hsdS Antibody

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Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
hsdS antibody; hss antibody; b4348 antibody; JW4311 antibody; Type-1 restriction enzyme EcoKI specificity protein antibody; S.EcoKI antibody; Type I restriction enzyme EcoKI specificity protein antibody; S protein antibody
Target Names
hsdS
Uniprot No.

Target Background

Function
The M and S subunits of the EcoKI enzyme combine to form a methyltransferase (MTase) that modifies two adenine residues within complementary strands of a specific DNA recognition sequence. In the presence of the R subunit, the complex can also function as an endonuclease, binding to the same target sequence but cleaving the DNA at a location distant from this site. The enzymatic activity (methylation or cleavage) is determined by the methylation status of the target sequence. When the target site is unmethylated, DNA cleavage occurs. When the target site is hemimethylated, the complex acts as a maintenance MTase, modifying the DNA to ensure both strands become fully methylated. The S subunit determines the DNA sequence specificity. The EcoKI enzyme recognizes the sequence 5'-AACN(6)GTGC-3'.
Database Links

KEGG: ecj:JW4311

STRING: 316407.85677088

Protein Families
Type-I restriction system S methylase family

Q&A

What are hydroxysteroid dehydrogenase (HSD) antibodies and what specific types are most relevant for research?

Hydroxysteroid dehydrogenase antibodies are immunological reagents that specifically recognize enzymes involved in steroid metabolism. The most common types include antibodies against HSD17B1 (17 beta-hydroxysteroid dehydrogenase type 1) and HSD17B7 (17 beta-hydroxysteroid dehydrogenase 7). HSD17B1 is a 33-34 kDa member of the short chain dehydrogenase/reductase (SDR) family detected at approximately 35 kDa in Western blot analyses . HSD17B7, with a molecular weight of approximately 33 kDa (predicted at 38 kDa), functions in both estrogen biosynthesis by converting weak estrogen to potent estradiol and in cholesterol biosynthesis through the conversion of zymosterol from lanosterol .

For research applications, it's critical to select antibodies with validated specificity for your target HSD enzyme and appropriate cross-reactivity with your species of interest. For example, some HSD17B7 antibodies have confirmed reactivity across rat, mouse, human, cow, and hamster samples .

What are the optimal applications and detection methods for HSD antibodies?

HSD antibodies can be utilized across multiple experimental techniques with varying dilution requirements:

ApplicationRecommended DilutionDetection SystemNotes
Western Blot1:10,000 for HSD17B7 HRP-conjugated secondary antibodyCan detect bands at approximately 35-40 kDa
Immunohistochemistry1:250 for HSD17B7 , 10 μg/mL for HSD17B1 DAB staining/HRP Polymer systemsEffective for tissue localization studies
ELISAVaries by antibodyHRP-conjugated secondary with TMB substrateUseful for quantitative analyses
Simple Western2.5 μg/mL for HSD17B1 HRP-conjugated secondary antibodyAutomated capillary-based immunodetection

For Western blotting, membrane preparation typically requires reducing conditions using appropriate buffer systems such as Immunoblot Buffer Group 1 for HSD17B1 detection . When performing IHC, successful visualization has been achieved using DAB (brown) counterstained with hematoxylin (blue), with specific staining localized to the cytoplasm in neurons for HSD17B1 .

How should samples be prepared for optimal HSD antibody detection?

Sample preparation varies by detection method and target tissue:

For tissue samples intended for immunohistochemistry, immersion fixation with paraformaldehyde followed by paraffin embedding has been demonstrated effective for HSD17B1 detection in human Alzheimer's brain samples . The protocol typically involves antigen retrieval, followed by primary antibody incubation (typically 1 hour at room temperature or overnight at 4°C), and subsequent detection with an appropriate visualization system.

For protein extracts for Western blotting, tissues with known high expression of the target HSD (such as placenta for HSD17B1 or corpus luteum for HSD17B7) should be homogenized in appropriate lysis buffers containing protease inhibitors . For HSD17B7 specifically, microsomal fractions purified from pregnant rat corpus luteum have served as effective immunogens and positive controls .

What controls should be incorporated in experiments using HSD antibodies?

Proper experimental controls are essential for valid interpretation of results:

  • Positive tissue controls: Human placenta tissue has been validated as a positive control for HSD17B1 antibody detection . For HSD17B7, corpora lutea samples are recommended due to their high expression of this enzyme .

  • Negative controls: Include secondary-antibody-only controls to evaluate non-specific binding, and when possible, utilize tissues from knockout models or those known to lack expression of the target protein.

  • Loading controls: For Western blot applications, include appropriate housekeeping proteins matched to your sample type.

  • Dilution series: When establishing a new protocol, testing a dilution series of the antibody (as demonstrated in the generation of HSD17B7 antibodies) helps determine optimal concentration for specific applications .

How can researchers troubleshoot non-specific binding when using HSD antibodies?

Non-specific binding can significantly impair experimental outcomes. Methodological approaches to address this issue include:

  • Antibody validation: Confirm antibody specificity using recombinant proteins expressed in bacterial systems, as performed for HSD17B7 . The expression of His-tagged HSD17B7 in bacteria with IPTG induction, followed by protein purification on columns, provides material for antibody validation through Western blotting with serial dilutions from different bleeds .

  • Blocking optimization: Test different blocking reagents (BSA, milk, serum) at various concentrations and durations. For ELISA applications with HSD antibodies, blocking followed by serial dilutions of purified antibodies has proven effective .

  • Buffer modifications: Adjusting salt concentrations or adding detergents can reduce non-specific interactions. For immunohistochemistry applications, buffer formulations such as those used with VisUCyte HRP Polymer Detection Reagents have demonstrated efficacy for HSD17B1 detection in complex tissues like human Alzheimer's brain .

  • Pre-adsorption controls: Pre-incubating antibodies with purified target protein can confirm specificity by eliminating legitimate binding in parallel assays.

  • Immunoprecipitation validation: As performed for HSD17B7, immunoprecipitation of the target protein from tissues known to express it (like luteal HSD17B7) provides additional evidence of antibody specificity .

What are the challenges in detecting HSD enzymes in neurodegenerative disease models?

Recent studies have revealed the presence of hydroxysteroid dehydrogenases in neurological tissues, presenting unique research opportunities and challenges:

HSD17B1 has been successfully detected in immersion-fixed paraffin-embedded sections of human Alzheimer's brain using sheep anti-human HSD17B1 antibody (10 μg/mL) with HRP polymer detection systems . Specific staining was localized to the cytoplasm in neurons, suggesting potential roles in neurosteroid metabolism within the central nervous system .

Key methodological considerations for neurological tissue analysis include:

  • Fixation protocols: Optimization of fixation duration and conditions is critical for preserving antigenicity while maintaining tissue architecture.

  • Antigen retrieval: Neurodegenerative tissues often contain protein aggregates requiring specialized antigen retrieval methods.

  • Background reduction: Neurological tissues frequently exhibit high background due to lipofuscin autofluorescence, necessitating specific blocking steps or use of non-fluorescent detection systems like DAB.

  • Co-localization studies: Combining HSD antibody detection with markers of specific neuronal or glial populations provides valuable information on cell-specific expression patterns.

How can binding kinetics and affinity measurements enhance HSD antibody characterization?

Advanced biophysical techniques can provide crucial information about antibody performance:

Surface Plasmon Resonance (SPR) represents a sophisticated approach for determining binding kinetics. The methodology involves:

  • Sensor preparation by activating the chip surface with N-hydroxysuccinimide and N-ethyl-N-(3-diethylaminopropyl) carbodiimide (7-minute treatment) .

  • Coating target HSD proteins at approximately 50 μg/mL in sodium acetate buffer onto the activated cell, with an adjacent blank cell serving as reference .

  • Blocking with ethanolamine HCl (pH 8.5) to prevent non-specific binding .

  • Measuring interactions by flowing HBS buffer (10 mM HEPES, 150 mM NaCl, 3 mM EDTA) at 30 μL/minute for baseline acquisition (100 seconds), followed by injection of serially diluted antibody at the same flow rate .

  • Calculating affinity constants where Kd is determined from the ratio of koff to kon rates .

This approach enables precise quantification of antibody-antigen interactions, facilitating selection of optimal antibodies for specific applications.

What considerations are important when designing cross-species studies with HSD antibodies?

Cross-species reactivity is a critical factor in comparative studies:

For HSD17B7 antibodies, reactivity has been confirmed across rat, mouse, human, cow, and hamster samples . This broad cross-reactivity makes these antibodies particularly valuable for comparative studies. When designing multi-species experiments:

  • Epitope conservation: Analyze sequence homology of the target protein across species. The immunogen used for HSD17B7 antibody generation (microsomal fractions from rat corpus luteum) produced antibodies reactive across multiple mammalian species .

  • Validation in each species: Even with predicted cross-reactivity, empirical validation through Western blotting or immunohistochemistry on samples from each species is essential.

  • Species-specific controls: Include positive and negative controls from each species under investigation.

  • Optimization of detection parameters: Adjustments to antibody concentration, incubation conditions, and detection systems may be necessary for optimal results across species.

How should researchers approach antibody selection for studying HSD enzyme interactions with other proteins?

When investigating protein-protein interactions involving HSD enzymes:

  • Epitope accessibility: Select antibodies targeting epitopes unlikely to be obscured in protein complexes. For immunoprecipitation studies of luteal HSD17B7, antibodies capable of pulling down the native protein from complex tissue extracts have been developed .

  • Antibody compatibility: For co-immunoprecipitation or co-localization studies, ensure compatible species origins of primary antibodies or use directly conjugated antibodies.

  • Validation with recombinant systems: Test antibody performance in systems with controlled expression of interaction partners, such as the bacterial expression system used for His-tagged HSD17B7 .

  • Sequential immunoprecipitation: For complex interaction networks, consider sequential immunoprecipitation approaches to isolate specific subcomplexes.

What methodological approaches are recommended for monitoring HSD expression changes in disease progression studies?

Longitudinal studies of HSD enzyme expression in disease models require careful methodological planning:

  • Quantification standards: Include recombinant protein standards or consistently prepared positive control samples across all experimental timepoints to enable accurate quantitative comparisons.

  • Normalization strategy: Select appropriate housekeeping proteins or total protein staining methods that remain stable under your experimental conditions.

  • Digital image analysis: Implement standardized image acquisition and analysis protocols for immunohistochemistry, such as those used for staining brain and spinal cord sections in the Target ALS Post-mortem Core .

  • Multi-method validation: Confirm expression changes using orthogonal techniques (e.g., validate immunohistochemistry findings with Western blot or qPCR).

  • Tissue preservation: For long-term studies, establish standardized tissue preservation protocols to minimize variability in antibody performance across timepoints.

How can multispecific antibody technologies be applied to HSD research?

Recent advances in multispecific antibody engineering offer new possibilities for HSD research:

Trispecific antibody technology, as demonstrated in other fields like HIV-1 research, involves engineering a single antibody molecule capable of simultaneously binding multiple independent targets . Applied to HSD research, this could enable:

  • Simultaneous detection of multiple HSD isoforms to understand their relative distributions and potential functional interactions.

  • Co-localization of HSD enzymes with their substrates and products to provide insights into metabolic pathway compartmentalization.

  • Increased specificity through avidity effects when targeting HSD enzymes with highly conserved structures.

Engineering approaches similar to those used for trispecific antibodies could involve:

  • Creating DVD-Ig format antibodies with variable domains connected via G4S linkers .

  • Fusing scFv fragments to the N or C terminus of full IgG molecules .

  • Co-transfection of plasmids encoding modified heavy and light chains in expression systems like HEK293F cells .

What considerations are important when developing tissue microarrays for high-throughput HSD antibody validation?

Tissue microarrays (TMAs) represent a powerful approach for antibody validation across multiple samples:

  • Tissue selection: Include tissues with known high expression (placenta for HSD17B1, corpus luteum for HSD17B7) , moderate expression, and negative controls.

  • Sample orientation: Maintain consistent orientation and organize samples systematically to facilitate automated image analysis.

  • Validation controls: Include on-array controls such as recombinant protein spots or cell lines with controlled expression levels.

  • Standardized protocols: Develop rigorous staining protocols with optimized antibody concentrations (e.g., 10 μg/mL for HSD17B1 in IHC) and detection systems.

  • Digital pathology integration: Implement scanning and analysis systems similar to those used by the Target ALS Post-mortem Core, which digitized images of stained sections for accessibility through data repositories .

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