SEC14L2 Antibody, Biotin conjugated

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Description

Western Blotting (WB)

  • Protocol: Antibodies are diluted 1:1000–1:2000 in blocking buffer (e.g., 5% BSA) and incubated overnight at 4°C .

  • Key Findings: WB has been used to confirm SEC14L2 knockdown efficiency in studies linking SEC14L2 to VEGFR2 signaling. For example, SEC14L2 knockdown in HUVECs reduced VEGFR2-Y1175 phosphorylation, impairing endothelial tube formation .

Immunohistochemistry (IHC)

  • Protocol: Tissue sections are fixed, permeabilized, and blocked before antibody incubation (1:50–1:200 dilution) .

  • Key Findings: IHC has localized SEC14L2 in endothelial cells, supporting its role in angiogenesis .

ELISA

  • Protocol: Biotinylated antibodies enable high-sensitivity detection via streptavidin-HRP conjugates .

  • Key Findings: ELISA-based studies have quantified SEC14L2 in serum or cell lysates, aiding in biomarker research .

Role in VEGFR2 Signaling

SEC14L2 interacts with VEGFR2 to modulate its phosphorylation and signaling. Biotin-conjugated antibodies have been critical in validating:

  • VEGFR2-Y1175 phosphorylation: SEC14L2 knockdown reduces this site’s phosphorylation, impairing AKT/ERK activation and endothelial migration .

  • PTP1B interaction: SEC14L2 prevents VEGFR2 from binding PTP1B, a phosphatase that dephosphorylates Y1175 .

Cholesterol Biosynthesis

SEC14L2 stimulates squalene monooxygenase, a key enzyme in cholesterol synthesis. Antibodies have been used to study its regulation in lipid metabolism .

Critical Considerations

  • Cross-reactivity: Aviva’s antibody shows 90% homology with Zebrafish, enabling zebrafish models .

  • Sensitivity: Biotin conjugation enhances detection in low-abundance samples (e.g., ELISA) .

  • Batch Variability: Users should validate each lot for consistency in WB/IHC .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, we can ship the products within 1-3 business days after receiving your order. Delivery times may vary depending on the purchase method and location. Please consult your local distributor for specific delivery information.
Synonyms
Alpha tocopherol associated protein antibody; Alpha-tocopherol-associated protein antibody; C22orf6 antibody; hTAP antibody; KIAA1186 antibody; KIAA1658 antibody; MGC65053 antibody; OTTHUMP00000198972 antibody; OTTHUMP00000198973 antibody; OTTHUMP00000198974 antibody; OTTHUMP00000199021 antibody; S14L2_HUMAN antibody; SEC14 (S. cerevisiae) like 2 antibody; SEC14 like 2 (S. cerevisiae) antibody; SEC14 like protein 2 antibody; SEC14-like protein 2 antibody; Sec14l2 antibody; SPF antibody; Squalene transfer protein antibody; Supernatant protein factor antibody; TAP antibody; TAP1 antibody; tocopherol-associated protein antibody
Target Names
SEC14L2
Uniprot No.

Target Background

Function
SEC14L2 is a carrier protein that binds to certain hydrophobic molecules and facilitates their transfer between cellular compartments. It exhibits high affinity binding to alpha-tocopherol and weaker affinity to other tocopherols and tocotrienols. SEC14L2 may possess transcriptional activator activity through its association with alpha-tocopherol. Notably, it recognizes and binds to specific squalene structures, suggesting a potential role in regulating cholesterol biosynthesis by enhancing the transfer of squalene to metabolically active pools within the cell.
Gene References Into Functions
  1. Research suggests that the zebrafish/human phosphatidylinositol transfer protein Sec14l3/SEC14L2 function as GTPase proteins, relaying Wnt signals from Frizzled to phospholipase C (PLC). PMID: 28463110
  2. hTAP1 has been shown to reduce the in vitro activity of phosphatidylinositol-3-kinase gamma (PI3Kgamma), indicating the formation of an inactive hTAP1/PI3Kgamma heterodimer. PMID: 24983950
  3. Overexpression of human tocopherol-associated protein 1 (hTAP1/SEC14L2) has been observed to decrease PI3Kgamma-induced VEGF expression, suggesting the formation of an inactive PI3Kgamma/hTAP1 heterodimer. PMID: 25290554
  4. SEC14L2 has been found to facilitate RNA replication of diverse HCV genotypes in various human hepatoma cell lines. PMID: 26266980
  5. Studies have identified a novel association between the rs737723 polymorphism (SEC14L2/TAP) and an increased risk of primary open-angle glaucoma. PMID: 23401652
  6. TAP expression has been found to be significantly correlated with Her2/neu receptor expression and breast cancer stage. PMID: 23411208
  7. Research describes the cloning of rat SEC14-like protein 3 and mentions three human SPF-related genes: SEC14-like protein 1, 2, and 3. PMID: 15033454
  8. SPF exhibits a two-domain topology, and its ligand binding cavity displays a unique horseshoe-like shape. PMID: 12429094
  9. Phosphorylation enhances SPF's ability to stimulate microsomal squalene monooxygenase, suggesting that phosphorylation may serve as a mechanism for rapid short-term modulation of cholesterol synthesis. PMID: 12454003
  10. Research reports the three-dimensional crystal structure of human supernatant protein factor in complex with RRR-alpha-tocopherylquinone, the primary physiological oxidation product of RRR-alpha-tocopherol, at a resolution of 1.95A. PMID: 12972248
  11. TAP not only facilitates vitamin E absorption to promote its antiproliferative effect in prostate cancer cells but also acts as a tumor suppressor gene to regulate cancer cell viability through non-vitamin E mechanisms. PMID: 16267002
  12. Reduced TAP expression has been linked to prostate cancer cell proliferation, adverse pathological parameters, and an increased risk of recurrence. PMID: 17334589
  13. Genetic variations in TTPA and SEC14L2 have been associated with serum alpha-tocopherol levels but do not directly impact prostate cancer when vitamin E is administered. PMID: 19190344
  14. Findings suggest that alpha-tocopherol-associated protein acts as an antiproliferative factor in estrogen-receptor-positive luminal cells in normal/benign breast tissue. PMID: 19305383
  15. Research suggests that TAP/Sec14L2 may function as a tumor suppressor in breast carcinogenesis. PMID: 19909011

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Database Links

HGNC: 10699

OMIM: 607558

KEGG: hsa:23541

STRING: 9606.ENSP00000316203

UniGene: Hs.335614

Subcellular Location
Cytoplasm. Nucleus. Note=Cytoplasmic in absence of alpha-tocopherol, and nuclear in presence of alpha-tocopherol.
Tissue Specificity
Widely expressed. Strong expression in liver, brain and prostate.

Q&A

What is SEC14L2 and why is it an important research target?

SEC14L2 is a carrier protein (approximately 36.6 kDa) that binds hydrophobic molecules and facilitates their transfer between different cellular locations. It demonstrates high affinity for alpha-tocopherol (vitamin E) and weaker affinity for other tocopherols and tocotrienols . The importance of SEC14L2 in research stems from its potential roles in transcriptional activation via association with alpha-tocopherol and in cholesterol biosynthesis regulation through squalene transfer . Its involvement in these fundamental cellular processes makes it a valuable target for studies related to lipid metabolism, vitamin E function, and cholesterol regulation. Researchers often study SEC14L2 expression and localization in conditions like cancer, metabolic disorders, and neurodegenerative diseases.

What are the advantages of using biotin-conjugated antibodies for SEC14L2 detection?

Biotin-conjugated SEC14L2 antibodies offer several methodological advantages for researchers. The biotin-streptavidin system provides signal amplification, enhancing detection sensitivity in various applications including ELISA, immunohistochemistry, and immunofluorescence . This amplification is particularly valuable when studying proteins with low expression levels or in samples with limited material. Additionally, biotin conjugation enables flexible detection strategies, as researchers can use various streptavidin-conjugated reporter molecules (HRP, fluorophores, gold particles) with the same primary antibody. This versatility eliminates the need for species-specific secondary antibodies, reducing background and cross-reactivity issues. The biotin-streptavidin interaction is also one of the strongest non-covalent biological interactions (Kd ≈ 10^-15 M), ensuring stable binding during multiple washing steps in protocols.

How does SEC14L2 antibody specificity compare to antibodies against other SEC14 family members?

To ensure specificity, researchers should validate antibodies using positive and negative controls:

  • Positive controls: Cells/tissues known to express SEC14L2 (e.g., prostate tissue, PC3 cells)

  • Negative controls: SEC14L2 knockout samples or cells with SEC14L2 siRNA knockdown

  • Western blot verification: Confirming the antibody detects a protein of the expected molecular weight (47, 45, or 37 kDa depending on isoform)

Cross-absorption with recombinant proteins from other SEC14 family members can also help confirm specificity for applications requiring absolute discrimination between family members.

What are the optimal storage conditions for maintaining biotin-conjugated SEC14L2 antibody activity?

Biotin-conjugated SEC14L2 antibodies require specific storage conditions to maintain their activity and prevent degradation. Most manufacturers recommend storing these antibodies at -20°C to -80°C for long-term preservation . For working aliquots, storage at 4°C for up to one month is typically acceptable. The antibody formulation often includes 50% glycerol and preservatives like 0.03% Proclin 300 in PBS (pH 7.4) to maintain stability during freeze-thaw cycles .

To maximize antibody performance and shelf-life, researchers should follow these methodological practices:

  • Prepare small aliquots (10-20 µL) upon receipt to minimize freeze-thaw cycles

  • Allow antibodies to thaw completely at room temperature before opening vials to prevent condensation

  • Briefly centrifuge vials after thawing to collect any liquid trapped in the cap

  • Avoid exposing biotin-conjugated antibodies to strong light, which can degrade both the antibody and the biotin molecule

  • Monitor antibody performance periodically using positive controls to ensure continued activity

How can biotin-conjugated SEC14L2 antibodies be utilized in proximity labeling studies?

Biotin-conjugated SEC14L2 antibodies can serve as powerful tools in proximity labeling studies, allowing researchers to identify protein-protein interactions and map the SEC14L2 interactome. The biotinylation by antibody recognition (BAR) method leverages antibody specificity to target proteins of interest for proximity labeling . In this approach, researchers can:

  • Target SEC14L2 with the biotin-conjugated antibody in fixed or permeabilized cells

  • Apply a streptavidin-conjugated enzyme (such as HRP or APEX2)

  • Introduce biotin-phenol or hydrogen peroxide to generate reactive radicals

  • Allow labeling of proteins in close proximity (typically within 20-50 nm)

  • Isolate biotinylated proteins using streptavidin beads

  • Identify interaction partners through mass spectrometry

This methodology offers several advantages over traditional methods:

  • It doesn't require genetic manipulation of the target protein

  • It enables detection of transient or weak interactions

  • It provides spatial information about protein localization

  • It can be applied to endogenous proteins in their native environment

Researchers should optimize permeabilization conditions to ensure antibody access while maintaining cellular architecture for meaningful proximity data.

What are the critical optimization steps for using biotin-conjugated SEC14L2 antibodies in multiplex immunofluorescence?

Multiplex immunofluorescence with biotin-conjugated SEC14L2 antibodies requires careful optimization to achieve specific staining while avoiding cross-reactivity and background issues. The following methodological steps are critical:

  • Antibody titration: Determine the optimal concentration (typically starting with 1:50-1:200 dilution for IF applications) using positive control samples

  • Blocking optimization: Test different blocking agents (BSA, normal serum, commercial blockers) to minimize non-specific binding

  • Sequential staining order: Position the biotin-conjugated antibody strategically within the multiplex panel to minimize interference

  • Streptavidin conjugate selection: Choose fluorophores with minimal spectral overlap with other channels

  • Signal amplification calibration: Balance sensitivity needs against potential background increase

Optimization ParameterRecommended Starting PointsNotes
Antibody dilution1:50-1:200Titrate on positive controls
Blocking buffer10% normal goat serumAlternative: 1-5% BSA
Incubation temperature4°COvernight incubation recommended
Streptavidin dilution1:100-1:500Fluorophore-dependent
Wash stringency3× 5 min washesPBS-T (0.1% Tween-20)

For cells, fixation with 4% formaldehyde and permeabilization with 0.2% Triton X-100 provides a starting point for protocol optimization . For tissue sections, antigen retrieval methods (high-pressure citrate buffer, pH 6.0) should be evaluated to ensure optimal epitope accessibility while preserving tissue morphology .

How can researchers quantitatively assess the efficiency of biotin-conjugated SEC14L2 antibodies in various applications?

Quantitative assessment of biotin-conjugated SEC14L2 antibody efficiency is essential for reproducible research. Researchers can employ several methodological approaches to evaluate antibody performance across applications:

For ELISA applications:

  • Generate standard curves using recombinant SEC14L2 protein at known concentrations

  • Calculate the limit of detection (LoD) and limit of quantification (LoQ)

  • Determine the linear dynamic range and coefficient of variation (CV)

  • Compare signal-to-noise ratios with unconjugated antibodies using matched pairs

For Western blot applications:

  • Perform serial dilutions of both antibody and protein lysate

  • Calculate the detection limit by densitometric analysis

  • Evaluate consistency across technical replicates

  • Compare band intensities between biotin-conjugated and unconjugated versions

For immunohistochemistry/immunofluorescence:

  • Apply digital image analysis using software like ImageJ or CellProfiler

  • Quantify staining intensity across multiple fields and samples

  • Calculate background-to-specific signal ratios

  • Perform co-localization analysis with established markers

  • Conduct reproducibility assessment across independent staining sessions

Creating a validation matrix that includes positive controls (PC3 cells for SEC14L2) , negative controls, and comparative analysis with orthogonal detection methods provides comprehensive performance metrics that should be reported in publications to enhance reproducibility.

What are the mechanisms behind false positives in biotin-conjugated antibody systems and how can they be mitigated?

False positives with biotin-conjugated SEC14L2 antibodies can arise from multiple mechanisms that researchers must understand to implement effective mitigation strategies:

  • Endogenous biotin interference:

    • Mechanism: Many tissues (especially liver, kidney, brain) contain endogenous biotin

    • Mitigation: Apply avidin/biotin blocking kits before antibody incubation

  • Fc receptor binding:

    • Mechanism: Fc receptors on immune cells can bind antibody Fc regions

    • Mitigation: Include Fc receptor blocking reagents in the protocol

  • Hydrophobic interactions:

    • Mechanism: SEC14L2's hydrophobic binding properties may contribute to non-specific binding

    • Mitigation: Optimize detergent concentrations in wash buffers and blocking solutions

  • Biotinylation-induced conformational changes:

    • Mechanism: Biotin conjugation may alter antibody paratope structure

    • Mitigation: Use antibodies with site-specific biotinylation rather than random NHS-biotin conjugation

  • Streptavidin/avidin sticky properties:

    • Mechanism: Streptavidin can bind non-specifically to certain tissue components

    • Mitigation: Evaluate different streptavidin conjugates and manufacturers

To systematically address false positives, researchers should implement these validation controls:

  • Primary antibody omission control

  • Isotype control with matched biotin conjugation level

  • Pre-adsorption with recombinant SEC14L2 antigen

  • SEC14L2 knockdown/knockout samples

  • Alternative detection method comparison

These methodological controls should be documented in research publications to demonstrate antibody specificity and reliability.

What are the optimal fixation and permeabilization conditions for SEC14L2 detection in different sample types?

The detection of SEC14L2 using biotin-conjugated antibodies requires optimized fixation and permeabilization conditions that preserve antigenicity while maintaining cellular architecture. Different sample types require tailored approaches:

For cultured cells:

  • Fixation with 4% formaldehyde for 10-15 minutes at room temperature preserves most epitopes

  • Permeabilization with 0.2% Triton X-100 for 5-10 minutes allows antibody access to intracellular targets

  • For membrane-associated pools of SEC14L2, gentler permeabilization with 0.1% saponin may better preserve localization

For tissue sections:

  • Formalin-fixed paraffin-embedded (FFPE) tissues require antigen retrieval, with high-pressure citrate buffer (pH 6.0) serving as an effective starting point

  • Fresh frozen tissues may require brief fixation (2-4% PFA) prior to antibody staining

  • Thickness affects antibody penetration; 5-7 μm sections are typically optimal

For in situ proximity ligation assays:

  • Methanol-acetone (1:1) fixation at -20°C can improve nuclear epitope accessibility

  • Cross-validation of multiple fixation methods may be necessary to identify optimal conditions

Researchers should systematically evaluate different conditions in a matrix experiment, comparing signal intensity, background levels, and morphological preservation to identify the optimal protocol for their specific experimental system.

How should researchers design titration experiments to determine optimal biotin-conjugated SEC14L2 antibody concentrations?

Proper titration of biotin-conjugated SEC14L2 antibodies is crucial for achieving optimal signal-to-noise ratios across different applications. A systematic titration approach should follow these methodological steps:

  • Begin with a broad concentration range based on manufacturer recommendations (typically 1:50-1:5000 for Western blot, 1:50-1:200 for immunofluorescence)

  • Use a minimum of 5-7 dilution points with 2-fold or 3-fold concentration changes

  • Include appropriate positive and negative controls (e.g., PC3 cells as positive control)

  • Maintain consistent experimental conditions across all dilution points

  • Quantify both specific signal and background for each concentration

  • Calculate signal-to-noise ratio for each concentration point

The titration experiment results can be analyzed and presented in a quantitative format:

Antibody DilutionSignal IntensityBackgroundSignal-to-Noise RatioNotes
1:501875 ± 125534 ± 483.51High specific signal but elevated background
1:1001456 ± 98312 ± 374.67Good balance of signal and background
1:200978 ± 87165 ± 225.93Optimal S/N ratio for most applications
1:400645 ± 5698 ± 186.58Maximum S/N but signal may be too weak
1:800321 ± 3875 ± 154.28Signal approaching detection limit

When measuring signal in image-based assays, researchers should use integrated density measurements rather than peak intensity to account for differences in signal distribution. For Western blot applications, quantification should be performed using densitometry of the specific band (47 kDa for SEC14L2) compared to background areas of the same lane.

What controls are necessary when using biotin-conjugated SEC14L2 antibodies in co-localization studies?

Co-localization studies using biotin-conjugated SEC14L2 antibodies require rigorous controls to ensure reliable interpretation of spatial relationships between proteins. Researchers should implement the following essential controls:

  • Single-staining controls:

    • Stain samples with each antibody individually to verify fluorophore specificity

    • Image using all acquisition channels to assess spectral bleed-through

  • Antibody specificity controls:

    • Primary antibody omission to detect non-specific streptavidin binding

    • Isotype control antibodies conjugated with biotin

    • Pre-adsorption with recombinant SEC14L2 protein

  • Biological controls:

    • SEC14L2-overexpressing cells to confirm signal increase

    • SEC14L2 knockdown samples to verify signal reduction

    • Known co-localization partners as positive controls (e.g., alpha-tocopherol transfer protein)

    • Known non-co-localizing proteins as negative controls

  • Technical controls:

    • Acquire images of sub-resolution beads to assess chromatic aberration

    • Random co-localization simulation to establish statistical thresholds

    • Pixel shift analysis to confirm specificity of co-localization patterns

For quantitative co-localization analysis, researchers should:

  • Calculate multiple co-localization coefficients (Pearson's, Manders', etc.)

  • Perform statistical analysis across multiple cells/fields

  • Report sample sizes, coefficient values, and statistical significance

  • Include representative images showing channel overlap and co-localization masks

These controls allow researchers to distinguish genuine biological co-localization from technical artifacts, particularly important when studying SEC14L2's dynamic interactions with lipid molecules and membrane structures.

How can researchers effectively troubleshoot weak or absent signals when using biotin-conjugated SEC14L2 antibodies?

When encountering weak or absent signals with biotin-conjugated SEC14L2 antibodies, researchers should implement a systematic troubleshooting approach. The following methodological flowchart addresses common issues:

  • Verify antibody integrity:

    • Check storage conditions and expiration date

    • Test antibody activity using a dot blot with recombinant SEC14L2

    • Consider possible degradation of the biotin conjugate

  • Optimize antigen retrieval (for tissue sections):

    • Compare different AR methods (citrate, EDTA, enzymatic)

    • Adjust pH, temperature, and duration of AR

    • For FFPE tissues, excessive fixation may require extended AR

  • Enhance antibody accessibility:

    • Increase permeabilization stringency (concentration, time)

    • Reduce sample thickness for better penetration

    • Consider alternative detergents (Triton X-100, saponin, Tween-20)

  • Amplify detection signal:

    • Implement tyramide signal amplification (TSA)

    • Use poly-HRP or poly-streptavidin systems

    • Increase antibody concentration after ruling out specificity issues

    • Extended incubation times (overnight at 4°C)

  • Verify target expression:

    • Confirm SEC14L2 expression in the sample type using RT-PCR

    • Use known positive control samples (PC3 cells, prostate tissue)

    • Consider possible epitope masking by protein interactions

  • Reduce interfering factors:

    • Block endogenous biotin with avidin/biotin blocking kits

    • Quench autofluorescence with sodium borohydride or CuSO₄

    • Add additional blocking agents (BSA, serum, commercial blockers)

  • Check detection system:

    • Verify streptavidin-conjugate activity with biotinylated control proteins

    • Test alternative streptavidin conjugates from different manufacturers

    • For HRP systems, prepare fresh substrate solution

Each troubleshooting step should be documented systematically, changing only one variable at a time to identify the specific issue affecting antibody performance.

How should researchers interpret variations in SEC14L2 staining patterns across different tissue types?

Interpreting variations in SEC14L2 staining patterns requires an understanding of its biological function and expected expression patterns. SEC14L2 is involved in intracellular lipid transport and may show different subcellular localizations depending on tissue type and physiological state . Researchers should consider these methodological principles when analyzing staining patterns:

  • Subcellular localization assessment:

    • Cytoplasmic: Consistent with role in lipid transport

    • Nuclear: May indicate involvement in transcriptional regulation

    • Membrane-associated: Suggests interactions with membrane components

    • Punctate patterns: Potential association with specific organelles

  • Tissue-specific expression analysis:

    • Compare relative staining intensities using standardized exposure times

    • Document expression patterns across tissue types using systematic scoring

    • Correlate with known lipid metabolism activities of different tissues

  • Pattern heterogeneity evaluation:

    • Quantify cell-to-cell variability within the same tissue

    • Assess relationship to cellular states (proliferation, differentiation)

    • Compare normal vs. pathological samples for alterations in pattern

A standardized scoring system should be employed:

Pattern FeatureScore 0Score 1Score 2Score 3
IntensityNegativeWeakModerateStrong
% Positive Cells<10%10-25%26-75%>75%
Nuclear LocalizationAbsentWeakModerateStrong
Cytoplasmic LocalizationAbsentWeakModerateStrong
Membrane AssociationAbsentWeakModerateStrong

This systematic approach allows for quantitative comparison across different samples and experimental conditions, facilitating the identification of biologically significant variations in SEC14L2 expression and localization.

What statistical approaches are most appropriate for quantifying SEC14L2 expression in immunohistochemistry studies?

Quantitative analysis of SEC14L2 expression in immunohistochemistry requires rigorous statistical approaches to ensure reproducibility and meaningful biological interpretation. Researchers should implement these methodological strategies:

To ensure robustness, researchers should perform power calculations to determine adequate sample sizes and consider multiple comparison corrections (e.g., Bonferroni, FDR) when analyzing SEC14L2 expression across different tissues or conditions. Digital pathology approaches using calibrated image analysis can enhance objectivity and provide continuous data suitable for more sensitive statistical analyses.

How can researchers differentiate between specific SEC14L2 staining and biotin-related background in challenging samples?

Differentiating specific SEC14L2 staining from biotin-related background is critical for accurate interpretation, particularly in tissues with high endogenous biotin (liver, kidney, brain) or when using amplification systems. Researchers can employ these methodological approaches:

  • Sequential evaluation strategy:

    • Examine controls first to establish background levels

    • Apply signal-to-noise thresholds based on control samples

    • Analyze test samples only after establishing specificity parameters

  • Spectral unmixing:

    • Perform multispectral imaging to capture full emission spectra

    • Use reference spectra from single-stained samples

    • Computationally separate specific signal from autofluorescence/background

  • Comparative analysis techniques:

    • Direct comparison with non-biotinylated SEC14L2 antibody detection

    • Side-by-side analysis with SEC14L2 mRNA expression (RNAscope/ISH)

    • Correlation with orthogonal protein detection methods (mass spectrometry)

  • Mathematical correction methods:

    • Background subtraction using matched isotype controls

    • Ratio imaging (specific/non-specific signal intensity)

    • Deconvolution algorithms to separate overlapping signals

  • Validation through intervention:

    • Competitive blocking with recombinant SEC14L2 protein

    • siRNA knockdown to confirm signal reduction

    • Gradient of expression in overexpression systems

Sample TypeEndogenous Biotin RiskRecommended Control Approach
Liver tissueHighAvidin/biotin blocking, non-biotin alternative detection
Brain tissueModerate-HighStreptavidin blocking, tissue-matched negative controls
Cell linesLow-ModerateBiotin-free culture media for 48h pre-fixation
Blood cellsLowStandard blocking sufficient

Researchers should document all steps taken to distinguish specific staining from background and include representative images of controls in publications to support staining pattern interpretation.

What approaches should researchers use to correlate SEC14L2 expression with functional outcomes in experimental models?

Correlating SEC14L2 expression with functional outcomes requires integrative experimental approaches that connect molecular observations to biological effects. Researchers should implement these methodological strategies:

  • Temporal analysis of expression-function relationships:

    • Time-course studies measuring SEC14L2 levels and functional parameters

    • Inducible expression systems to control timing of SEC14L2 modulation

    • Correlation of expression changes with functional readouts at multiple timepoints

  • Dose-response experimental design:

    • Generate cell lines with varying SEC14L2 expression levels

    • Measure functional outcomes across expression spectrum

    • Determine threshold levels required for specific effects

  • Intervention studies with appropriate controls:

    • SEC14L2 knockdown/knockout with rescue experiments

    • Domain-specific mutations to link structure to function

    • Pharmacological modulation of SEC14L2-dependent pathways

  • Multi-parameter correlation analysis:

    • Gene expression correlation networks

    • Protein-protein interaction mapping

    • Metabolomic profiling focused on SEC14L2-related lipids

  • Contextual dependency evaluation:

    • Microenvironmental manipulations (lipid availability, oxidative stress)

    • Cell type-specific effects through conditional models

    • Stress/stimulation response patterns

A comprehensive experimental design might include:

Experimental ApproachSEC14L2 Assessment MethodFunctional ReadoutStatistical Analysis
OverexpressionWestern blot, IF with biotin-conjugated antibodyLipid transport assayLinear regression, Pearson correlation
siRNA knockdownqRT-PCR, Western blotTocopherol uptake measurementt-test, ANOVA with dose groups
CRISPR knockoutImmunoblotting, IFCholesterol biosynthesis rateKaplan-Meier for time-to-effect
Chemical inhibitionProximity ligation assayTranscriptional reporter assayMultiple regression, mediation analysis

For each experiment, researchers should:

  • Include appropriate positive and negative controls

  • Validate antibody specificity in each model system

  • Use multiple methodologies to confirm expression changes

  • Apply statistical tests appropriate for the data distribution

  • Consider potential confounding factors in the experimental system

This multifaceted approach allows researchers to establish causal relationships between SEC14L2 expression and functional outcomes, rather than merely descriptive associations.

How are biotin-conjugated SEC14L2 antibodies being applied in single-cell analysis techniques?

Biotin-conjugated SEC14L2 antibodies are finding innovative applications in single-cell analysis technologies, enabling researchers to investigate cellular heterogeneity in SEC14L2 expression and function. These methodological approaches include:

  • Single-cell proteomics integration:

    • Mass cytometry (CyTOF) using biotin-conjugated SEC14L2 antibodies with metal-tagged streptavidin

    • Antibody-based droplet proteomics with barcoded streptavidin conjugates

    • Spatial proteomics combining biotin-SEC14L2 antibodies with in situ capturing methods

  • Multi-modal single-cell analysis:

    • CITE-seq approaches pairing SEC14L2 protein detection with transcriptomics

    • Correlation of SEC14L2 protein levels with metabolic profiles at single-cell resolution

    • Integration with genomic data to identify expression quantitative trait loci (eQTLs)

  • Microfluidic implementations:

    • On-chip immunocapture of SEC14L2-expressing cells using biotin-antibody/streptavidin systems

    • Single-cell Western blotting with biotin-SEC14L2 antibody detection

    • Droplet-based assays for SEC14L2 functional assessment

  • Spatial analysis applications:

    • Highly multiplexed imaging using cyclic staining with biotin-SEC14L2 antibodies

    • Super-resolution microscopy to resolve subcellular SEC14L2 localization patterns

    • 3D tissue imaging to map SEC14L2 expression in complex tissue architectures

These approaches require careful optimization of antibody concentrations, incubation conditions, and signal amplification strategies to maintain specificity while achieving the sensitivity needed for single-cell analysis. Researchers should validate single-cell findings with population-level measurements and consider the impact of fixation and permeabilization conditions on epitope accessibility in microfluidic or droplet-based systems.

What are the current challenges and solutions in using biotin-conjugated SEC14L2 antibodies for super-resolution microscopy?

Super-resolution microscopy with biotin-conjugated SEC14L2 antibodies presents specific challenges that researchers must address through methodological innovations. Current challenges and solutions include:

  • Spatial resolution limitations:

    • Challenge: The biotin-streptavidin complex adds approximately 5-8 nm to the detection system

    • Solutions:

      • Use smaller probes such as monovalent streptavidin

      • Apply direct STORM labeling of primary antibodies

      • Implement expansion microscopy to physically enlarge specimens

  • Labeling density optimization:

    • Challenge: Achieving sufficient labeling density for reconstruction while maintaining specificity

    • Solutions:

      • Titrate antibody concentration to balance density and background

      • Use small epitope tags and nanobodies for closer target approximation

      • Apply sequential labeling strategies to increase detection efficiency

  • Fluorophore selection considerations:

    • Challenge: Identifying optimal fluorophores compatible with both biotin conjugation and super-resolution

    • Solutions:

      • Use streptavidin conjugated to well-characterized STORM dyes (Alexa 647, Cy5)

      • Implement photoconvertible fluorophores for PALM approaches

      • Test multiple fluorophores empirically for each application

  • Sample preparation refinement:

    • Challenge: Standard fixation may alter nanoscale protein distribution

    • Solutions:

      • Test light fixation protocols (0.5-2% formaldehyde)

      • Compare chemical fixation with rapid freezing approaches

      • Validate findings with orthogonal super-resolution techniques

  • Quantitative analysis methods:

    • Challenge: Extracting meaningful quantitative data from super-resolution images

    • Solutions:

      • Develop cluster analysis algorithms specific to SEC14L2 distribution

      • Apply coordinate-based colocalization analysis for interaction studies

      • Use calibration standards to ensure quantitative comparisons

For optimal results, researchers should conduct comparative studies using both conventional and super-resolution microscopy, carefully documenting resolution improvements and potential artifacts. Validation with complementary approaches, such as proximity ligation assays or FRET, can provide additional confidence in the observed nanoscale distribution patterns of SEC14L2.

How can researchers integrate biotin-conjugated SEC14L2 antibody data with multi-omics approaches?

Integrating data from biotin-conjugated SEC14L2 antibody experiments with multi-omics approaches enables a comprehensive understanding of SEC14L2's functional roles in cellular systems. Researchers can implement these methodological strategies:

  • Integrative experimental design:

    • Perform parallel analyses on the same samples (protein, RNA, metabolites)

    • Include time-course measurements to capture dynamic relationships

    • Use consistent experimental conditions across platforms

  • Correlative bioinformatics approaches:

    • Calculate correlation networks between SEC14L2 protein levels and transcriptomic profiles

    • Identify gene sets whose expression correlates with SEC14L2 protein abundance

    • Apply machine learning to discover patterns across multi-modal data

  • Pathway integration strategies:

    • Map SEC14L2 interactions to known metabolic and signaling pathways

    • Overlay protein expression data with metabolomic changes in lipid profiles

    • Integrate with phosphoproteomic data to identify downstream signaling effects

  • Spatial multi-omics coordination:

    • Combine immunohistochemistry with spatial transcriptomics

    • Correlate SEC14L2 localization with locally measured metabolites

    • Integrate with spatial proteomics data to create comprehensive tissue maps

  • Causal relationship validation:

    • Perform perturbation experiments (SEC14L2 modulation) followed by multi-omics analysis

    • Use Bayesian networks to infer causal relationships

    • Validate predictions through targeted experiments

An effective data integration workflow might include:

Data TypeSEC14L2-Related MeasurementIntegration ApproachValidation Method
ProteomicsSEC14L2 quantification with biotin-conjugated antibody immunoprecipitationCorrelation with interactomeCo-immunoprecipitation of predicted interactors
TranscriptomicsRNA-seq following SEC14L2 modulationDifferential expression analysisqRT-PCR of key regulated genes
MetabolomicsLipidomics focusing on tocopherols and sterolsPathway enrichment analysisIsotope tracing of specific lipids
EpigenomicsChIP-seq to identify SEC14L2-associated chromatin regionsMotif analysis and TF predictionReporter assays for identified regions

Researchers should apply appropriate data normalization methods across platforms, account for differences in dynamic range, and use visualization tools that effectively communicate multi-dimensional relationships. Biological replicates are essential for establishing robust correlations across omics layers.

What innovations are emerging in the use of biotin-conjugated SEC14L2 antibodies for in vivo imaging applications?

In vivo imaging with biotin-conjugated SEC14L2 antibodies represents an emerging frontier, with several methodological innovations addressing the unique challenges of this application:

  • Enhanced delivery strategies:

    • Development of bispecific antibody formats with blood-brain barrier penetration motifs

    • Nanoparticle encapsulation for improved biodistribution

    • Site-specific biotin conjugation to maintain antibody pharmacokinetics

  • Sequential targeting approaches:

    • Pretargeting strategies using biotin-conjugated SEC14L2 antibodies followed by streptavidin-conjugated imaging agents

    • Clearable linking systems to reduce background from circulating antibodies

    • Multimodal detection capabilities (PET/fluorescence) with versatile streptavidin conjugates

  • Activatable imaging constructs:

    • Quenched fluorophore designs that activate upon SEC14L2 binding

    • FRET-based reporters for conformational changes associated with SEC14L2 activity

    • Protease-activatable linkers for improved signal-to-background ratios

  • Companion diagnostic applications:

    • Correlation of SEC14L2 expression with treatment response

    • Patient stratification based on quantitative imaging metrics

    • Longitudinal monitoring of SEC14L2-related pathways during therapy

  • Advanced signal processing:

    • Spectral unmixing algorithms to separate specific signal from autofluorescence

    • Pharmacokinetic modeling to optimize imaging timepoints

    • Machine learning approaches for automated lesion detection and quantification

These innovations require careful validation with appropriate controls:

  • Specificity: Comparison with non-specific biotin-IgG of the same isotype

  • Sensitivity: Detection limits established with known SEC14L2 expression models

  • Reproducibility: Consistent quantification across multiple imaging sessions

Researchers should report comprehensive methodology including antibody characterization, conjugation chemistry, imaging parameters, and quantification approaches to enable reproduction and comparison of results across studies. Correlative post-mortem tissue analysis with the same biotin-conjugated antibodies provides important validation of in vivo imaging findings.

What are the key considerations for researchers selecting between biotin-conjugated and unconjugated SEC14L2 antibodies for their studies?

When selecting between biotin-conjugated and unconjugated SEC14L2 antibodies, researchers should conduct a systematic assessment based on their experimental requirements. Key considerations include:

The decision framework should prioritize experimental goals, sample characteristics, and available detection systems. Researchers should document their antibody selection process and validation steps to ensure reproducible and reliable SEC14L2 detection across different experimental contexts.

How might future developments in antibody technology impact SEC14L2 research applications?

Future developments in antibody technology are poised to transform SEC14L2 research through several anticipated innovations:

  • Enhanced specificity technologies:

    • Recombinant antibody engineering targeting specific SEC14L2 epitopes

    • Single-domain antibodies (nanobodies) offering improved access to sterically hindered epitopes

    • CRISPR-based epitope tagging for ultra-specific detection of endogenous SEC14L2

  • Advanced conjugation chemistries:

    • Site-specific biotin conjugation preserving antigen-binding capacity

    • Click chemistry approaches enabling modular detection systems

    • Stimuli-responsive linkers allowing controlled release or activation

  • Integrated functional assessment tools:

    • Activity-sensing antibodies that specifically detect active conformations of SEC14L2

    • Bifunctional antibodies combining SEC14L2 targeting with proximity labeling capabilities

    • Intrabodies for real-time monitoring of SEC14L2 dynamics in living cells

  • Computational antibody design:

    • AI-driven epitope prediction improving antibody specificity

    • Structure-based optimization of binding properties

    • In silico prediction of cross-reactivity with other SEC14 family members

  • Quantitative advancements:

    • Calibrated detection systems with absolute quantification capabilities

    • Internal reference standards for consistent sensitivity across experiments

    • Digital detection platforms enabling single-molecule counting

These developments will likely enhance our understanding of SEC14L2's role in lipid transport, transcriptional regulation, and cholesterol biosynthesis by providing more specific, sensitive, and quantitative tools for its detection and functional characterization. Researchers should stay informed about emerging antibody technologies and consider how they might be applied to address current limitations in SEC14L2 research.

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