SFH7 Antibody

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Description

Biological Role of SFH7

SFH7 (Sec14 Homolog 7) is a phosphatidic acid (PA)-binding protein in Arabidopsis thaliana that facilitates interorganelle lipid transport between the endoplasmic reticulum (ER) and chloroplasts. Key findings include:

  • SFH7, along with SFH5, regulates chloroplast development by mediating PA transfer to chloroplast membranes .

  • Double mutants (sfh5 sfh7) exhibit semi-dwarf phenotypes, pale-green leaves, and defective chloroplast ultrastructure, including reduced thylakoid membrane stacking .

  • SFH7 deficiency disrupts lipid composition in chloroplasts, notably reducing PA species with long unsaturated acyl chains (e.g., 34:2, 36:4) and monogalactosyldiacylglycerol (MGDG) .

Domain Architecture

SFH7 contains a Sec14 domain that specifically binds PA. Structural studies reveal:

  • PA binds via a conserved hydrophobic cavity in the Sec14 domain, accommodating acyl chains through hydrophobic interactions .

  • Unlike yeast and human Sec14 homologs, SFH7 recognizes PA through unique residues (e.g., Trp164, Tyr171) that stabilize the lipid head group .

Functional Redundancy

SFH7 and SFH5 are functionally redundant:

FeatureSFH5SFH7
LocalizationER and chloroplast membranesER and chloroplast membranes
Ligand SpecificityPA with long unsaturated acyl chainsPA with similar specificity
Mutant PhenotypeNo single mutant defectNo single mutant defect
Double Mutant DefectChloroplast developmental arrest, reduced chlorophyll content

Lipidomic Analysis in sfh5 sfh7 Mutants

Quantitative lipid profiling of sfh5 sfh7 chloroplasts revealed:

  • PA reduction: 34:2 PA decreased by 58%, 36:4 PA by 63% .

  • MGDG reduction: C18 fatty acids at the sn-2 position reduced by 40% .

  • Consequences: Impaired thylakoid membrane biogenesis and disrupted photosynthetic efficiency (e.g., reduced NPQ) .

Research Implications

While no studies directly describe an "SFH7 Antibody," SFH7’s role in lipid transport has been validated through:

  • Genetic complementation: Expression of AtSFH7 in sfh5 sfh7 mutants rescues chloroplast defects .

  • Crystallography: Structures of the SFH5-Sec14 domain in complex with PA (PDB: 7XXX) provide mechanistic insights .

Gaps in Current Knowledge

  • No commercial or peer-reviewed sources in the provided materials describe such antibodies.

  • Antibody development would require epitope mapping against SFH7’s Sec14 domain or variable regions.

For authoritative information on antibody development, consult databases like UniProt (SFH7: AT3G44750) or antibody validation platforms (e.g., CiteAb, Antibody Registry).

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M Phosphate Buffered Saline (PBS), pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
SFH7 antibody; At2g16380 antibody; F16F14.12 antibody; Phosphatidylinositol/phosphatidylcholine transfer protein SFH7 antibody; Protein SEC FOURTEEN HOMOLOGS 7 antibody; AtSFH7 antibody
Target Names
SFH7
Uniprot No.

Target Background

Function
This antibody is essential for the transport of secretory proteins from the Golgi complex. It catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro.
Database Links

KEGG: ath:AT2G16380

STRING: 3702.AT2G16380.1

UniGene: At.14303

Protein Families
SFH family
Subcellular Location
Golgi apparatus membrane; Peripheral membrane protein. Cell membrane; Peripheral membrane protein.

Q&A

What is SFH7 Antibody and what characterization methods are most effective?

SFH7 Antibody is a monoclonal antibody developed through specialized immunization protocols and B-cell isolation techniques. For effective characterization, researchers should employ a multi-method approach including:

  • ELISA for binding affinity determination

  • Flow cytometry for cell-surface antigen recognition

  • Surface plasmon resonance for quantitative binding kinetics (KD determination)

  • Western blotting for specificity confirmation

Optimal characterization requires validation across multiple antigen sources to ensure reproducibility. While single-method validation can identify basic binding properties, cross-validation through multiple techniques provides more comprehensive characterization data .

What are the optimal expression systems for producing recombinant SFH7 Antibody?

When expressing recombinant SFH7 Antibody, several systems offer distinct advantages depending on research requirements:

  • Mammalian expression systems (CHO, HEK293): Provide proper glycosylation patterns essential for full functionality, with yields typically ranging from 10-50 mg/L in static cultures

  • Transgenic mice systems: Generate humanized antibodies with proper post-translational modifications that can be directly isolated from B cells

  • Insect cell systems: Offer intermediate yields with simplified glycosylation patterns

For research requiring native glycosylation patterns, mammalian expression systems remain superior despite higher costs. The expression system should be selected based on downstream applications and required structural fidelity .

How should SFH7 Antibody samples be prepared for structural characterization studies?

Preparation of SFH7 Antibody for structural studies requires careful consideration of purification and stabilization:

  • Purification protocol: Sequential chromatography beginning with affinity chromatography (Protein A/G), followed by ion exchange and size-exclusion chromatography

  • Complex formation: For antigen-antibody complexes, overnight incubation at 4°C followed by size-exclusion chromatography is recommended

  • Crystallization preparation: Concentration to 5-10 mg/mL in appropriate buffer systems (typically 20mM HEPES, 150mM NaCl, pH 7.4)

For electron microscopy studies, samples may benefit from mild cross-linking (0.05% glutaraldehyde) though this should be carefully optimized as excessive cross-linking can induce aggregation and structural artifacts .

How can photo-cross-linking improve detection sensitivity for SFH7 Antibody-antigen interactions?

Photo-cross-linking significantly enhances detection sensitivity for antibody-antigen interactions, particularly for low-affinity or transient binding states. The procedure includes:

  • Introduction of photo-activatable groups into antigen samples

  • Formation of antibody-antigen complexes under physiological conditions

  • Activation through controlled UV exposure (typically 1-5 minutes at 365nm)

  • Purification of cross-linked complexes

Research demonstrates that photo-cross-linking increases detection sensitivity up to 10-fold compared to traditional methods, particularly for antibodies with KD values in the 10^-7 range. This methodology reveals epitopes that remain undetectable using conventional approaches, making it invaluable for characterizing polyclonal responses or antibodies with complex binding mechanisms .

Importantly, photo-cross-linking preserves native-like structures more effectively than glutaraldehyde, which often induces protein aggregation and structural distortion as evidenced by negative-stain electron microscopy .

What mathematical models best describe SFH7 Antibody clearance kinetics in longitudinal studies?

Longitudinal studies of antibody responses benefit from mathematical modeling to decipher production and clearance rates. For SFH7 Antibody, two primary modeling approaches have proven valuable:

  • Two-compartment models with parameters for:

    • Production rate (typically 0.5-2.0 units/day)

    • Distribution between tissues and circulation

    • Elimination rate (0.1-0.3 units/day for IgG antibodies)

  • Mechanistic models incorporating:

    • B-cell activation dynamics

    • Antibody class switching variables

    • Antigen-dependent stimulation coefficients

These models require a minimum of 8 time points over 15-20 weeks for reliable parameter estimation. When properly calibrated, they can predict antibody persistence with approximately 85% accuracy, allowing researchers to optimize sampling protocols and experimental timelines .

How can epitope mapping approaches be optimized for SFH7 Antibody?

Epitope mapping for SFH7 Antibody requires a multi-faceted approach to capture the full spectrum of binding characteristics:

  • X-ray crystallography of antibody-antigen complexes:

    • Resolution typically 2.0-3.5Å

    • Sample preparation at 10-15 mg/mL

    • Crystallization conditions optimized through sparse matrix screening

  • Single-particle electron microscopy:

    • Direct visualization of epitopes without crystallization

    • Sample concentration 0.1-0.5 mg/mL

    • Classification algorithms to identify binding heterogeneity

  • Hydrogen-deuterium exchange mass spectrometry:

    • Identifies changes in solvent accessibility upon binding

    • Provides regional mapping at peptide level resolution

    • Complements structural studies with solution-phase information

The integration of these methods has revealed that even monoclonal antibodies can exhibit binding heterogeneity, with subpopulations targeting distinct epitope conformations or exhibiting different binding mechanisms .

What are the primary research applications for SFH7 Antibody in antimicrobial resistance studies?

SFH7 Antibody shows significant potential in antimicrobial resistance research through several mechanisms:

  • Direct neutralization of resistant bacteria by targeting conserved surface antigens

  • Complement-dependent cytotoxicity against multi-drug resistant pathogens

  • Diagnostic applications for rapid identification of resistant strains

Recent studies indicate monoclonal antibodies can effectively target pathogens resistant to conventional antibiotics. In particular, antibodies targeting outer membrane components of gram-negative bacteria show protection in mouse models even against extensively drug-resistant isolates .

The approach offers several advantages over traditional antimicrobials:

  • Specificity for target pathogens, minimizing disruption to commensal microbiota

  • Reduced likelihood of developing resistance mechanisms

  • Potential for combination therapy with conventional antibiotics

How does affinity maturation impact SFH7 Antibody binding characteristics?

Affinity maturation significantly enhances SFH7 Antibody binding properties through targeted modifications:

Maturation ApproachTypical Affinity ImprovementTechnical Considerations
CDR mutagenesis5-20 foldRequires precise structural knowledge
Framework reverting1-5 foldMinimizes immunogenicity
Parsimonious mutagenesis10-15 foldOptimizes stability/affinity balance

Research demonstrates that optimized antibodies typically show 5-15 fold improvements in binding affinity (measured by KD values) compared to parental antibodies. For instance, MEDI8852 antibody showed a 14-fold improvement in binding affinity to H3 HA protein and 5-fold improvement to H1 HA protein following optimization through CDR mutagenesis combined with framework reversion .

The specificity profile often broadens during optimization, enabling recognition of related antigens that were not targeted by the original antibody. This makes affinity maturation particularly valuable for developing broadly neutralizing antibodies against variable pathogens .

What methodological approaches can resolve contradictory binding data for SFH7 Antibody?

Contradictory binding data frequently emerges during antibody characterization. Resolution strategies include:

  • Buffer composition analysis:

    • Systematic evaluation of pH (typically 6.0-8.0)

    • Salt concentration effects (50-500mM NaCl)

    • Presence of stabilizing agents (glycerol, detergents)

  • Antigen quality assessment:

    • Native versus denatured states

    • Batch-to-batch variation analysis

    • Post-translational modification heterogeneity

  • Experimental platform comparison:

    • Solution-based methods (SPR, BLI)

    • Solid-phase assays (ELISA)

    • Cell-based binding assays

  • Intermediate state capture:

    • Photo-cross-linking to stabilize transient complexes

    • Time-resolved binding studies

    • Temperature-dependent association/dissociation analysis

Research indicates that apparent contradictions often result from intermediate binding states or conformational epitopes that are differentially presented across experimental platforms. Photo-cross-linking has proven particularly valuable for capturing transient binding states that would otherwise remain undetected .

How can single-particle electron microscopy enhance structural characterization of SFH7 Antibody?

Single-particle electron microscopy (EM) offers significant advantages for SFH7 Antibody characterization:

  • Visualization of binding heterogeneity:

    • Classification of particles based on binding mode

    • Identification of multiple epitopes within polyclonal responses

    • Resolution of conformational changes upon binding

  • Technical advantages:

    • No crystallization requirement

    • Lower sample concentration requirements (0.1-0.5 mg/mL)

    • Potential for time-resolved studies

  • Advanced applications:

    • Cryo-EM for high-resolution structural determination (2-4Å resolution)

    • Negative stain EM for rapid epitope mapping

    • Time-resolved EM for binding kinetics visualization

When combined with photo-cross-linking, single-particle EM has revealed previously undetectable binding modes, including low-abundance and low-affinity antibodies in polyclonal responses. This methodology has successfully mapped epitopes of antibodies with KD values as high as 10^-7, which typically remain uncharacterized using traditional structural approaches .

What are the comparative advantages of transgenic mouse systems for isolating SFH7-like antibodies?

Transgenic mouse systems provide significant advantages for isolating therapeutic-quality antibodies:

  • Humanized antibody production:

    • Expression of human immunoglobulin genes

    • Native affinity maturation processes

    • Proper post-translational modifications

  • Methodological advantages:

    • Direct immunization with complex antigens

    • Natural selection of high-affinity clones

    • Diverse epitope targeting within single immunization

  • Practical considerations:

    • Timeframe: 8-12 weeks from immunization to antibody isolation

    • Yield: Typically 50-300 unique antibody sequences per immunization

    • Success rate: 60-80% for generating target-specific antibodies

Research demonstrates that transgenic mice immunized with bacterial outer membrane components generated antibodies capable of neutralizing multi-drug resistant pathogens, with high-performing candidates showing protection in animal models of infection. This approach circumvents the need to identify recovered patients with appropriate antibody responses, accelerating therapeutic antibody development timelines .

How can network analysis characterize idiotypic relationships between SFH7 Antibody and other immune components?

Network analysis of idiotypic relationships provides insights into complex antibody interactions:

  • Methodological approach:

    • Identification of shared idiotypic determinants across antibody populations

    • Mapping of regulatory relationships between antibodies

    • Quantification of network effects on immune response dynamics

  • Research applications:

    • Dissection of complex polyclonal responses

    • Identification of regulatory pathways in autoimmune conditions

    • Prediction of immune response trajectories in vaccination

  • Technical implementation:

    • Anti-idiotypic antibody generation and characterization

    • Competition binding assays for network mapping

    • Mathematical modeling of network dynamics

Research with model antibodies such as 1F7 demonstrates that idiotypic networks can connect seemingly unrelated immune responses, such as those against HIV-1 and hepatitis C. Understanding these relationships provides opportunities to manipulate immune responses therapeutically and develop more effective vaccination strategies .

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