 antibody refers to antibodies targeting the SBA1 protein, a yeast ortholog of human p23, which functions as a heat shock protein 90 (Hsp90) cochaperone. SBA1 plays a role in stabilizing Hsp90-client protein interactions during stress responses and molecular chaperone activity .

Gene and Protein Structure

  • Gene: SBA1 (Saccharomyces cerevisiae) encodes a 1,269-bp open reading frame (ORF) with a conserved p23 domain .

  • Expression: Constitutively expressed in yeast but nonessential; deletion mutants show growth defects at extreme temperatures (18°C and 37°C) .

  • Interactions: Binds Hsp90 and cyclophilin homolog Cpr6 in vitro .

Functional Domains

DomainFunctionBinding Partners
p23 domainStabilizes Hsp90-client complexesHsp90, Cpr6
N-terminalRegulatory motifsATP-dependent binding

Research Applications of SBA1 Antibodies

SBA1 antibodies are critical for studying fungal pathogens like Candida albicans, where Sba1 (ortholog of SBA1) interacts with Hsp90. Key assays include:

FRET-Based Binding Assays

  • Purpose: Quantify Sba1-Hsp90 interactions using Förster Resonance Energy Transfer (FRET) .

  • Key Findings:

    • K<sub>i</sub> value: 100 ± 10 nM for unlabeled Sba1 competing with fluorescently tagged Sba1 .

    • Complementarity: Binding requires structural alignment of Hsp90’s ATPase domain with Sba1’s p23 domain .

Table 1: Functional Assays Involving SBA1 Antibodies

Assay TypeTarget OrganismKey MetricsCitation
FRETC. albicansK<sub>d</sub> = 1.95 ± 0.23 µM
Affinity IsolationS. cerevisiaeCo-isolates Hsp90 and Cpr6

Table 2: Genetic Manipulation of SBA1

ModificationPhenotypeExperimental Use
sba1-1::URA3Slow growth at 18°C and 37°CStress response studies
GAL1-promoterOverexpression under galactoseProtein interaction assays

Implications in Pathogen Studies

  • Candida albicans: Sba1-Hsp90 interactions are critical for fungal viability, making SBA1 antibodies potential antifungal drug targets .

  • Synthetic Lethality: Double deletion of SBA1 and STI1 (another Hsp90 cochaperone) exacerbates growth defects, highlighting functional redundancy .

Limitations and Future Directions

  • Specificity: Current antibodies lack cross-reactivity with mammalian p23, limiting translational studies .

  • Therapeutic Potential: Further structural studies are needed to design inhibitors blocking Sba1-Hsp90 binding in fungal pathogens .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
SBA1 antibody; YKL117W antibody; YKL518Co-chaperone protein SBA1 antibody
Target Names
SBA1
Uniprot No.

Target Background

Function
SBA1 Antibody acts as a co-chaperone.
Gene References Into Functions
  1. The crystal structure of full-length yeast Hsp90 in complex with an ATP analogue and the co-chaperone p23/Sba1 has been elucidated. PMID: 16625188
  2. SBA1 is crucial for maintaining telomere length. It can moderate telomerase DNA binding and extension activities in vitro. PMID: 17389357
  3. Structure-function analysis suggests that Sba1p undergoes structural rearrangements upon binding Hsp90, and the extensive interaction surface between p23/Sba1p and Hsp90 ensures high affinity despite sequence divergence during evolution. PMID: 18362168
Database Links

KEGG: sce:YKL117W

STRING: 4932.YKL117W

Protein Families
P23/wos2 family

Q&A

What is the Serum Bactericidal Assay (SBA) and how does it measure antibody functionality?

SBA is a functional assay that evaluates the capacity of antibodies to mediate complement-dependent killing of bacteria. The methodology assesses complement-mediated lysis of Gram-negative bacteria such as Shigella species. When antibodies of relevant subclasses bind to bacterial surface antigens, they trigger the classical and alternative pathways of complement activation, which culminate in the assembly of a lytic pore and bacterial killing .

The standard protocol involves:

  • Incubating bacteria with serial dilutions of test serum containing antibodies

  • Adding an exogenous complement source

  • Measuring bacterial survival compared to controls

  • Calculating the serum dilution that results in a specific percentage of bacterial killing

SBA is particularly valuable as it assesses the functional activity of antibodies rather than merely their presence or binding capacity, making it more physiologically relevant to protective immunity .

Why is SBA considered an important functional assay in antibody research?

SBA has become a cornerstone functional assay for several critical reasons:

  • It is widely used by vaccine developers to measure antibody functionality against Gram-negative bacteria

  • High SBA titers have been associated with protection from moderate to severe disease in multiple studies

  • It provides information beyond mere antibody binding, assessing the capacity of antibodies to effectively trigger complement activation

  • SBA titers have been shown to correlate with clinical protection, making it a potential correlate of protection for diseases like shigellosis

  • It indirectly provides information about opsonization efficiency, which is relevant to multiple immune defense mechanisms

What bacterial targets are primarily measured in SBA for Shigella research?

In Shigella research, SBA primarily measures antibody activity against:

  • Lipopolysaccharide (LPS) and O-antigen: These surface structures provide abundant and repetitive antigens that favor antibody hexamerization and complement deposition

  • Outer membrane proteins: While less prominent than LPS in SBA, certain membrane proteins can also be targets for complement-activating antibodies

  • Whole bacteria: Using intact bacteria provides the most physiologically relevant assessment

Bactericidal activity in Shigella research is mainly attributed to anti-LPS/O-antigen antibodies, as these structures provide abundant surface antigens that effectively trigger complement activation and deposition .

How do SBA results compare with other functional antibody assays for Shigella?

The relationship between SBA and other functional assays reveals important insights:

AssayPrimary MechanismCorrelation with SBAUnique Insights
Opsonophagocytic Killing Assay (OPKA)Antibody-mediated phagocytosis and killingGenerally correlates with SBA titersProvides information about cellular immunity contribution
Opsonophagocytic Assay (OPA)Antibody-mediated phagocytosis without killingSometimes diverges from SBAReveals antibody functionality against specific antigens
Adhesion/Invasion Inhibition Assay (AIA)Antibody capacity to block bacterial adhesion/invasionNot always correlated with SBAOnly assay simulating events at intestinal lumen

Research has shown that while SBA and OPKA results typically correlate with each other and with symptom severity, OPA assays with specific antigens can provide different insights . In one study, OAg- and IpaB-antibodies negatively correlated with symptom severity in an OPA assay, providing complementary information to SBA and OPKA titers .

What factors affect the reliability and reproducibility of SBA?

Critical factors impacting SBA reliability include:

  • Bacterial growth conditions:

    • Environmental cues (bile salts, pH, temperature, glucose concentration, oxygen)

    • Growth phase (log phase bacteria typically used)

    • Bacterial strain and passage history

  • Complement source:

    • Origin (human vs animal)

    • Storage conditions

    • Concentration and activity

  • Assay conditions:

    • Incubation time and temperature

    • Buffer composition

    • Starting bacterial concentration

  • Technical factors:

    • Operator variability

    • Plating technique for bacterial enumeration

    • Equipment calibration

Research indicates that expression and structural modifications of relevant surface antigens are modulated by environmental factors that signal bacterial localization between the small and large intestine. Factors like deoxycholate exposure (bile salt) and oxygen density combined with the presence of eukaryotic membranes are especially important for standardization .

How can researchers interpret SBA titers in the context of protective immunity?

Interpreting SBA titers requires consideration of multiple factors:

  • Correlation with protection:

    • In human studies, high SBA titers have been associated with protection from moderate to severe shigellosis

    • SBA titers, along with IpaB- and VirG-specific IgG, significantly correlate with reduced illness in challenge studies

  • Relationship to antibody specificity:

    • Anti-LPS/O-antigen antibodies primarily drive bactericidal activity

    • The contribution of antibodies against other antigens may not be fully captured

  • Limitations in prediction:

    • SBA measures extracellular killing only, while Shigella is primarily an intracellular pathogen

    • Protection may involve multiple mechanisms beyond complement-mediated killing

  • Integration with other data:

    • Consider results from other functional assays (OPKA, invasion inhibition)

    • Evaluate antigen-specific antibody levels alongside functional data

Researchers should view SBA titers as one component of a comprehensive immune assessment rather than an absolute predictor of protection .

How should researchers design SBA experiments for Shigella vaccine studies?

Optimal SBA experimental design for vaccine studies includes:

  • Study design considerations:

    • Collect pre- and post-vaccination samples

    • Include appropriate time points to capture peak responses and durability

    • Consider both homologous and heterologous bacterial strains to assess cross-reactivity

  • Sample processing:

    • Standardized serum collection and storage protocols

    • Heat-inactivation to eliminate endogenous complement

    • Absorption steps to remove non-specific reactivity if needed

  • Controls and standards:

    • Positive control (serum with known bactericidal activity)

    • Negative control (complement only, no serum)

    • Complement control (heat-inactivated complement)

    • Reference standard serum for inter-assay comparison

  • Data analysis:

    • Determine seroconversion criteria (e.g., ≥4-fold rise in titer)

    • Compare geometric mean titers pre- and post-vaccination

    • Correlate with other immune parameters and clinical outcomes

This approach has been validated in studies evaluating live attenuated Shigella vaccine candidates like CVD 1204 and CVD 1208S, where SBA detected seroconversion rates of 71% and 47%, respectively .

What is the relationship between SBA and intracellular bacteria control?

Although Shigella is primarily an intracellular pathogen, SBA results provide important insights into protection mechanisms:

  • Extracellular phase importance:

    • Reducing bacterial burden before cellular invasion can limit disease progression

    • Complement-mediated killing can occur in the gut lumen and submucosa

  • Indirect mechanisms:

    • Complement deposition on bacteria (which SBA measures) can signal to phagocytes via Fcγ receptors and phagocytic complement receptors CR1 and CR3

    • Complement-tagged bacteria that manage to invade cells may be more readily cleared through autophagy-dependent mechanisms

  • Correlation with protection:

    • Despite Shigella's intracellular lifestyle, SBA titers correlate with protection from disease

    • This suggests that antibody-mediated extracellular control is a significant component of immunity

Research indicates that the valence of SBA could extend beyond bacterial lysis, indirectly providing a general indication of opsonization efficiency, which is relevant to multiple immune defense mechanisms .

How do antibodies against specific Shigella antigens contribute differentially to functional protection?

The contribution of antibodies against specific Shigella antigens in functional assays varies:

  • LPS/O-antigen antibodies:

    • Primarily drive SBA activity due to abundant surface expression

    • Enable efficient complement deposition through antibody hexamerization

    • Have been shown to inhibit invasion of epithelial cells in adhesion/invasion assays

    • Sera from children immunized with S. flexneri 2a or S. sonnei OAg fraction of LPS inhibit bacterial invasion of epithelial cells

  • Invasion plasmid antigen (Ipa) antibodies:

    • IpaB- and IpaD-specific antibodies correlate with protection

    • Mice immunized with IpaB and IpaD developed protective immune responses (both IgG and IgA) upon challenge

    • May block T3SS function and prevent host cell invasion

    • Their contribution to SBA may be limited by transient accessibility

  • VirG/IcsA antibodies:

    • Correlate with protection in human challenge studies

    • Target a key protein involved in actin-based motility

These findings suggest that while anti-LPS antibodies dominate in SBA, antibodies targeting invasion proteins significantly correlate with reduced illness severity through multiple protective mechanisms .

How can researchers address variability in antigen expression when performing SBA?

Researchers face challenges with variable antigen expression in SBA:

  • Environmental regulation of expression:

    • Bile salts (deoxycholate) exposure induces virulence gene expression

    • Oxygen concentration affects Type III Secretion System (T3SS) expression

    • Temperature and pH influence membrane protein conformation

  • Impact on SBA:

    • Variable expression of key antigens alters antibody binding

    • Transient accessibility of Ipa proteins in the tip complex affects neutralization

    • Environmental cues influence translocation of proteins from cytosol to bacterial surface

  • Standardization approaches:

    • Growth in media containing deoxycholate (bile salt)

    • Control of oxygen density during bacterial culture

    • Consistent growth temperature and phase

    • Pre-treatment conditions that mimic the intestinal environment

    • Inclusion of eukaryotic membranes to trigger virulence factor expression

Research indicates that deoxycholate exposure and oxygen density combined with the presence of eukaryotic membranes are promising conditions to standardize for SBA with Shigella .

What emerging approaches can enhance SBA methodology for antibody evaluation?

Advanced methodological improvements include:

  • Physiologically relevant conditions:

    • Incorporating factors that mimic the intestinal environment (bile salts, pH)

    • Using bacteria grown under conditions that induce virulence gene expression

  • Standardization approaches:

    • Developing reference sera with assigned titers

    • Establishing consensus protocols across laboratories

    • Using standardized bacterial strains

  • Combined assay systems:

    • Sequential assays that measure multiple functions (e.g., SBA followed by phagocytosis)

    • Complementary assays testing different aspects of antibody function

  • Targeted antibody design:

    • Rational design of antibodies targeting specific epitopes within disordered proteins or regions

    • Selection of stable antibody scaffolds tolerant to grafting of complementary peptides

    • Development of single domain antibody platforms for targeting specific bacterial epitopes

These approaches can increase the physiological relevance and throughput of SBA for vaccine evaluation while enabling more precise targeting of key bacterial epitopes.

How should researchers interpret discrepancies between SBA results and antigen-specific antibody levels?

When SBA results don't align with antigen-specific antibody measurements:

Research has shown that measurement of antibody levels alone may limit the evaluation of vaccine potential, making functional assays like SBA particularly valuable .

How do SBA and OPKA results compare as potential correlates of protection against Shigella?

Comparison of SBA and OPKA as correlates of protection:

AspectSBAOPKA
Mechanism measuredAntibody-complement mediated bacterial lysisAntibody-mediated phagocytosis and killing
Correlation with protectionHigh SBA titers associated with reduced disease severityOPKA titers also correlate with protection
Implementation complexityRelatively straightforward, fewer componentsMore complex, requires cell culture
Clinical validationEstablished in multiple challenge studiesCorrelated with protection in vaccine studies

Research findings:

  • Both SBA and OPKA titers inversely correlate with symptom severity in clinical studies

  • The two assays often show correlation with each other, suggesting overlapping protective mechanisms

  • In Shigella vaccine studies (e.g., with CVD 1204 and CVD 1208S), both assays detected immune responses with SBA showing seroconversion rates of 71% and 47% for CVD 1204 and CVD 1208S, respectively, while OPKA showed rates of 57% and 35%

The combined use of both assays provides complementary information about different aspects of antibody-mediated protection .

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