SUGCT Antibody

Shipped with Ice Packs
In Stock

Description

Research Applications

The SUGCT antibody has been instrumental in:

  • Validating gene knockout models: Confirming loss of SUGCT protein in SugctKO mice kidneys and livers .

  • Assessing tissue-specific expression: Detecting higher SUGCT levels in mitochondria-rich tissues like kidney and liver .

  • Overexpression studies: Verifying SUGCT expression in GCDH-KO cell lines engineered to study GA1 pathology .

3.1. Role in Metabolic Disease

  • GA3 pathology: Loss of SUGCT disrupts mitochondrial lysine metabolism, leading to renal and hepatic lipid accumulation, inflammation, and obesity-like phenotypes in mice .

  • Therapeutic target: SUGCT inhibition reduces glutaryl-CoA accumulation in GA1 models, suggesting its potential as a drug target .

3.2. Mechanistic Insights

  • Gut microbiome interaction: SugctKO mice exhibit altered gut microbiota metabolites (e.g., acylcarnitines), exacerbated by high-lysine diets .

  • Inflammatory markers: Increased F4/80+ macrophages and interstitial inflammation in SugctKO kidneys .

Technical Limitations

  • Antibody availability: Discontinuation of NBP2-69820 complicates reproducibility .

  • Cross-reactivity: Specificity for human vs. murine SUGCT isoforms is not fully characterized.

Future Directions

  • Antibody redevelopment: New monoclonal antibodies are needed for advanced studies.

  • Therapeutic screening: The discontinued antibody’s role in identifying SUGCT inhibitors (e.g., valsartan) highlights its value in drug discovery pipelines.

Product Specs

Buffer
PBS with 0.02% Sodium Azide, 50% Glycerol, pH 7.3. Store at -20°C. Avoid freeze/thaw cycles.
Lead Time
Generally, we can ship the products within 1-3 business days after receiving your orders. Delivery time may vary depending on the purchasing method or location. Please consult your local distributors for specific delivery time information.
Synonyms
SUGCT antibody; C7orf10 antibody; DERP13 antibody; Succinate--hydroxymethylglutarate CoA-transferase antibody; EC 2.8.3.13 antibody; Dermal papilla-derived protein 13 antibody; SuccinylCoA:glutarate-CoA transferase antibody
Target Names
SUGCT
Uniprot No.

Target Background

Function
SUGCT catalyzes the succinyl-CoA-dependent conversion of glutarate to glutaryl-CoA. It can utilize various dicarboxylic acids as CoA acceptors, with the preferred ones being glutarate, succinate, adipate, and 3-hydroxymethylglutarate.
Gene References Into Functions
  1. Chromosome microarray analysis revealed a 125kb homozygous pathogenic deletion encompassing genes MPLKIP and SUGCT, previously unreported. This is the first documented case in Peru involving a novel contiguous gene deletion associated with Trichothiodystrophy type 4 and Glutaric aciduria type 3, identified through chromosome microarray analysis. PMID: 29421601
  2. C7orf10 encodes succinate-hydroxymethylglutarate CoA-transferase, the enzyme responsible for converting glutarate to glutaryl-CoA. PMID: 23893049
  3. Identified as a candidate disease gene for OXPHOS disorders through next-generation sequencing. PMID: 22277967
  4. Genetic mapping of GA3 to chromosome 7 and the identification of mutations in c7orf10 have been reported. PMID: 18926513
Database Links

HGNC: 16001

OMIM: 231690

KEGG: hsa:79783

UniGene: Hs.586313

Involvement In Disease
Glutaric aciduria 3 (GA3)
Protein Families
CaiB/BaiF CoA-transferase family
Subcellular Location
Mitochondrion.
Tissue Specificity
Highly expressed in kidney. Intermediate expression in liver, skeletal muscle and pancreas. Little to no expression detected in other tissues examined.

Q&A

What is SUGCT and why is it important in scientific research?

SUGCT (Succinate--hydroxymethylglutarate CoA-transferase) is a mitochondrial enzyme that catalyzes the succinyl-CoA-dependent conversion of glutarate to glutaryl-CoA. It plays a critical role in metabolic pathways supporting cell growth and survival, making it relevant for research on metabolic disorders, cancer, and neurodegenerative diseases . The enzyme can utilize various dicarboxylic acids as CoA acceptors, with preferences for glutarate, succinate, adipate, and 3-hydroxymethylglutarate . Recent research has identified SUGCT as a potentially important target in Glutaric Aciduria Type 1 (GA1), with the hypothesis that its inhibition could decrease neurotoxic metabolite buildup in this serious inborn error of metabolism . When designing experiments involving SUGCT, researchers should consider its mitochondrial localization and its role in amino acid metabolism and reactive oxygen species management.

What are the common applications for SUGCT antibodies?

SUGCT antibodies are versatile research tools applicable across multiple experimental platforms. The most validated applications include:

ApplicationRecommended DilutionSample TypesDetection Method
Western Blot1:200 - 1:2000Cell lysates, tissue extractsChemiluminescence or fluorescence detection
ELISAAs per manufacturer protocolProtein samplesColorimetric detection
ImmunohistochemistryVaries by antibodyFixed tissue sectionsChromogenic or fluorescent detection

For optimal results in Western blot applications, researchers should validate the appropriate dilution for their specific experimental conditions using positive control samples such as HepG2 cell lysates, mouse liver extracts, or rat kidney extracts . When performing immunohistochemistry, antigen retrieval methods should be optimized depending on the fixation method used. SUGCT antibodies enable researchers to effectively detect and analyze the enzyme in various cell types, making them essential for studies in metabolism, mitochondrial function, and oxidative stress responses .

What species reactivity do SUGCT antibodies typically exhibit?

Commercial SUGCT antibodies demonstrate variable cross-reactivity profiles. Based on available research reagents, many SUGCT antibodies show reactivity to human SUGCT protein, with some exhibiting cross-reactivity with mouse and rat orthologs . When selecting an antibody:

  • For human sample analysis, multiple validated options exist with confirmed specificity

  • For mouse models, verify the specific epitope recognition, as some antibodies recognize the human sequence corresponding to amino acids 1-250 of human SUGCT (NP_001180240.1)

  • For rat studies, fewer validated options exist, so preliminary validation experiments are strongly recommended

When working with less common model organisms, researchers should perform validation experiments to confirm cross-reactivity or consider custom antibody development against species-specific sequences. Epitope sequence alignment analysis between target species can help predict potential cross-reactivity before experimental validation.

How should SUGCT antibodies be stored and handled for optimal performance?

Proper storage and handling of SUGCT antibodies are critical for maintaining their performance and extending their usable lifespan. Based on manufacturer recommendations:

  • Long-term storage: Upon receipt, store antibodies at -20°C or -80°C to prevent degradation . Avoid repeated freeze-thaw cycles by aliquoting the antibody into single-use volumes.

  • Working solution preparation: When preparing dilutions, use sterile buffers and aseptic technique to prevent microbial contamination.

  • Buffer considerations: Most SUGCT antibodies are supplied in PBS with 0.02% sodium azide and 50% glycerol at pH 7.3 . This formulation helps maintain stability during freeze-thaw cycles.

  • Handling precautions: Sodium azide is toxic and can form explosive compounds with plumbing materials. Always flush with large volumes of water when disposing of solutions containing sodium azide.

  • Performance monitoring: Include positive controls in each experiment to verify antibody performance over time. Diminished signal intensity may indicate antibody degradation.

By following these storage and handling protocols, researchers can maximize the reliability and reproducibility of their experimental results using SUGCT antibodies.

How can SUGCT antibodies be utilized in studying metabolic disorders?

SUGCT antibodies serve as powerful tools for investigating metabolic disorders, particularly Glutaric Aciduria Type 1 (GA1), where SUGCT has been identified as a potential therapeutic target. When designing experiments to study metabolic disorders:

  • Establishing cellular models: SUGCT antibodies can verify protein expression levels in SUGCT-overexpressing cell lines and GCDH-knockout models created through techniques like CRISPR-Cas9 genome editing . This enables researchers to develop cellular models that recapitulate aspects of metabolic disorders.

  • Metabolic pathway analysis: By tracking SUGCT protein levels alongside metabolomic analyses, researchers can correlate enzyme expression with changes in metabolite profiles. This is particularly relevant when studying how SUGCT affects glutaryl-CoA levels in GA1 models .

  • Inhibitor screening validation: When identifying and validating novel SUGCT inhibitors such as valsartan and losartan carboxylic acid, antibodies confirm that observed phenotypic changes result from specific enzyme inhibition rather than off-target effects .

  • Tissue distribution studies: Immunohistochemistry with SUGCT antibodies can map expression patterns across different tissues, providing insights into the potential systemic impacts of metabolic disorders involving this enzyme.

When studying GA1 specifically, researchers should consider dual-labeling experiments that simultaneously track SUGCT and GCDH (Glutaryl-CoA Dehydrogenase) expression, as the interplay between these enzymes appears critical in disease pathophysiology .

What methodological considerations are important when using SUGCT antibodies in mitochondrial research?

When utilizing SUGCT antibodies for mitochondrial research, several methodological considerations are crucial for generating reliable and interpretable results:

  • Sample preparation protocols:

    • For optimal detection of mitochondrial SUGCT, use mitochondrial isolation kits specifically designed to preserve enzyme activity and protein integrity

    • Consider using differential centrifugation techniques to separate mitochondrial, cytosolic, and nuclear fractions

    • Include mitochondrial markers (e.g., TOMM20, COX IV) as controls to confirm fractionation quality

  • Fixation considerations for immunofluorescence:

    • Over-fixation can mask the SUGCT epitope in mitochondria

    • Brief fixation with 4% paraformaldehyde (10-15 minutes) followed by gentle permeabilization with 0.1-0.2% Triton X-100 often yields optimal results

    • Co-staining with MitoTracker or mitochondrial antibodies helps confirm subcellular localization

  • Background reduction strategies:

    • When analyzing tissues with high autofluorescence (like liver), consider using Sudan Black B treatment or spectral unmixing techniques

    • For western blotting, extended blocking (3% BSA in TBST for 2 hours) may reduce background signal

  • Functional correlation approaches:

    • Pair SUGCT immunodetection with functional assays measuring CoA-transferase activity

    • Consider measuring oxygen consumption rate (OCR) alongside SUGCT detection to correlate expression with mitochondrial function

These methodological refinements help ensure that observed signals genuinely represent mitochondrial SUGCT rather than artifacts or non-specific binding, which is particularly important when studying this enzyme's role in mitochondrial metabolism and oxidative stress response .

How can researchers validate SUGCT knockdown or knockout experimental models?

  • Genomic verification:

    • For CRISPR-Cas9 edited cell lines, perform targeted sequencing of the SUGCT locus to confirm editing events and identify potential indels

    • Use PCR-based genotyping to screen multiple clones for the desired modifications

    • For knockdown models, quantify target mRNA using qRT-PCR with primers spanning multiple exons

  • Protein expression analysis:

    • Western blotting with SUGCT antibodies serves as the gold standard for confirming protein reduction or absence

    • Use multiple antibodies targeting different epitopes when possible to ensure complete knockout validation

    • Include positive controls from wild-type cells or tissues alongside your experimental samples

  • Functional validation:

    • Measure CoA-transferase activity using biochemical assays to confirm functional consequences

    • Analyze metabolite profiles, particularly glutarate and glutaryl-CoA levels, to validate metabolic impacts

    • For SUGCT's role in GA1, assess the cell-based assay measuring functional activity through effects on glutaryl-CoA levels

  • Rescue experiments:

    • Re-express SUGCT in knockout cells using expression vectors containing the wild-type sequence

    • Confirm restoration of both protein expression and enzymatic function

    • Compare phenotypes between knockout, rescue, and control conditions

For stable cell line generation, researchers can follow the Flp-In system protocol used in recent SUGCT studies, which enables controlled integration of the SUGCT cDNA under a CMV promoter . Following transfection, hygromycin B selection helps isolate cells with stable integration, and collected cell pellets can be analyzed using SUGCT antibodies to confirm expression levels.

What is the role of SUGCT in inflammation and how can antibodies help elucidate this function?

Recent research has uncovered intriguing connections between SUGCT and inflammatory processes, particularly through its antisense transcript SUGCT-AS1. Researchers investigating this relationship can employ SUGCT antibodies alongside molecular biology techniques to:

  • Examine protein-RNA interactions:

    • Use RNA immunoprecipitation (RIP) with SUGCT antibodies to identify potential interactions between the protein and its antisense transcript or other regulatory RNAs

    • Combine with cross-linking techniques (CLIP) for higher specificity in detecting direct interactions

  • Study macrophage polarization effects:

    • In M0 and M1 macrophage models, use SUGCT antibodies to track protein expression changes following GapmeR-mediated knockdown of SUGCT-AS1

    • Correlate SUGCT protein levels with changes in pro-inflammatory cytokine production (IL-1β, IL-6)

    • Implement dual immunofluorescence to simultaneously visualize SUGCT and inflammatory markers in activated macrophages

  • Analyze vascular smooth muscle cell responses:

    • Utilize conditioned media experiments as described in the literature, where media from macrophages with manipulated SUGCT-AS1 levels is applied to vascular smooth muscle cells

    • Monitor SUGCT protein expression alongside contractility markers (TAGLN, CNN1, ACTA2) and pro-inflammatory genes (IL1B, IL6, PTGS2)

  • Investigate signaling pathway interactions:

    • Use phospho-specific antibodies alongside SUGCT antibodies to map potential relationships between SUGCT expression and inflammatory signaling pathways like NF-κB

    • Implement proximity ligation assays to detect protein-protein interactions between SUGCT and inflammatory mediators

These approaches can help elucidate the complex relationship between SUGCT and inflammatory processes, potentially revealing new therapeutic targets for inflammatory conditions while advancing our understanding of this enzyme's multifaceted roles beyond metabolism.

What structural considerations are important when using antibodies to study SUGCT protein interactions?

Understanding SUGCT's structure provides crucial context for antibody-based studies of its protein interactions and functional domains. Recent crystallographic data on human SUGCT offers valuable insights:

  • Epitope accessibility considerations:

    • SUGCT antibodies recognizing the N-terminal region (amino acids 1-250) may have differential access to their epitopes depending on protein conformation

    • The mitochondrial transit peptide (amino acids 1-37) might affect antibody binding in full-length versus mature protein studies

    • The recent mutation of residues Gln262 and Lys263 to alanine for crystallization purposes indicates a potentially flexible region that might impact antibody binding

  • Domain-specific antibody applications:

    • Researchers can strategically select antibodies targeting different domains to distinguish between:

      • The CoA-binding domain

      • Catalytic residues

      • Potential regulatory regions

    • Domain-specific antibodies can help map interaction surfaces with binding partners or inhibitors

  • Conformation-dependent considerations:

    • SUGCT undergoes conformational changes during catalysis as a type III CoA transferase

    • Some antibodies may preferentially recognize specific conformational states

    • For co-immunoprecipitation of protein complexes, native conditions that preserve protein structure may be necessary

  • Structural insights for inhibitor studies:

    • When validating small molecule inhibitors like valsartan and losartan carboxylic acid , antibodies can help confirm that structural changes or complex formation occur at the expected binding sites

    • Consider using epitope-specific antibodies that don't compete with inhibitor binding sites when studying drug-target interactions

For researchers investigating structure-function relationships, combining structural data with strategically chosen SUGCT antibodies enables more precise interrogation of this enzyme's interactions and regulatory mechanisms in both normal physiology and disease states.

What are common challenges in SUGCT detection and how can they be overcome?

Researchers working with SUGCT antibodies may encounter several technical challenges. Here are evidence-based solutions to common problems:

  • Low signal intensity in Western blots:

    • Increase protein loading (30-50 μg total protein)

    • Optimize primary antibody concentration (try 1:200 dilution for weak signals)

    • Extend primary antibody incubation to overnight at 4°C

    • Use enhanced chemiluminescence substrates specifically designed for low-abundance proteins

    • Consider membrane transfer conditions: switch to PVDF membranes with 0.2 μm pore size for better protein retention

  • High background in immunohistochemistry:

    • Implement more stringent blocking (5% BSA with 0.3% Triton X-100)

    • Include background-reducing agents like 0.1% Tween-20 in wash buffers

    • Titrate secondary antibody concentration to minimize non-specific binding

    • Use tissue-specific positive controls (e.g., HepG2, mouse liver, rat kidney) to establish optimal staining conditions

  • Inconsistent results between experiments:

    • Standardize sample preparation methods, particularly for mitochondrial proteins

    • Prepare single-use aliquots of antibodies to avoid freeze-thaw degradation

    • Include housekeeping protein controls appropriate for mitochondrial proteins (e.g., VDAC)

    • Implement quantitative western blotting techniques with internal loading controls

  • Cross-reactivity concerns:

    • Verify antibody specificity using SUGCT-knockout or knockdown samples as negative controls

    • Perform peptide competition assays with the immunogen sequence (amino acids 1-250 of human SUGCT)

    • Consider multiple antibodies targeting different epitopes to confirm findings

These optimization strategies help ensure reliable and reproducible results when detecting SUGCT in experimental systems, addressing the most common technical challenges encountered in antibody-based detection methods.

How should researchers select the appropriate SUGCT antibody for their specific research needs?

Selecting the optimal SUGCT antibody requires careful consideration of several factors to ensure experimental success:

  • Application-specific considerations:

    • For Western blotting: Select antibodies specifically validated for this application, with documented performance at detectable dilutions (1:200-1:2000)

    • For immunohistochemistry: Choose antibodies with demonstrated tissue penetration and epitope recognition in fixed samples

    • For co-immunoprecipitation: Consider antibodies with higher affinity (lower Kd) that can maintain binding during wash steps

  • Target region relevance:

    • N-terminal targeting (amino acids 1-250) : Useful for detecting full-length protein but may miss truncated variants

    • Central domain targeting: May provide better detection of processed mitochondrial SUGCT lacking the transit peptide

    • C-terminal targeting: Important for confirming full-length expression in recombinant systems

  • Species-specific requirements:

    • Human studies: Multiple validated options exist with confirmed specificity

    • Mouse/rat models: Verify cross-reactivity documentation and consider sequence homology in epitope regions

    • Multiple species comparisons: Select antibodies raised against highly conserved regions

  • Clonality considerations:

    • Polyclonal antibodies (like those described in the search results) : Offer broader epitope recognition but potential batch-to-batch variation

    • Monoclonal antibodies: Provide consistency between experiments but may be sensitive to epitope masking

  • Validation evidence assessment:

    • Prioritize antibodies with documented positive controls in relevant samples (HepG2, mouse liver, rat kidney)

    • Look for knockout/knockdown validation data demonstrating specificity

    • Consider antibodies used in peer-reviewed publications on SUGCT function

By systematically evaluating these factors against your specific experimental requirements, you can select the SUGCT antibody most likely to yield reliable and interpretable results for your research questions.

What controls are essential when using SUGCT antibodies in experimental systems?

Implementing appropriate controls is critical for ensuring the validity and interpretability of experiments using SUGCT antibodies:

  • Positive controls:

    • Cell lines: HepG2 cells express detectable levels of SUGCT and serve as excellent positive controls

    • Tissue samples: Mouse liver and rat kidney tissues demonstrate reliable SUGCT expression

    • Recombinant systems: Cells transfected with SUGCT expression constructs provide strong positive controls with defined expression levels

  • Negative controls:

    • Primary antibody omission: Controls for non-specific secondary antibody binding

    • Isotype controls: Rabbit IgG at equivalent concentration to test for non-specific binding

    • Genetic models: CRISPR-Cas9 SUGCT knockout cells provide definitive negative controls

    • Competition controls: Pre-incubation of antibody with immunizing peptide (amino acids 1-250 of human SUGCT) should abolish specific signal

  • Procedural controls:

    • Loading controls: For Western blotting, include housekeeping proteins appropriate to subcellular fraction (VDAC or COX IV for mitochondrial fractions)

    • Subcellular localization controls: Co-stain with established mitochondrial markers to confirm SUGCT localization

    • Cross-reactivity assessment: Test the antibody on samples known to lack SUGCT expression

  • Quantification controls:

    • Standard curves: When performing quantitative analyses, include dilution series of positive control samples

    • Technical replicates: Run multiple technical replicates to establish assay precision

    • Biological replicates: Use independent biological samples to account for natural variation

Implementing these comprehensive controls enables confident interpretation of experimental results, distinguishing genuine SUGCT-specific signals from technical artifacts or non-specific binding events.

How are SUGCT antibodies contributing to research on potential therapeutics for Glutaric Aciduria Type 1?

SUGCT antibodies are playing a pivotal role in developing novel therapeutic approaches for Glutaric Aciduria Type 1 (GA1), a serious inborn error of metabolism currently lacking pharmacological treatments. These antibodies enable several critical research applications:

  • Target validation studies:

    • Western blotting with SUGCT antibodies confirms expression levels in experimental models designed to test the hypothesis that SUGCT inhibition decreases neurotoxic glutaryl-CoA accumulation in GA1

    • Antibody-based detection helps validate the cellular models used for drug screening by confirming SUGCT overexpression in stable cell lines

  • Inhibitor discovery and validation:

    • After identifying potential SUGCT inhibitors (such as valsartan and losartan carboxylic acid) , antibodies help confirm that observed effects are mediated through interaction with SUGCT rather than off-target mechanisms

    • Antibodies enable researchers to correlate inhibitor binding with changes in SUGCT protein levels, post-translational modifications, or subcellular localization

  • Mechanism of action studies:

    • By combining SUGCT antibodies with metabolomic analyses, researchers can establish how manipulating this enzyme affects the broader metabolic pathways dysregulated in GA1

    • Immunoprecipitation with SUGCT antibodies followed by mass spectrometry can identify protein-protein interactions that might be therapeutically targetable

  • Translational research applications:

    • Immunohistochemistry using SUGCT antibodies helps map expression patterns across different neural tissues, informing targeted delivery strategies for potential therapeutics

    • SUGCT antibodies enable monitoring of enzyme levels in response to experimental treatments in both cellular and animal models

These antibody-dependent approaches are accelerating progress toward developing the first pharmacological interventions for GA1, potentially transforming management of this serious metabolic disorder through inhibition of SUGCT .

What emerging techniques are enhancing the utility of SUGCT antibodies in advanced research?

Recent methodological advances are expanding the research applications of SUGCT antibodies beyond traditional techniques:

  • Advanced imaging approaches:

    • Super-resolution microscopy (STORM, PALM) with SUGCT antibodies enables visualization of the enzyme's precise submitochondrial localization

    • Live-cell imaging using cell-permeable nanobodies derived from SUGCT antibodies allows real-time tracking of enzyme dynamics

    • Correlative light and electron microscopy (CLEM) combines immunofluorescence with ultrastructural analysis, placing SUGCT in its precise subcellular context

  • Single-cell analysis techniques:

    • Mass cytometry (CyTOF) using metal-conjugated SUGCT antibodies permits high-dimensional analysis of expression across heterogeneous cell populations

    • Single-cell western blotting enables researchers to quantify SUGCT expression variability within population subsets

    • In situ hybridization combined with immunofluorescence correlates SUGCT mRNA with protein levels at single-cell resolution

  • Protein-protein interaction mapping:

    • Proximity labeling techniques (BioID, APEX) using SUGCT fusion proteins identify interaction partners in native cellular contexts

    • Antibody-based proximity ligation assays detect and quantify interactions between SUGCT and other proteins in fixed cells or tissues

    • Förster resonance energy transfer (FRET) between labeled antibodies reveals dynamic interactions in living cells

  • High-throughput screening applications:

    • Automated immunofluorescence platforms enable large-scale screening of compounds affecting SUGCT expression or localization

    • Cell-based assays for SUGCT activity combined with high-content imaging allow correlation between enzyme inhibition and phenotypic outcomes

These emerging techniques, when combined with high-quality SUGCT antibodies, provide researchers with unprecedented capabilities to investigate this enzyme's role in normal physiology and disease states, particularly its potential as a therapeutic target in Glutaric Aciduria Type 1 .

How can SUGCT antibodies be integrated into multi-omics research approaches?

Integrating SUGCT antibodies into multi-omics research frameworks enables comprehensive characterization of this enzyme's role within broader biological systems:

  • Proteomics integration:

    • Immunoprecipitation with SUGCT antibodies followed by mass spectrometry (IP-MS) identifies interaction partners and post-translational modifications

    • Reverse-phase protein arrays using SUGCT antibodies enable high-throughput quantification across multiple samples

    • Targeted proteomics approaches using antibody-enriched samples increase detection sensitivity for low-abundance SUGCT peptides

  • Metabolomics correlation:

    • Parallel analysis of SUGCT protein levels (via antibody-based methods) and metabolite profiles creates integrated maps of enzyme-metabolite relationships

    • For GA1 research, correlating SUGCT levels with glutaryl-CoA and related metabolites provides mechanistic insights into potential therapeutic interventions

    • Statistical modeling of antibody-quantified SUGCT expression and metabolomic data can identify novel regulatory relationships

  • Transcriptomics integration:

    • Combined analysis of SUGCT protein (via antibodies) and mRNA levels (via RNA-seq) reveals post-transcriptional regulation mechanisms

    • Investigation of relationships between SUGCT and its antisense transcript SUGCT-AS1 becomes possible through integrated antibody and RNA analyses

    • Single-cell multi-omics approaches combining antibody detection with transcriptomics identify cell subpopulations with distinct SUGCT regulation

  • Functional genomics applications:

    • CRISPR screens paired with SUGCT antibody detection identify genes affecting SUGCT expression, localization, or function

    • In genetic disease models like GA1, antibody-based SUGCT quantification in genetically modified cells helps characterize compensatory mechanisms

    • Spatial transcriptomics combined with immunohistochemistry maps SUGCT expression patterns in tissue contexts

These integrated approaches provide systems-level insights into SUGCT biology, moving beyond reductionist perspectives to understand how this enzyme functions within complex metabolic networks and how its dysregulation contributes to disease states like Glutaric Aciduria Type 1 .

What are the optimal protocols for using SUGCT antibodies in Western blotting applications?

The following protocol has been optimized for SUGCT detection in Western blotting applications based on published research methodologies:

Sample Preparation:

  • Extract total protein from cells or tissues using RIPA buffer supplemented with protease inhibitors

  • For mitochondrial enrichment, consider differential centrifugation protocols

  • Determine protein concentration using Bradford or BCA assay

  • Prepare samples in Laemmli buffer with reducing agent (50-100 μg total protein recommended)

  • Heat samples at 95°C for 5 minutes before loading

Gel Electrophoresis and Transfer:

  • Resolve proteins on 10-12% SDS-PAGE gels

  • Transfer to PVDF membrane (0.45 μm pore size) using wet transfer system

    • Transfer conditions: 100V for 60-90 minutes in cold transfer buffer containing 20% methanol

  • Confirm transfer efficiency with reversible protein stain

Antibody Incubation:

  • Block membrane in 5% non-fat dry milk or 3-5% BSA in TBST for 1 hour at room temperature

  • Incubate with primary SUGCT antibody at recommended dilution (1:200-1:2000) in blocking buffer

    • Optimal conditions: 1:500 dilution, overnight at 4°C with gentle agitation

  • Wash 3 × 10 minutes with TBST

  • Incubate with HRP-conjugated secondary antibody (anti-rabbit IgG) at 1:5000-1:10000 dilution for 1 hour at room temperature

  • Wash 3 × 10 minutes with TBST

Detection and Analysis:

  • Apply chemiluminescent substrate and image using digital imaging system

  • Expected molecular weight: ~48 kDa for mature SUGCT protein

  • Include positive controls: HepG2 cell lysate, mouse liver extract, or rat kidney extract

  • For quantification, normalize to appropriate loading controls (β-actin for total lysates, VDAC for mitochondrial fractions)

Troubleshooting Tips:

  • For weak signals: Increase protein loading to 50-75 μg and optimize antibody concentration

  • For high background: Extend blocking time and include 0.1% Tween-20 in antibody dilution buffer

  • For non-specific bands: Validate with SUGCT knockdown samples as negative controls

This protocol has been optimized based on successful SUGCT detection in published research and incorporates best practices for mitochondrial protein detection.

What resources are available for researchers studying SUGCT structure and function?

Researchers investigating SUGCT can access a wealth of resources spanning structural, functional, and reagent domains:

  • Structural resources:

    • Protein structure data: The recently solved structure of human SUGCT, the first eukaryotic structure of a type III CoA transferase, provides valuable insights for structure-function studies

    • Protein modeling tools: Online resources like AlphaFold and SWISS-MODEL can generate structural predictions for species-specific SUGCT variants

    • Domain prediction tools: InterPro and PFAM databases help identify functional domains within SUGCT sequence

  • Genetic and genomic resources:

    • Expression databases: Human Protein Atlas and GTEx provide tissue-specific expression data for SUGCT

    • Genetic variation: gnomAD database contains information on SUGCT variants, including the rs137852860 variant associated with GA3 in Amish populations

    • Cellular models: Flp-In 293 cell lines with stable SUGCT expression and GCDH knockout have been developed and characterized

  • Functional assay resources:

    • Enzyme activity assays: Published high-throughput enzyme assays for SUGCT activity can be implemented in research laboratories

    • Cell-based assays: Validated cell-based systems for measuring SUGCT function in the context of GCDH deficiency

    • Metabolite analysis: LC-MS/MS methods for detecting glutaryl-CoA and related metabolites relevant to SUGCT function

  • Reagent resources:

    • Antibodies: Multiple validated SUGCT antibodies with defined applications and species reactivity

    • Recombinant protein: Expression and purification protocols for active human SUGCT suitable for enzymatic and structural studies

    • Inhibitors: Identified compounds like valsartan and losartan carboxylic acid that inhibit SUGCT activity

  • Disease model resources:

    • Patient-derived samples: Biobanks may contain samples from individuals with GA1 and GA3 for translational research

    • Mouse models: SUGCT-deficient mice have been characterized and do not display significant clinical phenotypes

These diverse resources enable comprehensive investigation of SUGCT biology, from basic structural and functional characterization to translational research on metabolic disorders like Glutaric Aciduria Type 1 and Type 3.

What are the future directions for SUGCT antibody applications in metabolic disease research?

The application of SUGCT antibodies in metabolic disease research is poised for significant expansion, with several promising future directions:

  • Therapeutic development monitoring:

    • As SUGCT inhibitor development progresses for treating Glutaric Aciduria Type 1, antibodies will be essential for monitoring target engagement in preclinical and clinical samples

    • Companion diagnostic applications may emerge, using SUGCT antibodies to identify patients most likely to benefit from targeted therapies

    • Pharmacodynamic biomarker development could incorporate antibody-based measurements of SUGCT levels or post-translational modifications

  • Expanded disease relevance:

    • Beyond GA1, SUGCT's role in broader metabolic networks suggests potential relevance to other disorders

    • The enzyme's involvement in reactive oxygen species metabolism indicates applications in oxidative stress-related conditions

    • The connection between SUGCT-AS1 and inflammatory processes suggests investigating SUGCT protein levels in inflammatory disorders

  • Advanced technological integration:

    • Spatial proteomics using multiplexed antibody imaging will map SUGCT distribution across tissues and disease states

    • Microfluidic antibody arrays will enable high-throughput screening for factors affecting SUGCT expression

    • AI-assisted image analysis of SUGCT immunostaining patterns may reveal subtle disease-associated alterations

  • Personalized medicine applications:

    • SUGCT antibodies could help stratify patients with metabolic disorders based on enzyme expression patterns

    • Post-translational modification-specific antibodies might identify activated or inhibited forms of SUGCT with disease relevance

    • Monitoring SUGCT levels during therapeutic interventions could guide personalized treatment adjustments

These future applications highlight the continuing importance of well-characterized, specific SUGCT antibodies in advancing our understanding of metabolic disease mechanisms and developing novel therapeutic approaches, particularly for rare disorders like Glutaric Aciduria Type 1 where effective treatments remain an urgent unmet need .

Quick Inquiry

Personal Email Detected
Please use an institutional or corporate email address for inquiries. Personal email accounts ( such as Gmail, Yahoo, and Outlook) are not accepted. *
© Copyright 2025 TheBiotek. All Rights Reserved.