Analytical Framework:
Tissue context: Evaluate STEAP4’s function in organ-specific microenvironments. For example, high STEAP4 in GC correlates with poor prognosis but may have opposing roles in prostate or metabolic diseases .
Immune contexture: Use tools like the ESTIMATE algorithm to quantify stromal (), immune (), and tumor purity scores () alongside STEAP4 expression .
Mechanistic studies: Conduct gain/loss-of-function experiments in GC cell lines to assess STEAP4’s impact on immune checkpoint genes (e.g., PD-L1) or cytokine secretion.
Methodological Answer:
Single-cell RNA sequencing: Profile STEAP4 expression in tumor-associated macrophages (TAMs) or CD8+ T cells from GC tissues.
Spatial transcriptomics: Map STEAP4 expression gradients relative to immune cell niches (e.g., tertiary lymphoid structures).
Correlation analysis: Leverage TIMER database results showing STEAP4’s association with B cells (), neutrophils (), and dendritic cells () .
| Immune Metric | Correlation Coefficient () | -Value | Source |
|---|---|---|---|
| Stromal Score | 0.43 | < 0.001 | |
| Immune Score | 0.29 | < 0.001 | |
| Dendritic Cell Infiltration | 0.28 | < 0.001 |
Methodological Recommendations:
Retrospective analysis: Correlate STEAP4 expression with PD-1/PD-L1 inhibitor efficacy in GC clinical trials.
Preclinical models: Use STEAP4-overexpressing GC organoids to test combinatorial therapies (e.g., anti-STEAP4 mAbs + anti-CTLA4).
Immune profiling: Apply CIBERSORT to deconvolute bulk RNA-seq data and identify STEAP4-linked immune subtypes .