SLC3A2 Antibody, FITC conjugated

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Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
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Synonyms
SLC3A2; MDU1; 4F2 cell-surface antigen heavy chain; 4F2hc; 4F2 heavy chain antigen; Lymphocyte activation antigen 4F2 large subunit; Solute carrier family 3 member 2; CD antigen CD98
Target Names
Uniprot No.

Target Background

Function
SLC3A2 is a component of several heterodimeric complexes involved in amino acid transport. The precise substrate specificity of these complexes depends on the other subunit in the heterodimer. These complexes function as amino acid exchangers. The SLC3A2 homodimer functions as a sodium-independent, high-affinity transporter mediating the uptake of large neutral amino acids such as phenylalanine, tyrosine, L-DOPA, leucine, histidine, methionine, and tryptophan. The heterodimer formed by SLC3A2 and SLC7A6 or SLC3A2 and SLC7A7 mediates the uptake of dibasic amino acids. The heterodimer with SLC7A5/LAT1 mediates the transport of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. The heterodimer with SLC7A5/LAT1 is also involved in the uptake of toxic methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes. Furthermore, the heterodimer with SLC7A5/LAT1 plays a role in the uptake of leucine. When associated with LAPTM4B, the heterodimer with SLC7A5/LAT1 is recruited to lysosomes to promote leucine uptake into these organelles, thereby mediating mTORC1 activation. The heterodimer with SLC7A5/LAT1 may also play a role in the transport of L-DOPA across the blood-brain barrier. The heterodimer formed by SLC3A2 and SLC7A5/LAT1 or SLC3A2 and SLC7A8/LAT2 is involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. In conjunction with ICAM1, SLC3A2 regulates the transport activity of SLC7A8/LAT2 in polarized intestinal cells by generating and delivering intracellular signals. SLC3A2 is required for targeting of SLC7A5/LAT1 and SLC7A8/LAT2 to the plasma membrane and for channel activity. It also plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. SLC3A2 may mediate blood-to-retina L-leucine transport across the inner blood-retinal barrier. In cases of hepatitis C virus/HCV infection, the complex formed by SLC3A2 and SLC7A5/LAT1 contributes to HCV pathogenesis by facilitating viral entry into host cells and increasing L-leucine uptake-mediated mTORC1 signaling activation.
Gene References Into Functions
  1. Data suggest that SLC3A2-NRG1 should be considered a therapeutic target for patients with invasive mucinous adenocarcinoma of the lung (IMA). PMID: 27626312
  2. These results demonstrate a novel fundamental role of LAT1 to support the protein expression of 4F2hc via a chaperone-like function in chorionic trophoblasts. PMID: 28320871
  3. SLC3A2 is upregulated in osteosarcoma and plays a crucial role in tumor growth. PMID: 28350098
  4. Expression levels of CD98 and beta1-integrin-A (the activated form of beta1-integrin) were significantly increased in hepatocellular carcinoma (HCC) tissues relative to those of normal liver tissues. PMID: 27834933
  5. Data suggest that increased CD98 (4F2hc) expression plays an essential role in tumor aggressiveness and metastasis. PMID: 28179310
  6. Study demonstrated that the mRNA expression levels of the two system xc- subunits, SLC7A11 and SLC3A2, in peripheral white blood cells are lowered in patients with schizophrenia than healthy individuals PMID: 26540405
  7. ubiquitylation and the resulting downregulation of CD98 can limit cell proliferation and clonal expansion. PMID: 26493331
  8. exposure to diesel exhaust particle extract induces functional overexpression of the amino acid transporter LAT1/CD98hc in lung cells PMID: 26621329
  9. The detergent-induced stabilization of the purified human 4F2hc-LAT2 complex presented here paves the way towards its crystallization and structure determination at high-resolution PMID: 25299125
  10. HSV-1 recruited cellular fusion regulatory proteins CD98hc and beta1 integrin to the nuclear membrane for viral de-envelopment fusion. PMID: 25995262
  11. CD98-mediated phosphorylation of focal adhesion kinase may facilitate the assembly of pro-tumorigenic signaling complexes and the subsequent amplification of a positive feedback loop of CD98/integrins/FAK/RhoA/ROCK. PMID: 26172215
  12. data suggest that genetic variation of rs1059292 in CD98 gene may affect clinical outcome of NSCLC in Chinese population PMID: 24782339
  13. Studied and identified the eukaryotic protein CD98hc as a partner for Brucella T4SS subunit VirB2. PMID: 25505297
  14. CAP-D3 down-regulates transcription of genes that encode amino acid transporters (SLC7A5 and SLC3A2) to promote bacterial autophagy by colon epithelial cells. PMID: 25701737
  15. High CD98hc expression is associated with non-small cell lung cancer. PMID: 25084765
  16. observed a correlation between less differentiated and more aggressive clear cell renal cell cancer and CD98hc expression; found that CD98hc is not only a descriptive marker for aggressive cancers, but bears a major regulatory role of malignant cell function PMID: 24359579
  17. We detected elevated levels of antipeptide responses, but failed to detect reactivity against native CD98-expressing HeLa cells in sera of immunized mice. PMID: 24484217
  18. The extracellular domain of 4F2hc interacts with LAT2, almost completely covering its extracellular face and stabilizing the solubilized transporter. PMID: 24516142
  19. heteromerization of y+LAT1 and 4F2hc within the cell is not disrupted by any of the tested LPI mutations PMID: 23940088
  20. Although extracellular galectin-3 accumulates due to the decrease in MMP-2 activity, galectin-3 signaling events are blocked due to an impaired interaction with 4F2hc, inducing an increased degradation of beta-catenin. PMID: 23651923
  21. The interaction of galectin 3 and CD98 can induce Eos to release chemical mediators that contributes to the initiation of the intestinal inflammation. PMID: 23272174
  22. These findings demonstrate the importance of the extracellular loop of CD98 in the innate host defense response to intestinal infection by attaching and effacing (A/E) pathogens. PMID: 23297381
  23. [REVIEW] Rapid proliferation and resulting clonal expansion are dependent on CD98, a protein whose well-conserved orthologs appear restricted to vertebrates. PMID: 22499670
  24. Strategies targeting transgenic CD98 heavy-chain demonstrate clinical application for treating type 1 diabetes and other T cell-mediated autoimmune diseases. PMID: 22291182
  25. study revealed that LAT1 and CD98 expression are positively correlated with breast cancer proliferation and negatively correlated with ER and PgR status; show that LAT1 and CD98 expression are prognostic factors in triple negative breast cancer PMID: 22077314
  26. Results suggest that 4F2hc may play a significant role in tumor progression, hypoxic conditions and poor outcome in patients with pulmonary NE tumors. PMID: 21750865
  27. Compared with the adult cerebral cortex, mRNAs encoding OATP1A2, OATP1C1, OATP3A1 variant 2, OATP4A1, LAT2 and CD98 were reduced in fetal cortex at different gestational ages, whilst mRNAs encoding MCT8, MCT10, OATP3A1 variant 1 and LAT1 were similar. PMID: 21486766
  28. The integrin-binding domain of the CD98 heavy chain transgene is required for antigen-driven T cell clonal expansion in the pathogenesis of an autoimmune disease such as experimental type 1 diabetes. mellitus. PMID: 21670318
  29. Folding seems to be directed by the initial formation of hydrophobic clusters within the first strands of the beta-barrel of domain A followed by additional hydrophobic interactions in domain C. PMID: 21352957
  30. CD98hc is involved in integrin trafficking and by consequence, in keratinocyte adhesion and differentiation. PMID: 21282044
  31. CD98 expression was associated with the grade of malignancy and cell cycle control, and was useful for predicting poor outcome in thymic epithelial tumors PMID: 20811665
  32. High expression of 4F2HC is associated with high-grade gliomas. PMID: 20091333
  33. High CD98 expression is associated with non-small-cell lung cancer with lymph node metastases. PMID: 19777189
  34. CD98 expression is down-regulated in thyroid papillary carcinoma; this may relate to the better prognosis associated with many of these tumours. PMID: 19922591
  35. Data show that, in vitro, under physiological conditions, CD98 is constitutively associated with beta1 integrins regardless of activation status. PMID: 12181350
  36. the interaction of CD98/LAT2 with ICAM-1, found to be expressed to the basolateral domain, and the potential of such interaction on intracellular signal activation in Caco2-BBE cell monolayers PMID: 12716892
  37. Involved in process of cell fusion necessary for syncytiotrophoblast formation. During this physiologically important event, amino acid transport activity is also regulated through expression of this membrane protein. PMID: 12740424
  38. The heavy chain of the cell surface antigen 4F2 is induced by lysophosphatidylcholine, oxLDL and many oxidation products. It mediates increased cytokine production by endothelial cells. PMID: 15178563
  39. results explain how high expression of CD98hc antigen in human cancers contributes to transformation PMID: 15485886
  40. iRNA-induced reduction in CD98 expression suppresses cell fusion during syncytialization of placental cell line. PMID: 15556631
  41. CD98hc is an integrin-associated protein that mediates integrin-dependent signals, which promote tumorigenesis. PMID: 15625115
  42. CD98 is a scaffolding protein that interacts with basolaterally expressed amino acid transporters and beta1 integrins and can alter amino acid transport and cell adhesion, migration and branching morphogenesis PMID: 15713750
  43. The 15 carboxy-terminal residues of 4F2hc are required for the transport function of the heterodimer. Mutation of the conserved residue leucine 523 to glutamine in the carboxy terminus reduced the Vmax of arginine and leucine uptake. PMID: 16785209
  44. Results demonstrated that a reduction of Sp1 or NF-kappaB expression reduced CD98 protein expression. PMID: 17023546
  45. data suggest N-glycosylation of CD98 & subsequent interaction with galectin 3 is critical for aspects of placental cell biology, & provides rationale for observation that in mice truncation of CD98hc extracellular domain leads to early embryonic lethality PMID: 17451431
  46. CD98hc is a bridge between multidrug resistance phenotype and tumor metastasis PMID: 17611393
  47. The structure of human 4F2HC ectodomain provides a model for homodimerization and electrostatic interaction with plasma membrane. PMID: 17724034
  48. The transmembrane domain of CD98 heavy chain has an essential role in the stimulation of alpha(v)beta(3) integrin for cell adhesion and motility. PMID: 18032696
  49. Inhibition of system L (LAT1/CD98hc) reduces the growth of cultured human breast cancer cells. PMID: 18813831
  50. CD98 expression in primary and metastatic neoplasms is reported. PMID: 19018776

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Database Links

HGNC: 11026

OMIM: 158070

KEGG: hsa:6520

STRING: 9606.ENSP00000367123

UniGene: Hs.502769

Protein Families
SLC3A transporter family
Subcellular Location
Apical cell membrane. Cell membrane; Single-pass type II membrane protein. Cell junction. Lysosome membrane. Melanosome.
Tissue Specificity
Expressed ubiquitously in all tissues tested with highest levels detected in kidney, placenta and testis and weakest level in thymus. During gestation, expression in the placenta was significantly stronger at full-term than at the mid-trimester stage. Exp

Q&A

What is SLC3A2 and why is it an important research target?

SLC3A2, also known as CD98 or 4F2hc, is a type II transmembrane glycoprotein that forms heterodimeric amino acid transporters by associating with one of several light chains, most notably SLC7A11 (xCT). The SLC3A2/SLC7A11 complex functions as a cystine/glutamate antiporter that imports cystine into cells, which is crucial for glutathione synthesis and cellular redox homeostasis .

SLC3A2 has garnered significant research interest because:

  • It plays a key role in disulfidoptosis, a novel form of cell death characterized by protein disulfide reduction that leads to protein aggregation and subsequent cell death

  • Recent studies have identified high expression of SLC3A2 in nasopharyngeal carcinoma (NPC) and head and neck squamous cell carcinoma (HNSC), correlating with poor prognosis

  • SLC3A2 has been linked to tumor microenvironment immunosuppression, with high expression associated with decreased immune cell infiltration

  • It represents a promising biomarker for predicting adverse outcomes in cancer patients

SLC3A2 research extends beyond cancer biology to amino acid transport regulation, cell growth control, and metabolic pathways, making it relevant for multiple research disciplines.

What are the primary applications for FITC-conjugated SLC3A2 antibodies in research?

FITC-conjugated SLC3A2 antibodies are valuable research tools with several key applications:

  • Flow cytometry: Primary application for cell surface SLC3A2 detection and quantification, allowing for multiparameter analysis with other markers

  • Immunofluorescence microscopy: Visualization of SLC3A2 distribution in tissue sections or cultured cells

  • Cell sorting: Isolation of SLC3A2-expressing cell populations for downstream applications

  • Immune infiltration analysis: Assessment of SLC3A2 expression in relation to tumor-infiltrating immune cells

  • Prognostic biomarker studies: Evaluation of SLC3A2 expression levels in patient samples for correlation with clinical outcomes

Several suppliers provide FITC-conjugated anti-SLC3A2 antibodies specifically validated for flow cytometry, including antibodies-online, Creative Diagnostics, and others listed in the Biocompare database .

How should I optimize sample preparation for flow cytometry with FITC-conjugated SLC3A2 antibodies?

Optimal sample preparation is crucial for accurate SLC3A2 detection using FITC-conjugated antibodies:

  • Cell preparation:

    • For suspension cells: Harvest during logarithmic growth phase and wash twice with cold PBS containing 1% BSA

    • For adherent cells: Use enzymatic (trypsin/EDTA) or non-enzymatic cell dissociation methods, ensuring minimal damage to surface epitopes

    • Maintain cell concentration at 1×10^6 cells/100μL for consistent staining

  • Fixation considerations:

    • If intracellular staining is required alongside SLC3A2, use 4% paraformaldehyde for 10-15 minutes at room temperature

    • For surface staining only, fixation can be performed after antibody incubation

    • Some epitopes may be fixation-sensitive; compare fixed vs. unfixed samples if signal is weak

  • Blocking and staining:

    • Block with 5-10% normal serum from the same species as the secondary antibody for 30 minutes

    • Use titrated antibody concentrations (typically starting at 1:100 dilution)

    • Incubate for 30-45 minutes at 4°C in the dark to preserve FITC fluorescence

    • Include appropriate isotype controls to assess non-specific binding

  • Multicolor panel design:

    • FITC emits in the green spectrum (peak ~520nm), so avoid fluorophores with significant spectral overlap

    • Include compensation controls when designing multicolor panels

    • When studying the relationship between SLC3A2 and immune cells, consider including markers for T cells, B cells, and CD8+ T cells, as SLC3A2 expression has been shown to inversely correlate with these populations

What are typical expression patterns of SLC3A2 in different cell types and cancers?

SLC3A2 expression varies across cell types and is frequently dysregulated in cancer:

Normal tissues and cells:

  • Moderately expressed in rapidly proliferating epithelial cells

  • Low expression in most differentiated tissues

  • Expressed in activated lymphocytes during immune responses

  • Found in cells with high metabolic demands requiring enhanced amino acid transport

Cancer cells and tissues:

  • Significantly upregulated in nasopharyngeal carcinoma and head and neck squamous cell carcinoma

  • Expression correlates with cancer progression and worse patient outcomes

  • Shows inverse correlation with immune cell infiltration in the tumor microenvironment

  • Expression is negatively associated with immuneScore and estimateScore metrics in cancer analysis

Expression pattern characteristics:

  • Predominantly cell membrane localization

  • Heterogeneous expression within tumor samples

  • Often co-expressed with SLC7A11 (xCT) as functional heterodimers

  • Expression can be induced under stress conditions, particularly oxidative stress

When analyzing SLC3A2 expression, researchers should consider its potential functional relationship with the tumor immune microenvironment, as higher SLC3A2 expression has been linked to an immunosuppressive phenotype characterized by decreased cytotoxic cells, T cells, B cells, and CD8+ T cells .

What controls should I include when using FITC-conjugated SLC3A2 antibodies?

Proper experimental controls are essential for rigorous research with FITC-conjugated SLC3A2 antibodies:

Essential controls:

  • Isotype control: Use a FITC-conjugated antibody of the same isotype, host species, and concentration as your SLC3A2 antibody to assess non-specific binding and set gating thresholds

  • Negative cell population: Include cell types known not to express SLC3A2 or use siRNA knockdown cells to validate specificity

  • Positive cell population: Use cell lines with confirmed SLC3A2 expression (e.g., certain cancer cell lines) as positive controls

  • Unstained cells: To establish autofluorescence baseline

  • Single-stained controls: When performing multicolor flow cytometry, include single-stained samples for each fluorophore to set up compensation

Advanced controls:

  • Blocking peptide control: Pre-incubate antibody with SLC3A2 peptide to confirm binding specificity

  • Alternate clone validation: Compare results with a different antibody clone targeting a different SLC3A2 epitope

  • Western blot correlation: Confirm SLC3A2 protein expression in the same samples via Western blot

  • RT-qPCR correlation: Compare protein expression patterns with mRNA expression

Control samples should be processed identically to experimental samples to ensure valid comparisons. Documentation of all controls is essential for publication and reproducibility purposes.

How can I develop multi-parameter flow cytometry panels incorporating SLC3A2-FITC for tumor microenvironment analysis?

Developing effective multi-parameter flow cytometry panels with SLC3A2-FITC requires careful consideration of panel design, fluorophore selection, and optimization:

Panel design strategy:

  • Core markers selection:

    • Include SLC3A2-FITC as primary marker of interest

    • Add markers for major immune cell populations (CD3, CD4, CD8, CD19, CD56)

    • Consider including markers inversely correlated with SLC3A2 (cytotoxic cells, T cells, B cells, CD8+ T cells)

    • Include relevant checkpoint molecules (CD96, CD244, BTLA, PDCD1) that show correlation with SLC3A2 expression

  • Fluorophore assignment table:

TargetRecommended FluorophoreRationale
SLC3A2FITCPrimary marker in green channel
CD3APCBright fluorophore with minimal spillover into FITC
CD8PE-Cy7Allows distinction from CD4+ cells
CD4BV421Good separation from FITC channel
PD-1 (PDCD1)PEImportant checkpoint molecule
CD19BV510B cell marker in distinct channel
Live/DeadFar Red dyeMinimal spectral overlap with analysis markers
  • Optimization considerations:

    • Titrate each antibody individually to determine optimal concentration

    • Run fluorescence-minus-one (FMO) controls to set accurate gates

    • Test antibody cocktail stability (prepare fresh vs. pre-mixed)

    • Optimize sample preparation protocol for concurrent detection of surface and intracellular markers if needed

  • Analysis approach:

    • Use bivariate plots to examine relationships between SLC3A2 and immune cell markers

    • Apply dimensionality reduction techniques (tSNE, UMAP) for population identification

    • Consider examining SLC3A2 expression intensity in relation to immune cell distribution

    • Correlate flow cytometry data with clinical outcomes or experimental conditions

This approach allows for comprehensive assessment of SLC3A2's relationship with immune cells in the tumor microenvironment, particularly important given its reported negative correlation with immune cell infiltration and potential role in immunosuppression .

What methodological approaches can resolve contradictory results when assessing SLC3A2 expression and function?

When faced with contradictory results in SLC3A2 research, a systematic troubleshooting approach can help identify sources of variability:

Antibody validation strategy:

  • Cross-validate with multiple detection methods:

    • Flow cytometry with different antibody clones

    • Western blot for total protein expression

    • RT-qPCR for mRNA expression

    • Immunofluorescence for localization patterns

    • Mass spectrometry for unbiased protein identification

  • Epitope mapping and accessibility analysis:

    • Determine if contradictory results stem from different epitope recognition

    • Assess if sample preparation affects epitope accessibility

    • Consider native vs. denatured protein conformations

Biological variability assessment:

  • Cell type and context specificity:

    • Different cell types may show variable SLC3A2 expression patterns

    • Microenvironmental factors may regulate expression (hypoxia, nutrient availability)

    • Cell density and confluency can affect surface protein expression

  • Functional partner analysis:

    • As SLC3A2 functions with SLC7A11/xCT, assess both proteins simultaneously

    • Evaluate heterodimer formation under different conditions

    • Consider post-translational modifications affecting interactions

Experimental design recommendations:

  • Standardize protocols across experiments

  • Include positive and negative controls in each experiment

  • Document all experimental conditions comprehensively

  • Use multiple biological and technical replicates

  • Consider kinetic analyses rather than single timepoints

When investigating SLC3A2's role in disulfidoptosis and tumor progression, contradictions may arise from the complex interplay between SLC3A2 expression, immune cell infiltration, and cancer progression. Recent research suggests that while SLC3A2 overexpression correlates with poor prognosis in nasopharyngeal carcinoma and head and neck squamous cell carcinoma, its relationship with immune cells is complex and context-dependent . A methodical approach examining multiple parameters simultaneously is recommended to resolve apparently contradictory findings.

How can I quantitatively assess SLC3A2's relationship with immune infiltration using FITC-conjugated antibodies?

To quantitatively evaluate the relationship between SLC3A2 expression and immune infiltration, implement this comprehensive analytical workflow:

Sample preparation and staining protocol:

  • Tissue processing:

    • Fresh samples: Process within 1-2 hours of collection

    • FFPE samples: Optimize antigen retrieval for SLC3A2 and immune markers

    • Single-cell suspensions: Ensure gentle digestion protocols to preserve surface epitopes

  • Multi-parameter staining approach:

    • Panel design: Include SLC3A2-FITC with markers for key immune populations

    • Sequential staining: Consider tyramide signal amplification for low-abundance markers

    • Multiplexed imaging: For spatial relationship assessment

Quantitative analysis methods:

  • Flow cytometry quantification:

    • Express SLC3A2 as median fluorescence intensity (MFI)

    • Calculate percentage of SLC3A2+ cells within each immune population

    • Use histogram overlays to visualize expression distribution shifts

    • Apply bivariate analysis to correlate SLC3A2 MFI with immune marker expression

  • Correlation analysis framework:

Analysis TypeMethodOutput Metrics
Flow cytometrySpearman/Pearson correlationr value between SLC3A2 MFI and immune cell percentages
Imaging cytometrySpatial analysis algorithmsProximity scores, colocalization coefficients
Transcriptomic correlationGene set enrichment analysisEnrichment scores, p-values
  • Visualization and statistical approach:

    • Generate correlation heatmaps between SLC3A2 and immune markers

    • Create scatter plots with regression lines for key correlations

    • Perform multivariate analysis to account for confounding factors

    • Apply appropriate statistical tests with multiple testing correction

Research has demonstrated a negative correlation between SLC3A2 expression and immune cell infiltration, particularly with cytotoxic cells, T cells, B cells, and CD8+ T cells . Additionally, SLC3A2 expression inversely correlates with immunosuppressive checkpoints such as CD96, CD244, BTLA, and PDCD1 . These findings suggest that SLC3A2 may contribute to an immunosuppressive tumor microenvironment, making quantitative assessment of these relationships particularly valuable for understanding tumor immunity and potential therapeutic approaches.

What are the best practices for analyzing SLC3A2 expression in relation to disulfidoptosis pathways?

Disulfidoptosis is a recently characterized cell death mechanism involving protein disulfide reduction, and SLC3A2 plays a critical role through its partnership with SLC7A11/xCT. To effectively analyze SLC3A2 in this context:

Experimental design considerations:

  • Pathway component analysis:

    • Beyond SLC3A2, include assessment of SLC7A11/xCT (partner protein)

    • Measure glutathione (GSH) levels and GSH/GSSG ratio

    • Analyze expression of GPX4 and GCLC (glutamate-cysteine ligase)

    • Evaluate ferroptosis markers as a comparison for specificity

  • Disulfidoptosis induction methods:

    • Cystine deprivation conditions

    • System xc- inhibition (e.g., erastin)

    • Direct disulfide reduction agents

    • Physiological inducers relevant to cancer microenvironment

Analytical approach:

  • Protein analysis workflow:

    • Flow cytometry: Quantify SLC3A2-FITC in live vs. dying cells

    • Western blot: Assess protein aggregation patterns

    • Immunoprecipitation: Evaluate SLC3A2-SLC7A11 interaction under stress

    • Native PAGE: Examine protein complex formation and stability

  • Functional assays:

    • Live-cell imaging with disulfide-sensitive probes

    • Cell death quantification under disulfidoptosis-inducing conditions

    • Rescue experiments using cysteine supplementation

    • Genetic manipulation of SLC3A2 expression (knockdown/overexpression)

  • Data integration strategy:

    • Correlate SLC3A2 expression levels with disulfidoptosis sensitivity

    • Compare cell death patterns between SLC3A2-high and SLC3A2-low populations

    • Assess the impact of microenvironmental factors on SLC3A2-mediated disulfidoptosis

    • Evaluate potential therapeutic implications in cancer contexts

Research has identified SLC3A2 as a key component in disulfidoptosis-related processes, particularly in cancer contexts where its overexpression correlates with poor prognosis in nasopharyngeal carcinoma and head and neck squamous cell carcinoma . The relationship between SLC3A2 expression, disulfidoptosis pathways, and tumor progression represents a promising area for therapeutic development and prognostic assessment.

How should I interpret SLC3A2 expression data in the context of cancer prognosis research?

Interpreting SLC3A2 expression data in cancer prognosis research requires careful consideration of multiple factors:

Data interpretation framework:

  • Expression level analysis:

    • Flow cytometry: Compare median fluorescence intensity across patient cohorts

    • Tissue staining: Utilize standardized H-score or digital image quantification

    • Establish appropriate cutoff values for "high" vs. "low" expression

    • Consider both percentage of positive cells and intensity of staining

  • Prognostic correlation approach:

    • Kaplan-Meier survival analysis comparing SLC3A2-high vs. SLC3A2-low groups

    • Cox proportional hazards models adjusting for clinical confounders

    • ROC curve analysis to assess predictive performance

    • Time-dependent AUC for dynamic predictive capability

  • Multivariate contextual analysis:

    • Integrate with established prognostic factors

    • Consider tumor type specificity (particularly NPC and HNSC)

    • Evaluate in context of treatment modalities

    • Assess in relation to molecular subtypes

Research findings interpretation:

Recent studies have identified significant correlations between SLC3A2 expression and cancer prognosis:

  • High SLC3A2 expression is associated with poor prognosis in nasopharyngeal carcinoma and head and neck squamous cell carcinoma

  • SLC3A2 expression negatively correlates with immune cell infiltration, suggesting an immunosuppressive microenvironment in tumors with high SLC3A2 expression

  • The prognostic impact appears to be related to both direct effects on tumor cells and indirect effects on the tumor microenvironment

  • SLC3A2's role in disulfidoptosis may explain its impact on cancer cell survival and therapy resistance

Recommendation for comprehensive interpretation:

When analyzing SLC3A2 expression data in cancer cohorts, consider both direct expression metrics and contextual factors like immune infiltration patterns, treatment history, and molecular subtyping. The integration of multiple data dimensions will likely provide more robust prognostic information than SLC3A2 expression alone.

What approaches effectively optimize FITC-conjugated SLC3A2 antibody performance in different experimental systems?

Optimizing FITC-conjugated SLC3A2 antibody performance requires systematic approach tailored to specific experimental systems:

Cell culture optimization:

  • Harvest timing considerations:

    • Collect cells at consistent confluence (70-80% recommended)

    • Synchronize cell cycles when comparing different conditions

    • Standardize time points post-treatment in stimulation experiments

  • Gentle dissociation protocol:

    • Use non-enzymatic dissociation methods when possible

    • If trypsin is required, minimize exposure time

    • Include enzyme inhibitors and keep cells cold during processing

    • Allow 1-2 hours recovery time in suspension before staining

Staining protocol optimization:

  • Titration approach:

    • Perform serial dilutions (typically 1:50 to 1:800)

    • Calculate staining index for each concentration

    • Select concentration that maximizes signal-to-noise ratio

    • Validate optimal concentration across different sample types

  • Buffer composition considerations:

    • Standard: PBS with 1-2% BSA or FBS

    • Enhanced: Add 0.1% sodium azide to prevent internalization

    • For difficult epitopes: Try different detergents (0.1% saponin, 0.1% Triton X-100)

    • Adjust pH if epitope recognition is pH-sensitive

  • Incubation parameters:

    • Temperature: 4°C (standard) vs. room temperature (may increase binding)

    • Time: 30 minutes (standard) to overnight (for weak signals)

    • Agitation: Gentle continuous mixing improves uniformity

Instrument and analysis optimization:

  • Flow cytometer settings:

    • Use appropriate voltage for FITC detection

    • Establish consistent PMT settings across experiments

    • Consider compensation requirements with other fluorophores

    • Validate with beads of known fluorescence intensity

  • Signal preservation strategies:

    • Keep samples on ice and protected from light

    • Add 1% paraformaldehyde for short-term fixation if analysis is delayed

    • Analyze within 24 hours of staining when possible

    • Consider spectral flow cytometry for challenging panels

By systematically evaluating these parameters, researchers can maximize the performance of FITC-conjugated SLC3A2 antibodies across different experimental systems, ensuring reliable and reproducible results for studying SLC3A2's role in cancer biology and disulfidoptosis pathways.

How can I effectively integrate SLC3A2-FITC flow cytometry data with other molecular profiling datasets?

Integrating SLC3A2-FITC flow cytometry data with other molecular datasets requires careful data processing and analysis strategies:

Data integration workflow:

  • Data normalization and preprocessing:

    • Flow cytometry: Transform MFI to standardized scores or ratio to isotype control

    • RNA-seq: Apply appropriate normalization methods (TPM, RPKM, DESeq2)

    • Protein arrays: Use internal standards and baseline correction

    • Apply batch effect correction when integrating datasets from different experiments

  • Correlation analysis framework:

    • Direct correlation: Compare SLC3A2 protein (flow) vs. mRNA expression

    • Pathway correlation: Relate SLC3A2 expression to relevant pathway activities

    • Calculate Spearman/Pearson correlations with confidence intervals

    • Generate visualization matrices showing relationship strengths

  • Multi-omics integration approaches:

Integration MethodApplicationStrengths
MOFA (Multi-Omics Factor Analysis)Identifying latent factors across datasetsCaptures sources of variability common to multiple data types
DIABLO (Data Integration Analysis for Biomarker discovery)Biomarker discoveryIdentifies correlated variables across datasets
Similarity Network FusionPatient stratificationCreates integrated patient networks
NMF (Non-negative Matrix Factorization)Pattern discoveryIdentifies recurring patterns across datasets

Research application strategies:

  • Clinical correlation analysis:

    • Integrate SLC3A2 flow cytometry data with patient survival information

    • Correlate with treatment response metrics

    • Perform multivariate analysis with clinical parameters

    • Develop predictive models incorporating multiple data types

  • Biological insight extraction:

    • Map SLC3A2 expression to known pathway activities

    • Identify gene sets correlated with SLC3A2 protein levels

    • Compare SLC3A2-high vs. SLC3A2-low groups across multiple parameters

    • Apply enrichment analysis to identify biological processes

As demonstrated in recent research, SLC3A2 expression negatively correlates with immune infiltration markers and immune checkpoint molecules . This relationship can be further explored by integrating flow cytometry data with transcriptomic profiling of the tumor microenvironment, potentially revealing mechanisms by which SLC3A2 contributes to immunosuppression and poor prognosis in cancers like nasopharyngeal carcinoma and head and neck squamous cell carcinoma.

What are common troubleshooting approaches for inconsistent SLC3A2-FITC staining patterns?

When encountering inconsistent staining patterns with SLC3A2-FITC antibodies, implement this systematic troubleshooting workflow:

Problem: Low or absent signal

  • Antibody viability assessment:

    • Check antibody storage conditions and expiration date

    • Perform positive control staining with known SLC3A2-expressing cells

    • Test alternative antibody clones or lots

    • Verify fluorophore integrity using spectrophotometer if available

  • Sample preparation evaluation:

    • Assess cell viability (should be >90% for optimal results)

    • Review fixation protocol (overfixation can mask epitopes)

    • Try different permeabilization conditions if needed

    • Ensure samples were protected from light during processing

  • Protocol modifications to try:

    • Increase antibody concentration

    • Extend incubation time or adjust temperature

    • Add protein transport inhibitors before harvest if internalizing

    • Try signal amplification methods (e.g., biotin-streptavidin system)

Problem: High background/non-specific staining

  • Blocking optimization:

    • Increase blocking agent concentration (5-10% serum)

    • Try alternative blocking agents (BSA, gelatin, commercial blockers)

    • Extend blocking time (60 minutes)

    • Include Fc receptor blocking step for immune cells

  • Washing protocol refinement:

    • Increase number of wash steps (3-5 washes)

    • Use larger wash volumes

    • Include detergent in wash buffer (0.05-0.1% Tween-20)

    • Ensure complete buffer removal between washes

  • Antibody dilution assessment:

    • Perform titration series to identify optimal concentration

    • Compare with isotype control at identical concentration

    • Try alternative diluent formulations

    • Pre-absorb antibody if cross-reactivity suspected

Problem: Variable staining across experiments

  • Standardization approaches:

    • Use calibration beads to standardize flow cytometer settings

    • Implement standard operating procedures with precise timing

    • Prepare larger antibody aliquots to reduce freeze-thaw cycles

    • Include internal control samples across experiments

  • Critical variables to control:

    • Cell density during culture and staining

    • Passage number of cell lines

    • Lot numbers of reagents

    • Consistent sample processing times

These troubleshooting approaches will help resolve common issues with SLC3A2-FITC staining, ensuring reliable data generation for studying SLC3A2's role in cancer biology and disulfidoptosis pathways.

How do I validate the specificity of SLC3A2-FITC antibodies in my experimental system?

Validating antibody specificity is critical for generating reliable research results. For SLC3A2-FITC antibodies, implement this comprehensive validation strategy:

Genetic validation approaches:

  • Knockout/knockdown validation:

    • Generate SLC3A2 knockout cells using CRISPR/Cas9

    • Use siRNA or shRNA for transient knockdown

    • Compare staining patterns between wildtype and knockout/knockdown samples

    • Rescue experiments by re-expressing SLC3A2 in knockout cells

  • Overexpression validation:

    • Transfect cells with SLC3A2 expression vector

    • Create stable cell lines with inducible SLC3A2 expression

    • Compare staining intensity across expression levels

    • Include epitope-tagged constructs as controls

Biochemical validation methods:

  • Multi-method confirmation:

    • Western blot with the same antibody (unconjugated version)

    • Immunoprecipitation followed by mass spectrometry

    • RNA expression correlation (RT-qPCR or RNA-seq)

    • Comparison with alternative antibody clones

  • Peptide blocking experiments:

    • Pre-incubate antibody with blocking peptide

    • Create dose-response curve with increasing peptide concentration

    • Include irrelevant peptide as negative control

    • Quantify signal reduction with blocked antibody

Flow cytometry-specific validation:

  • Comparative analysis workflow:

    • Side-by-side comparison with other validated SLC3A2 antibodies

    • Cross-validation with multiple cell types with known expression

    • Fluorescence-minus-one (FMO) controls

    • Isotype controls at identical concentration and F/P ratio

  • Advanced specificity assessments:

    • Competitive binding studies with unlabeled antibody

    • Cross-adsorption against related proteins

    • Epitope mapping to confirm target region

    • Validation across different species if cross-reactivity claimed

Documentation requirements:

Maintain comprehensive validation records including:

  • Experimental approach and rationale

  • Complete methods description

  • Quantitative results (e.g., signal reduction percentages)

  • Representative images or flow cytometry plots

  • Antibody details (clone, lot, supplier, concentration)

How can I use SLC3A2-FITC antibodies to investigate the relationship between SLC3A2 and drug resistance mechanisms?

SLC3A2's role in amino acid transport and disulfidoptosis pathways makes it a significant factor in drug resistance mechanisms. To investigate this relationship using SLC3A2-FITC antibodies:

Experimental design framework:

  • Cell model selection:

    • Paired sensitive/resistant cell lines

    • Isogenic models with manipulated SLC3A2 expression

    • Patient-derived cells with varied drug responses

    • 3D spheroid or organoid cultures for physiological relevance

  • Treatment response assessment:

    • Dose-response curves with relevant therapeutics

    • Time-course analysis of SLC3A2 expression post-treatment

    • Combination treatments targeting SLC3A2/xCT system

    • Recovery period analysis after drug withdrawal

Flow cytometry analysis approaches:

  • Single-cell correlation workflow:

    • Co-stain with SLC3A2-FITC and apoptosis markers (Annexin V, cleaved caspase-3)

    • Evaluate SLC3A2 expression in surviving vs. dying cell populations

    • Track SLC3A2 expression changes during treatment cycles

    • Sort SLC3A2-high vs. SLC3A2-low populations for functional testing

  • Methodological considerations:

    • Include cell cycle analysis to account for cell cycle-dependent effects

    • Monitor SLC3A2/SLC7A11 co-expression patterns

    • Assess drug accumulation in relation to SLC3A2 expression

    • Measure redox status markers alongside SLC3A2

Mechanism exploration strategies:

  • Pathway analysis approach:

    • Manipulate SLC3A2 expression and assess drug sensitivity

    • Measure cystine uptake and glutathione levels

    • Evaluate disulfidoptosis markers in relation to drug response

    • Assess collateral sensitivities in SLC3A2-high cells

  • Combinatorial targeting:

    • Test system xc- inhibitors in combination with standard therapeutics

    • Evaluate glutathione synthesis inhibitors in SLC3A2-high cells

    • Target downstream pathways affected by SLC3A2 overexpression

    • Explore synthetic lethality approaches

Research suggests that SLC3A2 overexpression in cancers like nasopharyngeal carcinoma and head and neck squamous cell carcinoma correlates with poor prognosis , potentially through mechanisms involving altered cell metabolism, redox regulation, and immune evasion. By using SLC3A2-FITC antibodies to track expression at the single-cell level during drug treatment, researchers can gain insights into how SLC3A2 contributes to therapeutic resistance and identify strategies to overcome it.

What are the emerging research directions for SLC3A2 in cancer biology and therapeutic development?

Recent advances in SLC3A2 research have revealed several promising directions for future investigation and therapeutic development. The identification of SLC3A2 as a prognostic biomarker in nasopharyngeal carcinoma and head and neck squamous cell carcinoma opens new avenues for both diagnostic and therapeutic applications . The negative correlation between SLC3A2 expression and immune cell infiltration suggests potential roles in immunosuppression mechanisms that warrant further exploration .

Future research directions may focus on several key areas:

  • Therapeutic targeting strategies:

    • Development of SLC3A2-specific inhibitors or antibody-drug conjugates

    • Combination approaches targeting both SLC3A2 and its partner protein SLC7A11

    • Exploration of synthetic lethality approaches in SLC3A2-overexpressing tumors

    • Investigation of SLC3A2 as a predictive biomarker for immunotherapy response

  • Mechanistic investigations:

    • Further characterization of SLC3A2's role in disulfidoptosis pathways

    • Examination of the relationship between SLC3A2 and immune cell function

    • Exploration of context-dependent effects in different cancer types

    • Investigation of regulatory mechanisms controlling SLC3A2 expression

  • Clinical translation opportunities:

    • Development of standardized SLC3A2 assessment protocols for patient stratification

    • Integration of SLC3A2 testing into prognostic algorithms

    • Prospective trials evaluating SLC3A2 as a predictive biomarker

    • Exploration of SLC3A2 in liquid biopsy applications

FITC-conjugated SLC3A2 antibodies will continue to serve as valuable tools for these investigations, enabling multiparameter analysis of SLC3A2 expression in relation to other markers and cellular functions. As research progresses, the development of standardized protocols and validation approaches will be crucial for reliable and reproducible results across different experimental systems and clinical applications.

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