SMR1 Antibody

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Description

Introduction to SMR1 Antibody

SMR1 (Submandibular Rat 1) is a protein initially identified in rat submandibular glands, playing roles in anti-inflammatory responses and tissue-specific functions . SMR1 antibodies are immunological tools developed to detect and study this protein’s expression, posttranslational modifications, and biological activity. These antibodies have been critical in elucidating SMR1’s distribution across tissues, including salivary glands, lungs, and reproductive organs .

Development and Characterization of SMR1 Antibodies

Polyclonal antibodies against SMR1 were generated using synthetic peptides corresponding to distinct sequences within the protein:

  • Anti-SMR1(216): Targets the anti-inflammatory TDIFEGG sequence at the C-terminus .

  • Anti-SMR1(219): Binds to the SNPPTQLLSTEAQANTK sequence .

Key Validation Data:

  • Specificity: Both antibodies showed no cross-reactivity with unrelated peptides in ELISA .

  • Western Blot Performance:

    • Detected SMR1 isoforms ranging from 12–42 kDa, with dominant bands at 19, 21, and 23 kDa in rat submandibular glands .

    • Anti-SMR1(216) showed stronger reactivity with 16-kDa bands, while anti-SMR1(219) preferentially recognized 12-kDa bands .

  • 2D Gel Analysis: Revealed 36 distinct SMR1 spots (pI 4–7), confirming extensive posttranslational modifications .

Tissue-Specific Expression of SMR1

SMR1 antibodies have mapped the protein’s expression across rat tissues:

TissueRelative SMR1 LevelsKey Modifications
Submandibular GlandHighN-glycosylation dominant
LungModerateN-glycanase-resistant isoforms
Penis/TestisLowAggregated high-molecular-mass forms
SalivaDetectableFragments <3 kDa with TDIFEGG motifs

Notable Findings:

  • Saliva contains TDIFEGG-containing peptides (<3 kDa) in 77–85% of rats, suggesting bioactive anti-inflammatory fragments .

  • SMR1 in the penis is downregulated 82.5-fold post-prostatectomy, linking it to erectile dysfunction .

Posttranslational Modifications of SMR1

SMR1 undergoes significant processing, as revealed by antibody-based assays:

  • Glycosylation:

    • N-glycosylation accounts for ~60% of SMR1’s molecular diversity (e.g., 23- and 21-kDa bands reduced to 16/12 kDa after N-glycanase treatment) .

    • No evidence of phosphorylation or O-linked glycosylation .

  • Proteolytic Cleavage:

    • Full-length SMR1 (16 kDa) is processed into a 12-kDa fragment (Arg70–C terminus) .

Functional Implications of SMR1 Antibody Studies

  • Anti-Inflammatory Activity:

    • Anti-SMR1(216) confirmed TDIFEGG peptides in saliva, which are implicated in reducing pulmonary inflammation .

  • Role in Disease Models:

    • Post-prostatectomy erectile dysfunction correlates with SMR1 downregulation in the penis, highlighting its potential therapeutic relevance .

Table 1: SMR1 Immunoreactivity in Saliva Fractions

Fraction (Molecular Mass)Immunoreactivity (Anti-SMR1(216))
>3 kDa100% (13/13 rats)
<3 kDa81% (21/26 rats)

Table 2: SMR1 Expression Post-Prostatectomy

Time Post-SurgerySMR1 mRNA Fold ChangeProtein Level (vs. Controls)
2 days↓82.5Confirmed by Western blot

Applications and Limitations

  • Applications:

    • Tracking SMR1 in inflammation models.

    • Studying post-surgical neurogenic dysfunction .

  • Limitations:

    • Low protein abundance complicates mass spectrometry analysis .

    • Cross-reactivity with aggregated forms in certain tissues (e.g., lung) .

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
SMR1 antibody; LGO antibody; At3g10525 antibody; F13M14.31 antibody; F18K10.10 antibody; Cyclin-dependent protein kinase inhibitor SMR1 antibody; Protein LOSS OF GIANT CELLS FROM ORGANS antibody; Protein SIAMESE-RELATED 1 antibody
Target Names
SMR1
Uniprot No.

Target Background

Function
SMR1 is a probable cyclin-dependent protein kinase (CDK) inhibitor that functions as a repressor of mitosis in the endoreduplication cell cycle. It cooperates with SIM and SMR2 to promote endoreplication during leaf development. Specifically, SMR1 regulates endoreduplication in epidermal pavement cells, contributing to the cell size pattern. Moreover, it is essential for giant cell formation. SMR1 also acts as a positive regulator of effector-triggered immunity (ETI).
Gene References Into Functions
  1. SMR1 plays a crucial role in regulating cell-cycle progression and innate immunity. PMID: 26561564
  2. SIM and SMR1 are involved in hyperphosphorylation of the cell-cycle regulator RBR1 and overexpression of E2F target genes. PMID: 25455564
Database Links

KEGG: ath:AT3G10525

STRING: 3702.AT3G10525.1

UniGene: At.39916

Subcellular Location
Nucleus.
Tissue Specificity
Expressed in roots, leaves, stems, siliques and flowers. Expressed in the root elongation zone.

Q&A

Here’s a structured collection of FAQs tailored for researchers working with SMR1 antibody in academic settings, prioritizing methodological guidance and experimental design insights based on current research:

Advanced Research Challenges

How can conflicting data on SMR1’s sexual dimorphism be resolved?

  • Experimental design: Include both sexes in cohort studies and stratify results by sex.

  • Controls: Use gonadectomy models to isolate hormonal vs. genetic influences .

  • Antibody validation: Ensure antibodies do not cross-react with sex-specific isoforms (e.g., via knockout validation).

What strategies optimize SMR1 antibody performance in in vivo studies?

  • Species switching: Reformat SMR1 antibodies into host-matched frameworks (e.g., rat-to-mouse chimeras) to reduce immunogenicity .

  • Format engineering: Use monovalent (1:1) bispecific formats to avoid over-saturation of low-abundance targets .

  • Manufacturability: Prioritize frameworks with high expression (>50 mg/L) and low aggregation (<5%) using human germline backbones (e.g., VH3/VK1 families) .

How do researchers address cross-reactivity between SMR1 and homologous proteins (e.g., CABS1)?

  • Epitope mapping: Use peptide arrays to identify antibody-binding regions unique to SMR1.

  • Competitive ELISA: Pre-incubate antibodies with recombinant CABS1 to test specificity .

  • Bioinformatics: Align SMR1/CABS1 sequences (e.g., Clustal Omega) to predict conserved regions .

What computational tools complement SMR1 antibody-based studies?

  • GEO datasets: Analyze public RNA-seq data to identify tissues with high CABS1 expression (e.g., testes, salivary glands) .

  • Molecular docking: Model TDIFEGG peptide interactions with inflammatory receptors (e.g., TLR4) using Rosetta or HADDOCK.

Methodological Pitfalls and Solutions

Why might SMR1 antibody fail in immunohistochemistry (IHC)?

  • Fixation artifacts: Prolonged formalin exposure masks epitopes. Use antigen-retrieval buffers (citrate pH 6.0).

  • Autofluorescence: Employ tyramide signal amplification (TSA) to enhance signal-to-noise ratios .

How does antibody format (IgG vs. Fab) impact SMR1 functional studies?

FormatAdvantageDisadvantage
Full-length IgGLong serum half-lifeFc-mediated off-target effects
Fab fragmentsReduced nonspecific bindingRapid clearance in vivo
Bispecific (CD3ε/SMR1)Targeted immune activationRisk of cytokine storms

What emerging techniques could refine SMR1 antibody applications?

  • Single-cell RNA-seq: Identify SMR1-expressing cell subtypes in heterogeneous tissues.

  • Phage display libraries: Engineer affinity-matured variants for low-abundance targets.

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