SRMS Antibody

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Description

Definition and Biological Role of SRMS

SRMS (UniProt ID: Q9H3Y6) is encoded by the SRMS gene (Gene ID: 6725) and regulates critical processes like keratinocyte proliferation and autophagy . Unlike the similarly abbreviated SRM (spermidine synthase), SRMS phosphorylates downstream targets such as DOK1 and modulates cancer cell growth .

Key Features of SRMS Protein

  • Molecular Weight: 55 kDa (observed)

  • Domains: Lacks myristylation and C-terminal regulatory sites, distinguishing it from other Src-family kinases .

  • Function: Inhibits autophagy, promoting tumor progression .

Applications of SRMS Antibodies

SRMS antibodies are widely used in molecular research to study kinase activity, protein interactions, and therapeutic targeting.

Common Applications

ApplicationRecommended DilutionReactivityKey Findings
Western Blot (WB)1:2000 Human, MouseDetects 55 kDa band
Immunoprecipitation (IP)0.5–4.0 µg per mg lysate HumanValidated in HL-60 cells
Immunohistochemistry (IHC)1:100–1:400 HumanStrong staining in breast cancer tissue
Immunofluorescence (IF)1:25 MouseLocalizes SRMS in keratinocytes

SRMS in Cancer and Autophagy

  • Mechanism: SRMS inhibition via ibrutinib (FDA-approved kinase inhibitor) activates autophagy and suppresses tumor growth .

    • IC50: 33 nM for wild-type SRMS .

    • Mutant Resistance: T302M mutation renders SRMS resistant to ibrutinib, confirmed via immunoprecipitation and WB .

Key Study Data

Experimental ModelInterventionOutcome
U2OS cells (SRMS knockout)Ibrutinib treatmentReduced SRMS autophosphorylation
SRMS(T302M) mutantIbrutinib exposureNo enzymatic inhibition

Product Comparison

SupplierCatalog NumberHostApplicationsReactivityPrice
Proteintech26447-1-APRabbitIP, IHC, ELISAHuman$320+
Boster BioA06352-1RabbitIF, WBMouse$370+
Novus BiologicalsNBP2-55947RabbitWB, IHC, ICCHuman, Mouse$529+

Validation Criteria:

  • Proteintech: Verified in IP using HL-60 lysates and IHC on breast cancer tissue .

  • Boster Bio: Tested in WB (1:2000 dilution) and IF .

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, we are able to dispatch orders within 1-3 business days of receipt. Delivery timelines may vary depending on the purchase method and location. For specific delivery estimates, please consult your local distributor.
Synonyms
C20orf148 antibody; dJ697K14.1 antibody; EC 2.7.1.112 antibody; Src related kinase lacking C terminal regulatory tyrosine and N terminal myristylation sites antibody; SRM antibody; SRMS antibody; SRMS_HUMAN antibody; Tyrosine protein kinase Srms antibody; Tyrosine-protein kinase Srms antibody
Target Names
SRMS
Uniprot No.

Target Background

Function
SRMS is a non-receptor tyrosine-protein kinase that phosphorylates DOK1 on tyrosine residues. It also phosphorylates KHDRBS1/SAM68 and VIM on tyrosine residues. Phosphorylation of KHDRBS1 is EGF-dependent.
Gene References Into Functions
  1. SRMS phosphorylated the C terminus of BRK, but not SRC. PMID: 25897081
  2. The unique N-terminal region of SRMS regulates enzymatic activity and phosphorylation of its novel substrate docking protein 1. PMID: 23822091
Database Links

HGNC: 11298

OMIM: 617797

KEGG: hsa:6725

STRING: 9606.ENSP00000217188

Protein Families
Protein kinase superfamily, Tyr protein kinase family, SRC subfamily
Subcellular Location
Cytoplasm.
Tissue Specificity
Highly expressed in most breast cancers (at protein level).

Q&A

What is SRMS and why are antibodies against it important in research?

SRMS (Tyrosine-protein kinase Srms) is a non-receptor tyrosine kinase involved in various cellular signaling pathways. Antibodies targeting SRMS are critical research tools that enable the detection, quantification, and characterization of this protein in biological systems. These antibodies facilitate investigations into SRMS expression patterns, localization, and functional roles in normal physiology and disease states. Most commercially available SRMS antibodies are rabbit polyclonal antibodies designed for research applications including Western blotting, immunohistochemistry, and immunofluorescence techniques . The importance of SRMS antibodies lies in their ability to provide insight into signaling pathways that may be relevant to various biological processes and potentially disease mechanisms.

What experimental applications are SRMS antibodies validated for?

SRMS antibodies have been validated for multiple experimental applications, with varying levels of reactivity depending on the specific antibody. Common applications include:

  • Western Blotting (WB): For detection of denatured SRMS protein in cell/tissue lysates

  • Immunohistochemistry (IHC/IHC-P): For localization of SRMS in tissue sections

  • Immunofluorescence (IF): For visualization of SRMS distribution in cells

  • ELISA: For quantitative measurement of SRMS protein levels

When selecting an SRMS antibody, researchers should verify that the antibody has been validated specifically for their application of interest and target species. For example, some SRMS antibodies react with both human and mouse samples, while others are species-specific . Validation typically involves demonstrating specificity, sensitivity, and reproducibility for each application through standardized protocols.

How do I select the appropriate SRMS antibody for my research?

Selecting the appropriate SRMS antibody requires consideration of several key factors:

  • Species Reactivity: Ensure the antibody recognizes SRMS in your experimental species (e.g., human, mouse, rat). Different antibodies have different cross-reactivity profiles .

  • Application Compatibility: Verify the antibody has been validated for your specific application (WB, IHC, IF, ELISA). Some antibodies perform well in certain applications but not others .

  • Clonality: Determine whether a polyclonal or monoclonal antibody best suits your needs. Polyclonal antibodies (most common for SRMS) recognize multiple epitopes, potentially increasing sensitivity but with potential for cross-reactivity .

  • Validation Data: Review published validation data demonstrating the antibody's specificity and performance. Quality antibodies should have documentation showing absence of non-specific binding .

  • Binding Epitope: For specific research questions, consider antibodies targeting particular epitopes or domains of SRMS that may be relevant to your research hypothesis .

The selection process should involve thorough review of product documentation, published literature, and sometimes preliminary testing to ensure optimal performance in your experimental system.

What are the optimal conditions for using SRMS antibodies in Western blotting?

Optimizing Western blotting with SRMS antibodies requires attention to several methodological considerations:

Sample Preparation:

  • Use fresh samples with appropriate protease inhibitors

  • Typical protein concentration: 20-50 μg total protein per lane

  • Denature samples in reducing buffer (with DTT or β-mercaptoethanol)

Electrophoresis and Transfer:

  • 8-10% SDS-PAGE gels are typically suitable for SRMS (approximately 55 kDa)

  • Use standard PVDF or nitrocellulose membranes

  • Transfer at 100V for 60-90 minutes in cold transfer buffer

Antibody Incubation:

  • Blocking: 5% non-fat dry milk or BSA in TBST (1-2 hours at room temperature)

  • Primary antibody: Dilute SRMS antibody 1:500 to 1:2000 in blocking buffer

  • Incubation: Overnight at 4°C with gentle agitation

  • Secondary antibody: Anti-rabbit HRP-conjugated (1:5000-1:10000)

Detection and Optimization:

  • Use enhanced chemiluminescence (ECL) detection

  • Include positive and negative controls to validate specificity

  • If background is high, increase blocking time or adjust antibody dilution

  • For weak signals, extend exposure time or increase antibody concentration

These conditions may require optimization based on your specific experimental system and the particular SRMS antibody being used. Preliminary titration experiments are recommended to determine optimal antibody concentrations.

How can I optimize immunohistochemistry protocols for SRMS detection in tissue samples?

Optimizing immunohistochemistry (IHC) for SRMS detection requires methodical protocol development:

Tissue Preparation:

  • Fix tissues in 10% neutral buffered formalin (24-48 hours)

  • Paraffin embedding followed by sectioning at 4-6 μm thickness

  • Mount sections on positively charged slides

Antigen Retrieval (Critical Step):

  • Heat-induced epitope retrieval in citrate buffer (pH 6.0) or EDTA buffer (pH 9.0)

  • Pressure cooker method: 121°C for 3-5 minutes or

  • Microwave method: 95-98°C for 15-20 minutes

Immunostaining Protocol:

  • Peroxidase blocking: 3% H₂O₂ in methanol (10 minutes)

  • Protein blocking: 5% normal goat serum (30-60 minutes)

  • Primary antibody: SRMS antibody diluted 1:100 to 1:500 in blocking buffer

  • Incubation: Overnight at 4°C or 1-2 hours at room temperature

  • Detection system: Polymer-based detection with DAB chromogen

  • Counterstain: Hematoxylin (light staining)

Validation and Controls:

  • Include positive control tissues known to express SRMS

  • Include negative controls (primary antibody omission)

  • Consider peptide competition assays to confirm specificity

Troubleshooting Common Issues:

  • Weak staining: Increase antibody concentration or incubation time

  • Non-specific background: Increase blocking time or dilute antibody

  • False negatives: Optimize antigen retrieval method

When implementing this protocol, systematic optimization of each step for your specific tissue type and fixation conditions will yield the most reliable results.

What quantitative methods can be used to assess SRMS expression levels?

Several quantitative methods can be employed to accurately measure SRMS expression:

ELISA-Based Quantification:

  • Sandwich ELISA using anti-SRMS capture and detection antibodies

  • Typical sensitivity: 10-100 pg/mL

  • Standard curve generation using recombinant SRMS protein

  • Sample types: Cell lysates, tissue homogenates, serum/plasma

Mass Spectrometry-Based Quantification:

  • LC/ESI-SRM/MS (Liquid Chromatography/Electrospray Ionization-Selected Reaction Monitoring/Mass Spectrometry)

  • Selective quantification using unique peptides from SRMS

  • Internal standards: Stable isotope-labeled peptides or homologous peptides

  • Advantages: High specificity and multiplexing capability

  • Sensitivity: Lower than ELISA but more specific

Western Blot Densitometry:

  • Semi-quantitative assessment using image analysis software

  • Normalization to housekeeping proteins (β-actin, GAPDH)

  • Linear dynamic range: 10-fold to 20-fold concentration differences

  • Limitations: Lower precision than ELISA or MS methods

qRT-PCR for mRNA Expression:

  • Indirect measure of protein levels

  • Reference gene normalization (GAPDH, β-actin)

  • Correlation with protein levels should be validated

Each method offers distinct advantages, with ELISA providing high sensitivity for protein quantification, mass spectrometry offering superior specificity, and qRT-PCR enabling high-throughput analysis of transcript levels. Method selection should be guided by experimental requirements for sensitivity, specificity, and available sample material .

How can SRMS antibodies be integrated into Antibody Recruiting Molecule (ARM) strategies?

Integrating SRMS antibodies into Antibody Recruiting Molecule (ARM) strategies represents an advanced application at the intersection of immunology and chemical biology:

ARM Design Principles for SRMS Targeting:

  • ARMs are bifunctional molecules with two key components:

    • Tumor Binding Module (TBM): Designed to target SRMS-expressing cells

    • Antibody Binding Module (ABM): Recruits endogenous antibodies

Implementation Strategies:

  • SRMS-Targeted ARMs:

    • Design TBM to bind specifically to cell-surface SRMS or associated proteins

    • ABM selection based on prevalent endogenous antibodies (anti-DNP, anti-αGal, anti-L-rhamnose)

    • Linker optimization for appropriate spatial arrangement and flexibility

  • Validation Approaches:

    • Flow cytometry to confirm ternary complex formation

    • Confocal microscopy for spatial arrangement visualization

    • Cytotoxicity assays to confirm immune-mediated clearance

  • Multivalency Considerations:

    • Multiple ABMs increase antibody recruitment efficiency

    • Multiple TBMs enhance targeting specificity and avidity

    • Optimal spacing between modules impacts formation of immunological synapses

  • Potential Applications:

    • Targeted elimination of SRMS-overexpressing cancer cells

    • Immune redirection to SRMS-expressing pathological tissues

    • Development of novel immunotherapeutic approaches

This advanced application requires interdisciplinary expertise spanning antibody technology, medicinal chemistry, and immunology. Successful implementation depends on detailed characterization of SRMS expression patterns and careful design of ARM architecture to optimize the formation of ternary complexes between target cells, ARM molecules, and endogenous antibodies .

What methodologies can address cross-reactivity concerns with SRMS antibodies?

Addressing cross-reactivity concerns with SRMS antibodies requires rigorous validation strategies:

Cross-Reactivity Assessment Methods:

  • Knockout/Knockdown Validation:

    • CRISPR/Cas9-mediated SRMS knockout cell lines

    • siRNA knockdown of SRMS expression

    • Compare antibody reactivity between wild-type and knockout/knockdown samples

  • Orthogonal Detection Methods:

    • Mass spectrometry confirmation of detected protein bands

    • Parallel detection with multiple antibodies targeting different SRMS epitopes

    • Correlation of protein detection with mRNA expression data

  • Epitope Mapping and Competition Assays:

    • Peptide competition with the immunizing antigen

    • Alanine scanning mutagenesis to identify critical binding residues

    • Epitope mapping to identify potential cross-reactive regions

  • Homology Analysis:

    • In silico analysis of sequence similarity with related kinases

    • Pre-absorption with purified homologous proteins

    • Testing against panels of related tyrosine kinases

Cross-Reactivity Mitigation Strategies:

  • Antibody Purification:

    • Affinity purification against specific SRMS epitopes

    • Negative selection against potentially cross-reactive proteins

    • Epitope-specific purification for enhanced specificity

  • Assay Optimization:

    • Increased stringency in washing steps

    • Optimization of blocking reagents (specific to application)

    • Titration to determine optimal antibody concentration

  • Analytical Controls:

    • Inclusion of appropriate negative controls

    • Parallel testing with multiple antibody clones

    • Spike-in experiments with recombinant proteins

These methodologies provide a systematic approach to characterizing and addressing potential cross-reactivity, ensuring experimental results accurately reflect SRMS biology rather than artifacts from antibody non-specificity.

How can SRMS antibodies be used to investigate protein-protein interactions and signaling networks?

SRMS antibodies can be powerful tools for elucidating protein-protein interactions and signaling networks through several methodologies:

Co-Immunoprecipitation (Co-IP) Approaches:

  • Use SRMS antibodies to precipitate SRMS along with interacting partners

  • Mild lysis conditions to preserve protein complexes (1% NP-40 or CHAPS)

  • Reverse Co-IP with antibodies against suspected interaction partners

  • Mass spectrometry analysis of co-precipitated proteins for unbiased discovery

  • Controls: IgG control, SRMS-depleted lysates

Proximity Ligation Assay (PLA):

  • Detection of protein-protein interactions in situ with subcellular resolution

  • Requires SRMS antibody paired with antibody against potential interaction partner

  • Signal amplification allows detection of transient interactions

  • Quantitative assessment of interaction frequency in different cellular compartments

Phosphoproteomic Analysis:

  • Immunoprecipitation with SRMS antibodies followed by phosphopeptide enrichment

  • Identification of SRMS substrates via kinase assays with immunopurified SRMS

  • Phospho-specific antibodies to track SRMS-dependent phosphorylation events

  • Integration with inhibitor studies to establish causality in signaling cascades

FRET/BRET-Based Approaches:

  • Antibody-based FRET sensors for conformational changes in SRMS

  • Combination with genetically encoded fluorescent fusion proteins

  • Real-time monitoring of SRMS interactions and activation states

  • Spatial and temporal resolution of signaling events

Network Analysis Integration:

  • Correlation of SRMS interactome with transcriptomic changes

  • Pathway enrichment analysis of SRMS-associated proteins

  • Integration with publicly available protein interaction databases

  • Systems biology approaches to position SRMS within broader signaling networks

By employing these methodologies, researchers can systematically map the SRMS interactome and determine its functional role within cellular signaling networks. The combination of antibody-based isolation techniques with downstream analysis methods provides a powerful approach to understanding the complex biology of this tyrosine kinase .

What are the common sources of variability in SRMS antibody experiments and how can they be controlled?

Controlling experimental variability when working with SRMS antibodies requires systematic attention to multiple factors:

Sources of Variability and Mitigation Strategies:

Source of VariabilityManifestationControl Measures
Antibody Lot-to-Lot VariationDifferent signal intensity or background- Validate each new lot against reference standard
- Purchase larger lots for long-term studies
- Maintain consistent antibody:protein ratio
Sample Preparation InconsistencyVariable protein recovery or degradation- Standardize cell lysis procedures
- Use fresh protease/phosphatase inhibitors
- Control for post-translational modifications
Technical ExecutionDay-to-day variation in results- Develop detailed SOPs
- Maintain consistent incubation times/temperatures
- Use automated systems where possible
Biological VariationCell density, passage number effects- Control cell confluence (70-80%)
- Use consistent passage numbers
- Pool biological replicates when appropriate
Detection System VariabilityInconsistent signal development- Standardize exposure times
- Use internal loading controls
- Employ digital imaging systems with linear range

Quality Control Measures:

  • Reference Standards:

    • Maintain aliquots of positive control lysates/tissues

    • Include standard curve in quantitative assays

    • Use recombinant SRMS protein as positive control

  • Statistical Approaches:

    • Perform sufficient biological replicates (n≥3)

    • Apply appropriate statistical tests for experimental design

    • Consider power analysis for sample size determination

  • Documentation Practices:

    • Record detailed metadata for each experiment

    • Document antibody information (catalog number, lot, dilution)

    • Maintain laboratory notebooks with all experimental parameters

How do I validate the specificity of SRMS antibodies for my experimental system?

Validating SRMS antibody specificity requires a multi-faceted approach tailored to your experimental system:

Comprehensive Validation Strategy:

  • Genetic Validation Approaches:

    • CRISPR/Cas9 knockout of SRMS gene

    • siRNA-mediated knockdown (transient)

    • Overexpression of tagged SRMS construct

    • Compare antibody reactivity patterns between manipulated and control samples

  • Biochemical Validation Methods:

    • Peptide competition assays with immunizing antigen

    • Pre-absorption with recombinant SRMS protein

    • Western blot analysis showing expected molecular weight band

    • Mass spectrometry confirmation of immunoprecipitated proteins

  • Orthogonal Detection Techniques:

    • Correlation between protein and mRNA levels

    • Comparative analysis with multiple SRMS antibodies targeting different epitopes

    • Immunoprecipitation followed by Western blot (IP-WB)

    • Immunofluorescence pattern correlation with GFP-tagged SRMS

  • Tissue/Cell Type-Specific Controls:

    • Tissues/cells known to express or lack SRMS

    • Comparison with established literature on expression patterns

    • Correlation with public database expression profiles

    • Developmental or stimulation-dependent expression changes

Documentation of Validation:

  • Maintain detailed records of all validation experiments

  • Document controls and experimental conditions

  • Establish accepted criteria for passing validation

  • Consider pre-registering validation protocols for transparency

What approaches can resolve contradictory results when using different SRMS antibodies?

Resolving contradictory results obtained with different SRMS antibodies requires systematic investigation and reconciliation strategies:

Analytical Framework for Resolving Contradictions:

  • Epitope-Based Analysis:

    • Map the epitopes recognized by each antibody

    • Consider whether different isoforms or post-translational modifications might affect epitope accessibility

    • Evaluate potential for conformational versus linear epitope recognition

    • Design experiments targeting conserved versus variable regions

  • Technical Reconciliation:

    • Standardize experimental conditions across antibodies

    • Optimize protocols individually for each antibody

    • Perform side-by-side comparisons under identical conditions

    • Consider whether different applications (WB vs. IHC vs. IF) yield consistent results

  • Orthogonal Validation Approaches:

    • Mass spectrometry analysis to confirm protein identity

    • Correlation with mRNA expression data

    • Genetic manipulation (overexpression, knockdown) to confirm specificity

    • Multiple detection methods with the same sample set

  • Structured Evaluation Protocol:

    • Develop a decision matrix for weighing evidence from different antibodies

    • Consider antibody generation methods (polyclonal vs. monoclonal)

    • Evaluate validation data provided by manufacturers

    • Consult literature for previous reconciliation of similar contradictions

Case-Based Resolution Strategies:

Contradiction TypeInvestigation ApproachResolution Strategy
Differential LocalizationCo-staining with organelle markersDetermine if differences represent distinct pools or artifacts
Expression Level DiscrepanciesTitration experiments with recombinant standardsEstablish relative sensitivity and linear range for each antibody
Different MW BandsPhosphatase treatment, isoform-specific PCRIdentify if bands represent modified forms or non-specific binding
Stimulus-Response DifferencesTime-course and dose-response with multiple antibodiesDetermine temporal dynamics and sensitivity thresholds

By systematically investigating the source of contradictions and integrating multiple lines of evidence, researchers can develop a more complete understanding of SRMS biology that accommodates or explains apparent contradictions in antibody-based experimental results .

How can SRMS antibodies be used in multiplexed detection systems?

Implementing SRMS antibodies in multiplexed detection systems enables simultaneous analysis of multiple targets:

Multiplexed Detection Methodologies:

  • Multiplex Immunofluorescence/Immunohistochemistry:

    • Sequential staining with different primary antibodies including anti-SRMS

    • Use of spectrally distinct fluorophores or chromogens

    • Tyramide signal amplification for increased sensitivity

    • Computational unmixing of spectral overlap

    • Applications: Tissue microenvironment analysis, signaling pathway activation

  • Mass Cytometry (CyTOF):

    • Metal-conjugated SRMS antibodies (typically lanthanides)

    • Simultaneous detection of 40+ cellular markers

    • Single-cell resolution with minimal spillover

    • Integration with cell surface markers and functional readouts

    • Applications: Heterogeneity analysis in complex cell populations

  • Proximity-Based Multiplexed Detection:

    • Antibody-oligonucleotide conjugates for proximity extension assays

    • Proximity ligation assays for protein-protein interactions involving SRMS

    • Digital counting of molecular interactions

    • Applications: Protein interaction networks, pathway activation status

  • Multiplex Western Blotting:

    • Size-based separation followed by multiple antibody detection

    • Fluorescent secondary antibodies with distinct spectra

    • Sequential stripping and reprobing with SRMS and other antibodies

    • Applications: Signaling pathway analysis, post-translational modifications

Optimization Strategies for Multiplexed Detection:

  • Antibody Selection Criteria:

    • Species compatibility (avoid same-species primaries)

    • Cross-reactivity testing against all targets in the panel

    • Validation in multiplex settings (not just individually)

  • Technical Considerations:

    • Optimized antibody concentration for each target

    • Order of antibody application in sequential staining

    • Appropriate blocking between rounds of staining

    • Data normalization and analysis workflows

  • Quality Control for Multiplexed Assays:

    • Single-color controls for spectral compensation

    • Multi-color reference standards

    • Spike-in controls for quantification

    • Reproducibility assessment across batches

Multiplexed detection with SRMS antibodies provides contextual information about SRMS expression, activation, and function in relation to other cellular components, enabling systems-level analysis of its biological roles.

What are the considerations for using SRMS antibodies in therapeutic development research?

Using SRMS antibodies in therapeutic development research involves several specialized considerations:

Therapeutic Development Applications:

  • Target Validation Studies:

    • Correlation of SRMS expression with disease progression

    • Tissue-specific expression profiling using validated antibodies

    • Knockdown/knockout phenotype characterization

    • Patient stratification based on SRMS expression or activity

  • Mechanism of Action Studies:

    • Monitoring SRMS levels/activity during drug treatment

    • Pathway modulation assessment through phosphorylation status

    • Combination therapy effects on SRMS signaling networks

    • Resistance mechanism exploration in non-responding models

  • Biomarker Development:

    • Identification of SRMS as predictive/prognostic biomarker

    • Standardization of detection protocols for clinical application

    • Development of companion diagnostic assays

    • Correlation with other established biomarkers

  • Antibody-Drug Conjugate (ADC) Development:

    • Assessment of SRMS internalization dynamics

    • Epitope selection for optimal ADC delivery

    • Cytotoxic payload delivery efficiency studies

    • Off-target effects evaluation

Key Technical Considerations:

  • Regulatory and Standardization Requirements:

    • Clinical Laboratory Improvement Amendments (CLIA) validation

    • Reproducibility across different laboratories

    • Standardized protocols with defined cut-off values

    • Reference standard development and implementation

  • Clinical Sample Considerations:

    • Optimization for formalin-fixed paraffin-embedded (FFPE) tissues

    • Preanalytical variable control (fixation time, processing)

    • Decalcification effects on epitope preservation

    • Automated staining platform validation

  • Translation to Precision Medicine:

    • Integration with genomic/transcriptomic data

    • Machine learning approaches for image analysis

    • Digital pathology workflow implementation

    • Multi-omic data integration strategies

The application of SRMS antibodies in therapeutic development requires rigorous validation beyond research use, with particular attention to reproducibility, standardization, and clinical relevance of detection methods.

How might emerging antibody technologies enhance SRMS research in the future?

Emerging antibody technologies offer exciting possibilities for advancing SRMS research:

Next-Generation Antibody Technologies:

  • Recombinant Antibody Platforms:

    • Single-chain variable fragments (scFvs) targeting SRMS

    • Nanobodies (VHH) with enhanced tissue penetration

    • Bispecific antibodies targeting SRMS and effector cells/molecules

    • Benefits: Reduced batch-to-batch variation, defined specificity, renewable source

  • Spatially-Resolved Antibody-Based Detection:

    • Highly multiplexed imaging using DNA-barcoded antibodies

    • In situ sequencing with antibody-oligonucleotide conjugates

    • Spatial transcriptomics integrated with protein detection

    • Applications: Tissue microenvironment, subcellular localization, multi-omic integration

  • Dynamic Antibody-Based Biosensors:

    • FRET-based sensors using SRMS antibody fragments

    • Split-protein complementation assays for activity monitoring

    • Optogenetic integration for spatiotemporal control

    • Applications: Real-time monitoring of SRMS activity in living systems

  • AI-Enhanced Antibody Development:

    • Machine learning for epitope prediction and antibody design

    • Computational modeling of antibody-antigen interactions

    • Automated validation pipelines for high-throughput screening

    • Benefits: Reduced development time, enhanced specificity, optimized properties

Future Research Directions:

  • Single-Cell Analysis of SRMS Biology:

    • Integration with single-cell RNA sequencing

    • Mass cytometry for protein-level analysis

    • Spatial proteomics in tissue contexts

    • Applications: Cell heterogeneity, rare cell populations, microenvironment interactions

  • In Vivo Antibody-Based Imaging:

    • PET imaging with radiolabeled SRMS antibodies

    • Intravital microscopy with fluorescent antibody derivatives

    • Photoacoustic imaging for deep tissue visualization

    • Applications: Disease progression monitoring, therapeutic response assessment

  • Therapeutic Applications Building on ARM Technologies:

    • SRMS-targeted antibody recruiting molecules (ARMs)

    • Proteolysis targeting chimeras (PROTACs) with SRMS binding

    • Immunomodulatory antibody conjugates

    • Applications: Targeted protein degradation, immune redirection, combination therapies

The integration of these emerging technologies with established SRMS antibody applications will likely accelerate discovery in areas including cancer biology, developmental processes, and immune regulation, while enabling new therapeutic approaches targeting SRMS-dependent pathways.

What are the most critical considerations for ensuring reproducible research with SRMS antibodies?

Ensuring reproducibility in SRMS antibody research requires attention to several critical factors throughout the experimental process:

Critical Reproducibility Considerations:

  • Antibody Selection and Documentation:

    • Document complete antibody information (manufacturer, catalog number, lot number)

    • Perform independent validation regardless of manufacturer claims

    • Consider using recombinant antibodies for improved consistency

    • Maintain detailed records of antibody performance across applications

  • Experimental Design Practices:

    • Include appropriate positive and negative controls

    • Perform biological replicates (n≥3) and technical replicates

    • Blind analysis where possible to minimize bias

    • Pre-register experimental protocols when feasible

  • Standardized Protocols:

    • Develop detailed standard operating procedures (SOPs)

    • Control for variables including sample preparation, incubation conditions, and detection parameters

    • Calibrate instruments regularly and document settings

    • Implement quality control checkpoints throughout protocols

  • Data Analysis and Reporting:

    • Use appropriate statistical methods with justification

    • Report all data points, not just representative images

    • Provide access to raw data when possible

    • Include detailed methodological information in publications

  • Cross-Laboratory Validation:

    • Consider multi-site validation for critical findings

    • Participate in antibody validation initiatives

    • Share protocols and reagents to facilitate reproducibility

    • Engage with community standards for antibody reporting

By systematically addressing these considerations, researchers can enhance the reliability and reproducibility of SRMS antibody-based experiments, ultimately accelerating scientific progress through increased confidence in published findings and reduced resource expenditure on irreproducible results.

How can SRMS antibody research contribute to our understanding of disease mechanisms and therapeutic opportunities?

SRMS antibody research offers significant potential for advancing disease mechanisms understanding and therapeutic development:

Disease Mechanism Insights:

  • Signaling Pathway Elucidation:

    • Identification of SRMS-dependent phosphorylation events

    • Mapping of SRMS interactome in normal versus disease states

    • Temporal dynamics of SRMS activation during disease progression

    • Integration with other tyrosine kinase signaling networks

  • Expression Pattern Analysis:

    • Tissue-specific and cell type-specific SRMS distribution

    • Changes in SRMS expression during disease development

    • Correlation with clinical outcomes and disease subtypes

    • Single-cell resolution of heterogeneous expression patterns

  • Functional Studies:

    • SRMS inhibition or activation effects on cellular phenotypes

    • Genetic-pharmacologic correlation studies

    • Compensation mechanisms in SRMS-targeted interventions

    • Biomarker identification for disease stratification

Therapeutic Opportunity Development:

  • Target Validation:

    • Confirmation of SRMS as druggable target

    • Identification of critical domains for functional inhibition

    • Patient stratification markers for precision medicine

    • Mechanism-based combination therapy rationales

  • Advanced Therapeutic Approaches:

    • Antibody-drug conjugates targeting SRMS-expressing cells

    • Antibody recruiting molecules (ARMs) for immune-mediated responses

    • Proteolysis targeting chimeras (PROTACs) for SRMS degradation

    • Bifunctional degraders linking SRMS to E3 ligases

  • Companion Diagnostics:

    • Standardized SRMS detection for patient selection

    • Pharmacodynamic biomarkers for treatment monitoring

    • Resistance mechanism identification

    • Early response prediction markers

SRMS antibody research thus provides a foundation for translational advances by connecting molecular mechanisms to potential therapeutic interventions, enabling both deeper understanding of disease biology and more rational development of targeted treatments for conditions where SRMS plays a significant role.

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