TIMP3 Antibody, FITC conjugated

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Description

Definition and Overview of TIMP3 Antibody, FITC Conjugated

TIMP3 Antibody, FITC conjugated is a fluorescently labeled immunoglobulin designed to detect and visualize tissue inhibitor of metalloproteinases-3 (TIMP3) in biological samples. TIMP3 is a glycoprotein inhibitor of matrix metalloproteinases (MMPs) and plays critical roles in regulating extracellular matrix remodeling, angiogenesis, and apoptosis . The FITC (fluorescein isothiocyanate) conjugation enables fluorescence-based detection in applications such as immunofluorescence microscopy, flow cytometry, and Western blotting.

Antibody Structure

  • Isotype: IgG (monoclonal or polyclonal)

  • Immunogen: Recombinant human TIMP3 protein (typically residues 30–208)

  • Conjugation: FITC dye attached to antibody via chemical cross-linking, enabling excitation at 499 nm and emission at 515 nm

Key Functions

  1. Target Binding: Specifically recognizes TIMP3 protein, enabling detection in cells or tissues .

  2. Fluorescence Imaging: FITC allows visualization of TIMP3 localization in live or fixed cells via microscopy or flow cytometry .

  3. Research Applications: Used to study TIMP3’s role in diseases like diabetic retinopathy, cancer, and myocardial infarction .

Common Techniques

ApplicationPurposeSources
ImmunofluorescenceLocalization of TIMP3 in cell membranes or extracellular matrix
Western BlotDetection of TIMP3 protein levels in cell lysates or tissue extracts
Flow CytometryQuantification of TIMP3 expression in cell populations
ELISAMeasurement of TIMP3 concentrations in biological fluids

Research Insights

  • Angiogenesis Regulation: TIMP3 antibodies help study TIMP3’s inhibition of VEGF receptor-2 (KDR) signaling, which suppresses endothelial cell migration and tube formation .

  • Apoptosis Mechanisms: FITC-conjugated TIMP3 antibodies aid in detecting caspase-independent apoptosis pathways linked to focal adhesion kinase (FAK) disruption .

  • Cardiac Repair: Used to assess TIMP3’s role in promoting angiogenesis and reducing myocardial damage post-infarction .

Table 1: TIMP3 Antibody, FITC Conjugated Products

SupplierHostClonalityConjugationApplicationsReactivity
Abcam (ab276134)RabbitMonoclonalFITCICC/IF, WB, Flow CytometryHuman
Abbexa (OACA01818)RabbitPolyclonalFITCWB, ELISAHuman
Cepham Life SciencesRabbitPolyclonalFITCELISAHuman
Aviva Systems BiologyRabbitPolyclonalFITCWB, IHCHuman
Biocompare (various)VariesVariesFITCWB, ICC, IHCHuman, Mouse, Rat

TIMP3 in Diabetic Retinopathy

FITC-conjugated TIMP3 antibodies demonstrated reduced TIMP3 expression in hyperglycemia-induced inflammation. TIMP3 suppressed TNF-α/VEGF-mediated endothelial cell adhesion and migration, highlighting its therapeutic potential in diabetic retinopathy .

Myocardial Infarction (MI)

Overexpression of TIMP3 improved post-MI angiogenesis by enhancing endothelial cell proliferation and preserving microvascular density. FITC-labeled TIMP3 antibodies enabled visualization of TIMP3’s role in promoting collateral coronary formation .

Cancer Research

TIMP3 antibodies revealed its anti-angiogenic effects by inhibiting MMPs and VEGF signaling. Studies using TIMP3 overexpression showed reduced tumor vascularity and apoptosis in endothelial cells, independent of caspase activation .

Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
We typically dispatch products within 1-3 business days after receiving your order. Delivery timelines may vary depending on the purchasing method or location. For specific delivery timeframes, please consult your local distributor.
Synonyms
HSMRK222 antibody; K222 antibody; K222TA2 antibody; Metalloproteinase inhibitor 3 antibody; MIG 5 protein antibody; MIG5 protein antibody; Protein MIG 5 antibody; Protein MIG-5 antibody; SFD antibody; Sorsby fundus dystrophy pseudoinflammatory antibody; TIMP 3 antibody; TIMP metallopeptidase inhibitor 3 antibody; TIMP-3 antibody; TIMP3 antibody; TIMP3_HUMAN antibody; Tissue Inhibitor of Metalloproteinase 3 antibody; Tissue inhibitor of metalloproteinases 3 antibody; Tissue inhibitor of metalloproteinases3 antibody
Target Names
TIMP3
Uniprot No.

Target Background

Function
TIMP3 (Tissue Inhibitor of Metalloproteinase-3) complexes with metalloproteinases, such as collagenases, and irreversibly inactivates them by binding to their catalytic zinc cofactor. This interaction plays a crucial role in regulating extracellular matrix remodeling and tissue repair. TIMP3 may be involved in a tissue-specific acute response to remodeling stimuli. It has been documented to act on MMP-1, MMP-2, MMP-3, MMP-7, MMP-9, MMP-13, MMP-14, and MMP-15.
Gene References Into Functions
  1. Genetic variations in the TIMP-3 gene might contribute to individual differences in mixture plaque susceptibility in the Han Chinese population. PMID: 29498555
  2. TIMP3 methylation serves as a marker for TN tumors. Notably, research has revealed that TIMP3 promoter methylation is an epigenetic marker for BRCA1ness tumors. PMID: 29524167
  3. As a novel CLOCK-dependent diurnal gene, TIMP3 inhibits the expression of inflammatory cytokines that are upregulated by UV irradiation in human keratinocytes. PMID: 29180440
  4. miR-21-5p mediates apoptosis by targeting PTEN and TIMP3. PMID: 29393355
  5. Initial studies indicate that baseline MMP3 and TIMP3 concentrations are associated with patient survival and disease-free time. PMID: 29304854
  6. TIMP-3 mRNA expression levels demonstrate a positive correlation with levels of miR-21 in in situ breast carcinomas and a negative correlation in progesterone receptor-positive invasive breast carcinomas. PMID: 28935174
  7. Sphingosine-1-phosphate inhibited cell migration and MMP-2 expression through the upregulation of TIMP-3 expression in human chondrosarcoma cells. PMID: 28672103
  8. Utilizing global proteomic profiling of brain leptomeningeal arteries, a study revealed that clusterin and TIMP-3 levels increase in leptomeningeal arteries affected by cerebral amyloid angiopathy. PMID: 27543695
  9. This research represents the first report of a syndromic Sorsby fundus dystrophy in line with the mouse model, uncovering the role of TIMP3 in human lung morphogenesis and functions. PMID: 27601084
  10. Collectively, these results demonstrated that IL-32alpha upregulates the atheroprotective genes Timp3 and Reck by downregulating microRNA-205 through regulation of the Rprd2-Dgcr8/Ddx5-Dicer1 biogenesis pathway. PMID: 28740544
  11. MMP-13 might play a role in the physiological turnover of cartilage extracellular matrix. LRP1 serves as a key modulator of extracellular levels of MMP-13, and its internalization is independent of ADAMTS-4, -5, and TIMP-3 levels. PMID: 27084377
  12. Research indicates that KDM1A promotes cancer metastasis in non-small cell lung cancer cells by repressing TIMP3 expression. PMID: 27058897
  13. Investigations have explored the interaction between TIMP3 and LRP1 using a synthetic analog of the LRP1 receptor. PMID: 27476612
  14. These findings implicate TIMP3 as a modulator of cell surface GHR abundance and the ability of GH to promote cellular signaling. PMID: 27075707
  15. Native glycosaminoglycans interact with TIMP-3. PMID: 27545813
  16. The expression level of LIPC, SLC16A8, and TIMP-3 was significantly associated with age-related macular degeneration pathology. PMID: 27966779
  17. Levels of miR-221/222 exhibit a negative association with estrogen receptor in in situ tumors and a positive association with TIMP3 messenger RNA expression levels in pure invasive breast cancers. PMID: 27488105
  18. Electrostatic potential calculations suggest a competition between negatively charged GAGs and highly negatively charged complement-like domains of LRP-1 for binding to a positively charged area of TIMP-3 as an underlying mechanism. PMID: 27610455
  19. TIMP3 overexpression after myocardial infarction improves myocardial structural remodeling and function by promoting angiogenesis and inhibiting early proteolysis. PMID: 28550172
  20. A study evaluated single nucleotide variants (SNVs) of candidate genes in the aggrecan metabolic pathway. The results indicate an association between these SNVs and lumbar disc degeneration and Modic changes. PMID: 28081267
  21. Research suggests that miR-206 may function as an inflammatory regulator and drive the expression of MMP9 in M.tb-infected THP-1 cells by targeting TIMP3, indicating that miR-206 is a potential therapeutic target for patients with TB. PMID: 27291149
  22. Plasma TIMP3 serves as a biomarker for predicting the tumor stage in patients with oral squamous cell carcinoma. PMID: 28138307
  23. TIMP-3 K26A/K45A retained a higher affinity for sulfated glycosaminoglycans than K42A/K110A and exhibited increased affinity for ADAMTS-5 in the presence of heparin. PMID: 27582494
  24. Out of 225 genetic tests conducted, 150 were for recessive IRD, and 75 were for dominant IRD. A positive molecular diagnosis was made in 70 (59%) probands with recessive IRD and 19 (26%) probands with dominant IRD. Thirty-two novel variants were identified; among these, 17 sequence changes in four genes were predicted to be possibly or probably damaging, including: ABCA4 (14), BEST1 (2), PRPH2 (1), and TIMP3. PMID: 28005406
  25. A study evaluated MMP-12 and TIMP-1, TIMP-2, TIMP-3, and TIMP-4 levels in 40 patients with asymptomatic and symptomatic critical carotid artery stenosis (CAS) with neurological symptoms onset within the preceding 12 hours. Results suggest that MMP-12 is related to critical CAS independently of symptoms. Furthermore, TIMP-3 and TIMP-4 appear to be specifically related to stroke. PMID: 27746079
  26. A total of 1096 subjects from eight studies were included in a meta-analysis. Overall, a significant association between TIMP-3 methylation and gastric cancer risk was observed. Our results demonstrate a positive correlation between TIMP-3 promoter methylation and gastric cancer risk, suggesting that TIMP-3 promoter methylation may serve as a molecular marker for gastric cancer. PMID: 27314831
  27. TIMP-3 expression is suppressed by promoter methylation in HCC (Hepatocellular Carcinoma). PMID: 27222429
  28. Both TIMP3 and APC methylation were associated with lymph node metastasis and higher clinical stages of tumors. Patients with methylation at TIMP3 or APC had worse prognoses compared to those without these alterations. PMID: 27706614
  29. Data indicate that the TGF-beta pathway regulates the epithelial-to-mesenchymal transition (EMT) of gastric cancer cells by increasing the levels of microRNA miRNA-181b to target Timp3 via the Smad2/3/4-dependent pathway. PMID: 27383203
  30. Research has identified two urinary biomarkers—bFGF and TIMP3—that effectively detect one of the most common pediatric brain tumors, juvenile pilocytic astrocytomas, with high accuracy. PMID: 27314542
  31. The levels of TIMP-3, and in some cases also TIMP-2, are decreased in Emery-Dreifuss muscular dystrophy (EDMD). The decrease might be associated with an adverse effect on matrix metalloproteinases and remodeling of the myocardial matrix. The specific decrease of TIMP-3 indicates that this biomarker might aid in the early detection of cardiac involvement in EDMD. PMID: 25563468
  32. TIMP3 knockdown exhibited opposite effects on the regulation of these genes. PMID: 26749283
  33. This case series suggests that the C113G TIMP3 variant may represent a novel, highly penetrant mutation causing choroidal neovascularisation of relatively late onset for Sorsby's fundus dystrophy, mimicking early onset AMD. PMID: 26493035
  34. Expression of TIMP3 is low in pituitary adenomas, including ACTH-secreting pituitary adenomas, and negatively associated with tumor aggressiveness. PMID: 26676407
  35. Genotypes of rs135025 and rs80272 in TIMP3 contribute to the development of preeclampsia in Han Chinese women. PMID: 26304100
  36. TIMP3 has been validated as a direct target of miRNA-21 using a dual-luciferase reporter assay. Silencing with small interfering RNA against TIMP3 promoted angiogenesis and increased MMP2 and MMP9 expression at the protein level. PMID: 26872030
  37. TIMP3 is a dominant negative regulator of angiogenesis in cutaneous melanoma, and gene silencing by promoter methylation is associated with a poor outcome. PMID: 26707830
  38. Taken together, these findings suggest that the imbalance between aggrecanase and TIMP-3 might play a significant role in the pathogenesis of IDD (Intervertebral Disc Degeneration) and thus represent a potential therapeutic target for treating IDD. PMID: 26686417
  39. Gene-gene interactions between Smad3 rs6494629T/C and TIMP3 rs715572G/A polymorphisms may play more significant protective roles in knee OA (Osteoarthritis). PMID: 26068512
  40. Results indicate that gene-environment interactions between the TIMP3 rs9862 polymorphisms and betel quid may alter oral cancer susceptibility and tumor growth in Taiwanese men. PMID: 26579821
  41. Following acute ACL injury, an upregulation of TIMP-3, the primary aggrecanase inhibitor, is elicited in response to increased aggrecan degradation, which may inhibit further cleavage. PMID: 26123869
  42. TIMP3 promotes endothelial apoptosis via a caspase-independent mechanism. PMID: 25558000
  43. This data demonstrates that increased expression of miR-21 enhanced the invasive potential of melanoma cell lines through TIMP3 inhibition. PMID: 25587717
  44. The miR-191-TIMP3 axis might be crucial in the malignant transformation of endometriosis to endometriosis-associated ovarian cancer. PMID: 25819812
  45. TIMP-3 expression was associated with malignant behaviors of hepatocellular carcinoma, including portal vein invasion and lymph node metastasis. TIMP-3 expression was an independent prognostic factor for disease-free survival and overall survival. PMID: 25171061
  46. TIMP3 methylation had prognostic value in patients with glioblastoma multiforme. PMID: 25467143
  47. This study expands the spectrum of mutations in the TIMP3 gene and associated phenotypic findings. Imaging using late-phase ICG-A may be beneficial for the early identification of individuals at risk for developing SFD (Sorsby's Fundus Dystrophy). PMID: 25766588
  48. The hypermethylation frequencies of TIMP-3 and GSTP-1 in reversible chronic inflammatory gum disease and the control group were similar but significantly lower than those for malignant disease patients. PMID: 25041782
  49. HPV-positive oropharyngeal squamous cell carcinoma is associated with TIMP3 and CADM1 promoter hypermethylation. PMID: 25065733
  50. A report found no association of TIMP3 genetic polymorphisms with thoracic aortic dissection in the Chinese Han population. PMID: 24487965

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Database Links

HGNC: 11822

OMIM: 136900

KEGG: hsa:7078

STRING: 9606.ENSP00000266085

UniGene: Hs.644633

Involvement In Disease
Sorsby fundus dystrophy (SFD)
Protein Families
Protease inhibitor I35 (TIMP) family
Subcellular Location
Secreted, extracellular space, extracellular matrix.

Q&A

What is TIMP3 and why is it relevant for research?

TIMP3 (Tissue Inhibitor of Metalloproteinases 3) is a crucial protein that complexes with metalloproteinases and irreversibly inactivates them by binding to their catalytic zinc cofactor. It plays significant roles in tissue-specific acute responses to remodeling stimuli . TIMP3 is known to act on multiple matrix metalloproteinases including MMP-1, MMP-2, MMP-3, MMP-7, MMP-9, MMP-13, MMP-14, and MMP-15 . Research on TIMP3 is particularly relevant for understanding extracellular matrix regulation, cell signaling pathways, and neurodegenerative conditions. The protein is predominantly localized in the extracellular space and is enriched in placenta and adipose tissues . Its study provides insights into mechanisms of tissue remodeling, wound healing, and pathological conditions involving matrix degradation.

How should I select between polyclonal and monoclonal TIMP3 antibodies for my experiments?

Selection between polyclonal and monoclonal TIMP3 antibodies should be based on your specific experimental needs. The polyclonal TIMP3 antibodies, such as those FITC-conjugated variants documented in the search results, offer broad epitope recognition that can be advantageous for proteins with low expression levels . They typically recognize multiple epitopes on the TIMP3 protein, potentially providing stronger signals in applications like ELISA.

Monoclonal antibodies like the TIMP3 (D74B10) Rabbit mAb provide superior specificity to a single epitope, which is particularly valuable for distinguishing between closely related proteins or specific protein states . They also offer excellent lot-to-lot consistency. For quantitative studies requiring precise measurements, monoclonal antibodies may be preferable due to their consistent binding characteristics. Consider using polyclonal antibodies for initial detection and validation experiments, and monoclonal antibodies for studies requiring high specificity or standardized protocols.

What are the optimal storage conditions for maintaining TIMP3 antibody activity?

To maintain optimal activity of TIMP3 antibody, FITC conjugated, specific storage conditions must be followed. The antibody should be shipped at 4°C and upon receipt, aliquoted for long-term storage . For long-term preservation, store at -20°C or -80°C, with -80°C being preferable for extended periods beyond one year . The antibody is typically stable for one year after shipment when properly stored .

Repeated freeze-thaw cycles significantly reduce antibody activity, so creating single-use aliquots is essential . The storage buffer containing 0.03% Proclin 300, 50% Glycerol, 0.01M PBS, pH 7.4 helps maintain antibody stability . For antibodies in the 20μl size, note that they contain 0.1% BSA which provides additional stability . When handling, always keep antibodies on ice and minimize exposure to room temperature. Document the date of receipt, aliquoting, and freeze-thaw cycles to monitor potential degradation.

How should I optimize TIMP3 antibody dilutions for different experimental applications?

Optimization of TIMP3 antibody dilutions is critical for achieving reliable and reproducible results across different applications. Based on the research data, the following application-specific dilution ranges are recommended:

ApplicationRecommended Dilution RangeKey Considerations
Western Blot (WB)1:1000-1:4000Start with 1:1000 for unknown samples
Immunohistochemistry (IHC)1:200-1:800Use TE buffer pH 9.0 for antigen retrieval
ELISATypically 1:1000Validated across multiple sources

When optimizing dilutions, create a titration series spanning the recommended range and include appropriate positive and negative controls. For human samples, placenta tissue serves as an excellent positive control as TIMP3 is enriched in this tissue . For murine studies, brain tissue samples have demonstrated positive WB detection .

The observed molecular weight for TIMP3 is 20-30 kDa, with specific bands detected at approximately 20 and 25 kDa . Sample-dependent variations may occur, so optimization is necessary for each experimental system to obtain optimal results .

What are the critical quality control parameters for validating TIMP3 antibody, FITC conjugated before experimental use?

Thorough validation of TIMP3 antibody, FITC conjugated is essential before conducting definitive experiments. Key validation parameters include:

  • Specificity verification: Test the antibody using positive control tissues known to express TIMP3 (human placenta, mouse/rat brain tissues) . Include appropriate negative controls and blocking peptides to confirm specific binding.

  • Fluorescence assessment: Since this is a FITC-conjugated antibody, evaluate the fluorescence signal-to-noise ratio using flow cytometry or fluorescence microscopy. Optimal excitation is at ~495nm and emission at ~520nm.

  • Cross-reactivity evaluation: If working across species, confirm the antibody's reactivity with human, mouse, and rat samples as indicated in the specifications . The antibody raised against recombinant human Metalloproteinase inhibitor 3 protein (30-208AA) may have variable cross-reactivity .

  • Application-specific validation: For each intended application (ELISA, WB, IHC), perform pilot experiments with progressive dilutions to determine optimal working conditions . For ELISA, construct a standard curve to assess linearity and sensitivity.

  • Functional validation: Consider using known TIMP3 inhibitors or TIMP3 knockout/knockdown samples as additional controls to verify antibody specificity in your experimental system.

Documentation of these validation steps is critical for ensuring reproducible results and should be included in your experimental methods sections.

How can I effectively use TIMP3 antibody, FITC conjugated for fluorescence microscopy studies?

For optimal fluorescence microscopy with TIMP3 antibody, FITC conjugated, implement the following protocol:

  • Sample preparation: Fix cells/tissues using 4% paraformaldehyde for 15-20 minutes at room temperature. For tissues requiring antigen retrieval, use TE buffer pH 9.0 as recommended for TIMP3 detection .

  • Permeabilization and blocking: Permeabilize with 0.1-0.3% Triton X-100 for 10 minutes, followed by blocking with 5% normal serum (matching the secondary antibody host) and 1% BSA for 1 hour at room temperature.

  • Antibody incubation: Apply TIMP3 antibody, FITC conjugated at optimized dilutions (starting with 1:200 for fluorescence microscopy) and incubate overnight at 4°C in a humidified chamber. Since the antibody is directly conjugated with FITC, no secondary antibody is required.

  • Counterstaining: Use DAPI (1μg/ml) for nuclear staining. If performing co-localization studies, select complementary fluorophores that don't overlap with FITC's emission spectrum.

  • Imaging parameters: Image using appropriate filter sets for FITC (excitation ~495nm, emission ~520nm). When conducting quantitative analysis, use identical acquisition parameters for all samples and include appropriate controls for autofluorescence.

  • Signal amplification: If signal intensity is low, consider tyramide signal amplification (TSA) systems compatible with FITC, being careful to avoid overamplification which could lead to non-specific signal.

Remember that TIMP3 is primarily localized to the extracellular matrix , so expect an extracellular staining pattern rather than intracellular localization.

How can TIMP3 antibody be utilized in studying metalloproteinase regulation in tissue remodeling?

TIMP3 antibody, FITC conjugated provides a powerful tool for investigating metalloproteinase regulation in tissue remodeling through several advanced approaches:

  • Co-localization studies: Combine TIMP3-FITC antibody with antibodies against specific MMPs (MMP-1, MMP-2, MMP-3, MMP-7, MMP-9, MMP-13, MMP-14, and MMP-15) to visualize and quantify interaction domains in tissues undergoing remodeling . This allows direct observation of the spatial relationship between TIMP3 and its target MMPs.

  • Temporal regulation analysis: In wound healing or development models, use TIMP3-FITC antibody to track changes in TIMP3 expression over time alongside MMP activity assays. This combination reveals the dynamic balance between proteolytic activity and inhibition during tissue remodeling.

  • ECM component correlation: Combine TIMP3 immunofluorescence with staining for ECM components (collagens, elastin, fibronectin) to evaluate how TIMP3 distribution correlates with matrix integrity in normal versus pathological remodeling scenarios.

  • Intervention studies: In models where TIMP3 function is modulated (through overexpression, silencing, or pharmaceutical intervention), use TIMP3-FITC antibody to confirm target engagement and track resulting changes in tissue architecture through confocal or super-resolution microscopy.

  • Flow cytometry applications: For studies involving cell suspensions from remodeling tissues, TIMP3-FITC antibody can be used in flow cytometry to quantify cell-associated TIMP3 and correlate with cell surface MMP expression.

When designing these experiments, it's crucial to include appropriate controls for tissue-specific autofluorescence and to optimize fixation protocols that preserve both TIMP3 and MMP epitopes while maintaining tissue architecture.

What are the technical considerations for using TIMP3 antibody in quantitative proteomic approaches?

When incorporating TIMP3 antibody, FITC conjugated into quantitative proteomic workflows, several technical considerations are critical:

  • Sample preparation optimization: TIMP3's association with the ECM requires effective extraction protocols. Use a combination of mechanical disruption and specialized buffers containing detergents appropriate for membrane-associated proteins. Consider using sequential extraction methods to separate ECM-bound and soluble TIMP3 fractions.

  • Immunoprecipitation standardization: For targeted proteomics:

    • Use a known quantity of recombinant TIMP3 protein to create a standard curve

    • Validate pull-down efficiency using Western blotting before mass spectrometry

    • Include IgG controls and isotype-matched non-specific antibodies

    • Consider pre-clearing samples to reduce non-specific binding

  • FITC considerations in MS workflows: The FITC conjugation can affect mass spectrometry analysis by modifying lysine residues. If conducting MS after immunoprecipitation, consider:

    • Using unconjugated TIMP3 antibodies for the initial pull-down

    • Implementing specialized fragmentation techniques that account for the FITC modification

    • Including FITC-modified standard peptides in your analysis pipeline

  • Cross-linking strategies: For capturing transient TIMP3-MMP interactions, implement formaldehyde or specialized cross-linking protocols prior to immunoprecipitation to stabilize protein complexes.

  • Absolute quantification approach: For absolute quantification of TIMP3, develop a multiple reaction monitoring (MRM) method using synthetic stable isotope-labeled peptides unique to TIMP3. Select peptides that avoid regions with post-translational modifications for most reliable quantification.

The observed molecular weight range of 20-30 kDa with specific bands at 20 and 25 kDa suggests potential post-translational modifications or isoforms that should be accounted for in your quantitative proteomic analysis.

How should I interpret conflicting TIMP3 expression data between antibody-based and transcriptomic methods?

Discrepancies between TIMP3 protein expression (detected via antibodies) and mRNA levels (from transcriptomic methods) are common and require systematic interpretation:

  • Post-transcriptional regulation assessment: TIMP3 is subject to extensive post-transcriptional regulation, including microRNA targeting. When discrepancies occur, evaluate the presence of regulatory microRNAs (e.g., miR-21, miR-221) known to modulate TIMP3 translation using RT-qPCR or small RNA sequencing.

  • Protein stability analysis: TIMP3's extracellular localization and interaction with the ECM affects its stability and turnover rate . Compare protein half-life data with mRNA decay rates using pulse-chase experiments or translation inhibitors like cycloheximide to determine if differential stability explains the discrepancy.

  • Technical validation workflow:

    • Validate antibody specificity using TIMP3 knockout/knockdown controls

    • Test multiple antibodies targeting different TIMP3 epitopes (polyclonal vs. monoclonal)

    • Use absolute quantification methods for both mRNA (digital droplet PCR) and protein (MS-based)

    • Verify sample integrity and extraction efficiency for both protein and RNA

  • Experimental timing considerations: TIMP3 protein may accumulate in the ECM over time while mRNA expression is more dynamic. Implement time-course experiments to capture the temporal relationship between transcription and steady-state protein levels.

  • Tissue heterogeneity factors: In complex tissues, discrepancies may reflect cellular heterogeneity. Consider single-cell RNA-seq paired with immunohistochemistry to resolve cell type-specific expression patterns that might be masked in bulk analyses.

When reporting conflicting data, present both protein and mRNA results with appropriate biological replicates and statistical analyses, avoiding overinterpretation of either dataset alone.

How can I address non-specific binding issues when using TIMP3 antibody, FITC conjugated?

When encountering non-specific binding with TIMP3 antibody, FITC conjugated, implement this systematic troubleshooting approach:

  • Optimize blocking conditions: Test different blocking agents beyond standard BSA or normal serum:

    • 5% non-fat dry milk in PBS-T

    • Commercial blocking solutions specifically designed for fluorescence applications

    • Combination blocking with both 2% BSA and 5% normal serum from the same species as the antibody host

  • Adjust antibody concentration: If using concentrations in the higher range of recommendations (such as 1:200 for IHC), create a dilution series starting from 1:400 to 1:800 to identify the optimal signal-to-noise ratio .

  • Implement additional washing steps:

    • Increase both the number and duration of washes (5-6 washes of 5-10 minutes each)

    • Include 0.05-0.1% Tween-20 in wash buffers to reduce hydrophobic non-specific interactions

    • Consider high-salt wash buffers (250-500mM NaCl) for one of the washing steps

  • Sample-specific optimizations:

    • For tissues with high autofluorescence, pre-treat with sodium borohydride (0.1% for 10 minutes) or commercial autofluorescence quenching reagents

    • Implement Sudan Black B treatment (0.1-0.3% in 70% ethanol) specifically for tissues with high lipofuscin content

  • Antibody pre-adsorption: If non-specific binding persists despite the above measures, consider pre-adsorbing the antibody with tissue powder prepared from a relevant negative control tissue.

  • Control experiments: Always run parallel staining with isotype control antibodies (rabbit IgG-FITC) at the same concentration to distinguish between specific and non-specific signals . Include a no-primary antibody control to assess secondary reagent and autofluorescence contributions.

Document all optimization steps systematically, as the optimal protocol may vary depending on tissue type, fixation method, and the specific research question being addressed.

What considerations are important when quantifying TIMP3 expression using FITC-conjugated antibodies in flow cytometry?

Quantifying TIMP3 expression using FITC-conjugated antibodies in flow cytometry requires attention to several critical factors:

  • Sample preparation optimization:

    • For cell surface TIMP3: Use gentle enzymatic dissociation methods that preserve extracellular epitopes

    • For intracellular/total TIMP3: Implement appropriate fixation (2-4% paraformaldehyde) and permeabilization (0.1% saponin or commercial permeabilization buffers)

  • Signal calibration and standardization:

    • Use quantitative fluorescence calibration beads (MESF beads) compatible with FITC to convert fluorescence intensity to standardized units

    • Include a quantitative standard curve using cells with known TIMP3 expression levels

    • Apply consistent PMT voltage settings across experiments

  • FITC-specific considerations:

    • Account for FITC's susceptibility to photobleaching by minimizing light exposure during sample preparation

    • Be aware of FITC's pH sensitivity; maintain samples at physiological pH (7.2-7.4)

    • Implement color compensation accurately as FITC has spillover into other channels (particularly PE)

  • Controls for accurate quantification:

    • Fluorescence Minus One (FMO) controls are essential for setting gates

    • Include biological reference samples in each experiment for inter-experimental normalization

    • For absolute quantification, use QuantiBRITE beads or similar reference standards

  • Data analysis recommendations:

    • Report median fluorescence intensity rather than mean (less sensitive to outliers)

    • For heterogeneous populations, consider visualization tools like viSNE or UMAP to identify subpopulations with differential TIMP3 expression

    • Use density plots rather than histogram overlays for clearer visualization of population shifts

Remember that TIMP3 is primarily associated with the extracellular matrix , so detection of cell-associated TIMP3 may represent protein bound to cell surface proteoglycans or in the process of secretion, rather than truly intracellular protein.

How do I interpret variable TIMP3 banding patterns in Western blot analysis?

TIMP3 often exhibits variable banding patterns in Western blot analysis that require careful interpretation based on biological and technical factors:

  • Expected molecular weight profile:

    • The calculated molecular weight for TIMP3 is 24 kDa

    • Observed bands typically appear between 20-30 kDa

    • Specific bands are commonly detected at approximately 20 and 25 kDa

  • Post-translational modifications interpretation:

    • The 25 kDa band often represents glycosylated TIMP3

    • Additional higher molecular weight bands (30-35 kDa) may indicate other modifications or protein complexes

    • Treatment with glycosidases prior to Western blotting can help identify glycosylation-dependent bands

  • Sample preparation factors:

    • ECM-associated TIMP3 requires stringent extraction methods; insufficient extraction may result in underrepresentation

    • Heating samples at different temperatures (60°C vs. 95°C) can reveal aggregation-prone forms

    • Reducing vs. non-reducing conditions can affect banding patterns due to disulfide bonding

  • Tissue-specific expression patterns:

    • Human placenta tissue typically shows stronger TIMP3 bands compared to other tissues

    • Brain tissue from mouse and rat models also shows detectable TIMP3 expression

    • Expression patterns may vary between tissue types due to tissue-specific glycosylation or processing

  • Antibody-specific considerations:

    • Different antibodies targeting distinct epitopes may recognize different forms of TIMP3

    • Polyclonal antibodies typically detect multiple forms more readily than monoclonal antibodies

    • The TIMP3 (D74B10) Rabbit mAb is specifically documented to detect bands at 20 and 25 kDa

When reporting Western blot results, clearly document the observed molecular weights, include molecular weight markers, and specify the antibody and extraction methods used. Consider parallel validation with mass spectrometry to confirm the identity of unusual or unexpected bands.

How can TIMP3 antibodies contribute to understanding extracellular vesicle-mediated signaling?

TIMP3 antibodies, particularly FITC-conjugated variants, offer unique opportunities for investigating extracellular vesicle (EV) biology and signaling:

  • EV cargo profiling: Use TIMP3 antibodies in Western blot or immunogold electron microscopy to identify and quantify TIMP3 as a cargo protein in different EV subpopulations. This is particularly relevant as TIMP3's extracellular localization makes it a candidate for EV-mediated transport between cells and tissues .

  • Flow cytometry applications for EV characterization:

    • The FITC conjugation enables direct detection of TIMP3-positive EVs using high-sensitivity flow cytometers

    • Develop multiparameter panels combining TIMP3-FITC with markers for EV subpopulations (CD63, CD9, Annexin V)

    • Implement fluorescence threshold triggering to detect small TIMP3-positive EVs below conventional size limits

  • Functional studies of EV-associated TIMP3:

    • Compare the activity of EV-associated TIMP3 versus soluble TIMP3 in MMP inhibition assays

    • Investigate whether EV packaging protects TIMP3 from degradation or modifies its inhibitory profile

    • Examine how EV-delivered TIMP3 affects recipient cell behavior, particularly in contexts of tissue remodeling

  • Imaging EV-mediated TIMP3 transfer:

    • Use TIMP3-FITC antibodies in live-cell imaging to track EV-mediated delivery of TIMP3 to recipient cells

    • Implement super-resolution microscopy to visualize the precise localization of TIMP3 in EVs and after delivery

    • Combine with pH-sensitive dyes to determine if TIMP3 remains within endosomes or is released into the cytosol

  • Clinical and diagnostic applications:

    • Develop EV-based liquid biopsy approaches using TIMP3 as a biomarker for diseases involving altered matrix remodeling

    • Create standardized assays for detecting EV-associated TIMP3 in biological fluids

This emerging research area benefits from the direct fluorescent conjugation, enabling sensitive detection without secondary antibody steps that might disrupt delicate EV structures.

What are the considerations for multiplex immunofluorescence including TIMP3 antibody, FITC conjugated?

Implementing multiplex immunofluorescence with TIMP3 antibody, FITC conjugated requires careful planning and technical considerations:

  • Panel design strategy:

    • FITC emits in the green spectrum (~520nm), so select complementary fluorophores for other targets that minimize spectral overlap (e.g., Cy3, Cy5, APC)

    • When studying TIMP3's relationship with MMPs, consider the biological relevance of your panel (e.g., including MMP-2, MMP-9 with relevant ECM components)

    • Include markers that help identify cell types of interest in your tissue context

  • Technical optimization for FITC-specific issues:

    • Account for FITC's relative susceptibility to photobleaching by either imaging FITC channels first or using anti-fade mounting media

    • Be aware that FITC's quantum yield is pH-sensitive; ensure consistent pH in your samples

    • If tissue autofluorescence is problematic in the FITC channel, consider spectral unmixing or linear unmixing algorithms during image analysis

  • Sequential staining protocols:

    • For complex multiplex panels, implement cyclic immunofluorescence or iterative staining

    • When using tyramide signal amplification (TSA) for signal boosting, apply to non-FITC channels first as the covalent binding allows for antibody stripping without signal loss

    • Document the order of staining and potential epitope masking effects

  • Validation requirements:

    • Run single-color controls for each antibody to verify specificity and optimize exposure settings

    • Include absorption controls where relevant antibodies are pre-incubated with their target proteins

    • Test for potential antibody cross-reactivity, particularly if using multiple rabbit-derived antibodies

  • Quantification approaches:

    • Implement cell segmentation algorithms that accurately identify cellular and extracellular compartments

    • Use colocalization analysis with appropriate statistical measures (Pearson's correlation, Manders' overlap coefficient)

    • Consider advanced spatial analysis techniques for analyzing TIMP3 distribution relative to other proteins

By carefully addressing these considerations, researchers can generate high-quality multiplex data that reveals the complex spatial relationships between TIMP3, MMPs, and ECM components in both physiological and pathological contexts.

How can I integrate TIMP3 antibody-based detection with proteolytic activity assays?

Integrating TIMP3 antibody detection with functional proteolytic activity assays provides powerful insights into the relationship between inhibitor presence and MMP activity. Here's a comprehensive approach:

This integrated approach overcomes the limitations of static antibody-based detection alone, providing insights into the functional consequences of TIMP3 expression patterns across tissues or experimental conditions.

What emerging technologies might enhance the application of TIMP3 antibodies in research?

Several cutting-edge technologies are poised to revolutionize how TIMP3 antibodies can be applied in research:

  • Advanced imaging technologies:

    • Super-resolution microscopy techniques (STORM, PALM, STED) can reveal nanoscale distribution of TIMP3 within the ECM, overcoming the diffraction limit of conventional microscopy

    • Expansion microscopy, which physically enlarges specimens, could provide unprecedented views of TIMP3 organization relative to ECM components

    • Light sheet fluorescence microscopy enables rapid 3D imaging of TIMP3 distribution throughout intact tissues with minimal photobleaching

  • Single-cell proteomics integration:

    • Mass cytometry (CyTOF) using metal-conjugated TIMP3 antibodies would allow simultaneous detection of dozens of proteins alongside TIMP3

    • Microfluidic-based single-cell Western blotting could detect TIMP3 expression heterogeneity across individual cells

    • Spatial proteomics platforms combining in situ antibody detection with mass spectrometry would provide both localization and comprehensive protein interaction data

  • Proximity labeling approaches:

    • APEX2 or BioID proximity labeling systems coupled with TIMP3 could reveal transient interacting partners beyond known MMPs

    • Split-fluorescent protein complementation assays would enable visualization of specific TIMP3-MMP interactions in living cells

    • Protein interaction reporter technology could capture and identify crosslinked TIMP3-partner complexes under native conditions

  • Antibody engineering advancements:

    • Bi-specific antibodies targeting both TIMP3 and specific MMPs could provide insights into inhibitor-enzyme proximity

    • Nanobodies against TIMP3 would offer improved tissue penetration and reduced background compared to conventional antibodies

    • Photoswitchable fluorescent antibody conjugates would enable selective visualization of protein subpopulations

  • Advanced computational analysis:

    • Machine learning algorithms for automated detection of subtle changes in TIMP3 distribution patterns

    • Integrative multi-omics approaches combining antibody-based detection with transcriptomics and metabolomics

These emerging technologies promise to overcome current limitations in sensitivity, resolution, and throughput, potentially revealing previously unrecognized aspects of TIMP3 biology in development, homeostasis, and disease.

What are the most significant gaps in current TIMP3 research methodologies?

Despite advances in TIMP3 research, several methodological gaps remain that limit comprehensive understanding:

  • Quantitative standards limitations:

    • Lack of standardized reference materials for absolute quantification of TIMP3 across laboratories

    • Insufficient validation of antibody-based quantification against orthogonal methods

    • Need for improved methods to distinguish between active and inactive forms of TIMP3 protein

  • Temporal dynamics challenges:

    • Current methodologies primarily provide static snapshots rather than continuous measurement of TIMP3 dynamics

    • Limited approaches for tracking TIMP3 turnover rates in different tissue compartments

    • Difficulty correlating rapid transcriptional changes with the more stable protein pool in the ECM

  • Tissue context preservation:

    • Extraction methods often disrupt the native ECM architecture, potentially altering TIMP3 interactions

    • Challenges in preserving both protein structure and tissue architecture simultaneously

    • Limited ability to distinguish between different binding states of TIMP3 in situ

  • PTM characterization deficiencies:

    • Incomplete characterization of site-specific post-translational modifications of TIMP3

    • Lack of modification-specific antibodies for detecting phosphorylation, glycosylation, or other PTMs

    • Insufficient methods for determining how PTMs affect TIMP3 function and localization

  • Cross-species consistency issues:

    • Variable antibody performance across model organisms limiting translational research

    • Differences in TIMP3 extraction efficiency between human and animal tissues

    • Incomplete validation of antibody specificity across evolutionary diverse systems

Addressing these methodological gaps requires interdisciplinary approaches combining protein biochemistry, advanced imaging, computational biology, and systems-level analysis. Development of new technologies specifically designed to overcome these limitations would significantly advance TIMP3 research and potentially reveal novel functions beyond the well-established role in MMP inhibition.

How might TIMP3 antibody applications evolve for precision medicine approaches?

The application of TIMP3 antibodies in precision medicine represents an exciting frontier with several developing trajectories:

  • Companion diagnostics development:

    • TIMP3 antibody-based tissue diagnostics could stratify patients for therapies targeting matrix remodeling pathways

    • Quantitative immunoassays for TIMP3 in liquid biopsies (blood, urine) may serve as minimally invasive biomarkers for conditions involving ECM dysregulation

    • Multiplex panels incorporating TIMP3 alongside related biomarkers could improve diagnostic accuracy for complex conditions like fibrosis or tumor invasion

  • Therapeutic response monitoring:

    • Sequential measurement of TIMP3 levels using standardized antibody-based assays could track treatment efficacy for interventions targeting ECM remodeling

    • Spatial analysis of TIMP3 distribution in tissue biopsies before and after treatment could reveal mechanistic insights into therapeutic success or failure

    • Correlation of TIMP3 levels with clinical outcomes would help establish its value as a prognostic indicator

  • Targeted delivery strategies:

    • TIMP3 antibodies could be utilized to identify tissues with abnormal TIMP3 expression as targets for therapeutic intervention

    • Antibody-drug conjugates targeting TIMP3-rich microenvironments might enable localized delivery of anti-fibrotic or anti-inflammatory agents

    • Nanoparticle delivery systems decorated with TIMP3-binding fragments could concentrate therapeutics in regions of active matrix remodeling

  • Image-guided interventions:

    • Fluorescently labeled TIMP3 antibodies could guide surgical resection by identifying tissues with abnormal ECM composition

    • Intraoperative visualization of TIMP3 distribution might improve surgical decision-making in oncology or reconstructive surgery

    • Near-infrared conjugated antibodies would enable deeper tissue imaging for minimally invasive procedures

  • Personalized therapeutic approaches:

    • Patient-derived organoids assessed with TIMP3 antibodies could predict individual responses to therapies affecting ECM remodeling

    • Correlation of genetic variants in TIMP3 regulatory regions with protein expression patterns might explain differential disease progression

    • Integration of TIMP3 expression data with other molecular profiling to develop comprehensive patient stratification algorithms

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