TMCO1 Antibody, FITC conjugated

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Description

Applications in Research

This antibody is utilized in studies of calcium signaling and endoplasmic reticulum (ER) function. Notable applications include:

  • ELISA: Quantitative detection of TMCO1 in lysates or purified proteins .

  • Dot Blot: Rapid screening of TMCO1 expression in tissue samples .

  • Immunofluorescence: Localization of TMCO1 in ER membranes within live or fixed cells .

  • Immunohistochemistry: Staining of paraffin-embedded tissues (e.g., testis, kidney) .

Example Protocol (IF):

  1. Fix cells with 4% PFA, permeabilize with 0.1% Triton X-100.

  2. Block with 10% BSA for 1 hour.

  3. Incubate with TMCO1 antibody (1:100 dilution) overnight at 4°C.

  4. Detect with anti-rabbit secondary antibody conjugated to Alexa Fluor 488 .

Role of TMCO1 in Calcium Homeostasis

TMCO1 forms a homotetrameric channel that regulates ER calcium levels by releasing excess calcium into the cytosol . Key findings include:

  • ER Overloading Response: TMCO1 activation prevents ER calcium overload-induced apoptosis .

  • Subcellular Localization: Expressed in ER membranes and Golgi apparatus .

Disease Implications

  • Prostate Cancer: TMCO1 overexpression correlates with metastatic potential .

  • Neurodegeneration: Dysregulation linked to ER stress in Alzheimer’s disease models .

Comparison of FITC-Conjugated TMCO1 Antibodies

SupplierCatalog NumberApplicationsImmunogenPrice (USD)
American Research ProductsCSB-PA891784LC01HU ELISA, Dot Blotaa 43–79$169.00
Antibodies-OnlineABIN7146304 ELISA, IF, IHCaa 43–79N/A
Proteintech27757-1-AP WB, IHC, IFFull-lengthN/A

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Generally, we can ship the products within 1-3 business days after receiving your order. The delivery time may vary depending on the purchase method or location. Please consult your local distributors for specific delivery time information.
Synonyms
TMCO1; TMCC4; PNAS-10; PNAS-136; UNQ151/PRO177; Calcium load-activated calcium channel; CLAC channel; Transmembrane and coiled-coil domain-containing protein 1; Transmembrane and coiled-coil domains protein 4; Xenogeneic cross-immune protein PCIA3
Target Names
TMCO1
Uniprot No.

Target Background

Function
TMCO1 is a calcium-selective channel crucial for preventing calcium store overload, thereby playing a vital role in calcium homeostasis. In response to endoplasmic reticulum (ER) overloading, TMCO1 assembles into a homotetramer, forming a functional calcium-selective channel that regulates the calcium content within the ER store. TMCO1 is also a component of a ribosome-associated ER translocon complex involved in multi-pass membrane protein transport into the ER membrane and biogenesis. Together with SEC61 and TMEM147, TMCO1 forms the lipid-filled cavity at the center of the translocon. Within this cavity, TMEM147 may insert hydrophobic segments of multi-pass membrane proteins from the lumen, while TMCO1 may insert hydrophobic segments of nascent chains from the cytosol, both processes being regulated by SEC61.
Gene References Into Functions
  1. TMCO1 recruits the PH domain and leucine-rich repeat protein phosphatase 2 (PHLPP2) to dephosphorylate pAKT1(serine 473) (S473). Mutagenesis at S60 of the TMCO1 protein alleviates TMCO1-induced cell-cycle arrest and restores the AKT pathway in BFTC905 cells. Stable TMCO1 (wild-type) overexpression suppresses tumor size in xenograft mice, while T33A and S60A mutants recover tumor size. PMID: 28972042
  2. The TMCO1 genotype has been shown to increase the risk of glaucoma development among non-Hispanic whites, the largest racial subgroup in the OHTS cohort. PMID: 27707548
  3. Three common variants in TMCO1, ATOH7, and CAV1 were found to be significantly associated with primary open-angle, primary angle closure, and pseudoexfoliation glaucoma in Pakistani cohorts. PMID: 25489222
  4. TMCO1 deficiency is linked to autosomal recessive cerebrofaciothoracic dysplasia. PMID: 24194475
  5. Two nominally significant SNPs (P < 0.05), including rs7518099 and rs2814471 in TMCO1, were identified in primary open-angle glaucoma. PMID: 23963167
  6. This study demonstrates a relationship between genetic variation in and around TMCO1 with age at diagnosis of POAG, offering insights into the potential cellular function/s of this gene. PMID: 22714896
  7. Intraocular pressure (IOP) was significantly associated with rs11656696, located in GAS7 at 17p13.1, and with rs7555523, located in TMCO1 at 1q24.1. These findings suggest that we have identified two clinically relevant genes involved in IOP regulation. PMID: 22570627
  8. A genome-wide association study for open-angle glaucoma (OAG) blindness at the tnco1 and cdkn2b loci was conducted. PMID: 21532571
  9. This report highlights the association of a TMCO1 sequence variant with a genetic disorder in humans. PMID: 20018682

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Database Links

HGNC: 18188

OMIM: 137760

KEGG: hsa:54499

STRING: 9606.ENSP00000375975

UniGene: Hs.31498

Involvement In Disease
Craniofacial dysmorphism, skeletal anomalies and mental retardation syndrome (CFSMR); Glaucoma, primary open angle (POAG)
Protein Families
TMCO1 family
Subcellular Location
Endoplasmic reticulum membrane; Multi-pass membrane protein. Golgi apparatus membrane; Multi-pass membrane protein.
Tissue Specificity
Widely expressed in adult and fetal tissues, with higher levels in thymus, prostate, testis and small intestine and lower levels in brain, placenta, lung and kidney. Present in most tissues in the eye, including the trabecular meshwork and retina (at prot

Q&A

What is TMCO1 and what cellular functions does it perform?

TMCO1 (Transmembrane and Coiled-Coil Domains 1) is a 239 amino acid protein with a molecular weight of approximately 27.1 kDa that functions as a calcium-selective channel in the endoplasmic reticulum (ER). It plays a critical role in calcium homeostasis by preventing calcium stores from overfilling. When the ER experiences calcium overloading, TMCO1 assembles into a homotetramer, forming a functional calcium-selective channel that regulates calcium content in the ER store . TMCO1 is widely expressed across adult and fetal tissues, with notably higher expression levels in thymus, prostate, testis, and small intestine, while lower expression is observed in brain, placenta, lung, and kidney tissues . Research indicates potential involvement of TMCO1 in diseases such as glaucoma and non-syndromic hearing impairment, making it an important target for various cellular and physiological studies .

What are the key specifications of TMCO1 Antibody, FITC conjugated?

The TMCO1 Antibody, FITC conjugated is a rabbit polyclonal antibody specifically designed for the immunodetection of the TMCO1 protein. Its key specifications include:

SpecificationDetails
HostRabbit
ClonalityPolyclonal
ConjugateFITC (Fluorescein isothiocyanate)
ImmunogenRecombinant Human Calcium load-activated calcium channel protein (AA 43-79)
IsotypeIgG
TargetTMCO1
ReactivityHuman
Purification>95%, Protein G purified
FormatLiquid
BufferPreservative: 0.03% Proclin 300, Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Storage-20°C or -80°C (avoid repeated freeze-thaw cycles)
Uniprot IDQ9UM00

This antibody is specifically reactive against human TMCO1, targeting amino acids 43-79 of the protein .

What are the validated applications for TMCO1 Antibody, FITC conjugated?

The TMCO1 Antibody, FITC conjugated has been validated for several research applications, with varying recommended dilutions depending on the specific technique:

ApplicationValidatedRecommended Dilution
ELISAYes1:2000-1:10000
Dot BlotYesAs needed per protocol
Immunofluorescence (IF)Yes1:50-1:200
Immunohistochemistry (IHC)Yes1:500-1:1000
Western Blot (WB)Validated for non-conjugated versionsSpecific validation needed for FITC version

These applications enable researchers to detect and analyze TMCO1 expression and localization in various experimental contexts .

How should the TMCO1 Antibody, FITC conjugated be stored to maintain optimal activity?

For optimal preservation of antibody activity, TMCO1 Antibody, FITC conjugated should be stored at either -20°C or -80°C immediately upon receipt. Since the antibody is FITC-conjugated, it is light-sensitive and should be protected from prolonged exposure to light to prevent photobleaching of the fluorophore. It is crucial to avoid repeated freeze-thaw cycles which can degrade antibody quality and reduce binding efficiency. When working with the antibody, small aliquots should be prepared for single use to minimize repeated freezing and thawing. The antibody is supplied in a buffer containing 50% glycerol, 0.01M PBS (pH 7.4), and 0.03% Proclin 300 as a preservative, which helps maintain stability during storage . When handling the antibody, researchers should be aware that the preservative Proclin 300 is classified as a hazardous substance and should be handled with appropriate precautions by trained laboratory personnel .

What experimental controls are essential when using TMCO1 Antibody, FITC conjugated in immunofluorescence studies?

When conducting immunofluorescence studies with TMCO1 Antibody, FITC conjugated, several critical controls must be implemented to ensure reliable and interpretable results:

  • Negative Controls:

    • Omission of primary antibody while maintaining all other reagents to assess background autofluorescence

    • Isotype control (rabbit IgG-FITC) at equivalent concentration to evaluate non-specific binding

    • Samples known to be negative for TMCO1 expression to confirm specificity

  • Positive Controls:

    • Tissue samples with verified high TMCO1 expression (thymus, prostate, testis, or small intestine) to validate antibody functionality

    • Cell lines with confirmed TMCO1 expression

  • Blocking Controls:

    • Pre-absorption of the antibody with the immunizing peptide (recombinant human calcium load-activated calcium channel protein, AA 43-79) to verify epitope-specific binding

  • Counterstaining:

    • Nuclear counterstain (DAPI or Hoechst) for structural reference

    • ER marker (e.g., calnexin or PDI) to confirm expected subcellular localization of TMCO1 in the endoplasmic reticulum

  • Fluorescence Controls:

    • Single-label controls when performing multi-color immunofluorescence to assess bleed-through

    • Autofluorescence quenching controls, particularly when working with tissues known to have high autofluorescence

The recommended dilution range for immunofluorescence applications is 1:50-1:200, but optimization is necessary for each specific experimental system and tissue type .

How can I optimize immunohistochemistry protocols using TMCO1 Antibody, FITC conjugated for different tissue types?

Optimizing immunohistochemistry protocols with TMCO1 Antibody, FITC conjugated requires tissue-specific adjustments across several parameters:

  • Fixation Method:

    • For fresh frozen tissues: 4% paraformaldehyde for 10-15 minutes is typically optimal

    • For paraffin-embedded tissues: Formalin fixation duration may require adjustment based on tissue density

  • Antigen Retrieval Techniques:

    • Heat-induced epitope retrieval (HIER): Citrate buffer (pH 6.0) at 95-100°C for 20 minutes works well for most tissues

    • For tissues with high collagen content (like prostate): Consider protease-induced epitope retrieval as an alternative

  • Tissue-Specific Dilution Optimization:

    • Starting dilution range: 1:500-1:1000 as recommended

    • Tissue-specific adjustments:

      • Highly expressing tissues (thymus, prostate, testis): May require higher dilutions (1:1000-1:2000)

      • Low expressing tissues (brain, placenta): May require lower dilutions (1:250-1:500)

  • Blocking Parameters:

    • Brain tissue: Additional blocking with 0.3% H₂O₂ followed by 10% normal goat serum to reduce background

    • High-glycoprotein tissues: Include 0.1-0.3% Triton X-100 in blocking solution to improve penetration

  • Signal Amplification:

    • For tissues with low TMCO1 expression: Consider tyramide signal amplification

    • Direct detection of FITC signal vs. anti-FITC antibody enhancement for weak signals

  • Counterstaining Adjustments:

    • Nuclear counterstain intensity should be optimized to not overpower FITC signal

    • Use of contrast dyes should be minimized to avoid interfering with FITC visualization

An exemplary optimized protocol for testis tissue has demonstrated strong membrane and cytoplasmic staining when using the antibody at 1:500 dilution with citrate buffer antigen retrieval and 5% BSA blocking .

What are the potential cross-reactivity concerns with TMCO1 Antibody, FITC conjugated, and how can they be addressed?

Despite the TMCO1 Antibody, FITC conjugated being designed for high specificity, several potential cross-reactivity concerns should be considered and addressed:

  • Protein Homology Considerations:

    • TMCO1 shares structural similarities with other transmembrane and coiled-coil domain-containing proteins, particularly TMCC4, which could lead to cross-reactivity

    • The antibody targets amino acids 43-79 of human TMCO1, a region that should be assessed for sequence homology with other proteins using bioinformatics tools like BLAST

  • Experimental Validation Approaches:

    • Western blot validation: Perform with multiple cell/tissue types to confirm a single band at the expected 27.1 kDa size

    • Knockout/knockdown controls: Use TMCO1 knockout or siRNA-mediated knockdown samples to confirm signal specificity

    • Competitive blocking: Pre-incubate antibody with excess immunizing peptide to block specific binding and assess remaining signal as non-specific

    • Dual-labeling verification: Co-stain with a different TMCO1 antibody targeting a separate epitope to confirm co-localization

  • Species Cross-Reactivity:

    • The antibody is specifically validated for human samples

    • Although TMCO1 orthologs exist in mouse, rat, bovine, frog, zebrafish, chimpanzee, and chicken , cross-species reactivity requires explicit validation

    • If using in non-human samples, preliminary validation using western blot or IHC with appropriate positive controls is essential

  • Recommended Mitigation Strategies:

    • Increase antibody dilution (1:2000-1:10000 for ELISA) to reduce non-specific binding

    • Optimize blocking conditions with 5% BSA or 5% normal serum from the same species as the secondary antibody

    • Extend washing steps (5x5 minutes) to remove weakly bound antibody

    • Include 0.1% Tween-20 in wash buffers to reduce hydrophobic interactions

By implementing these validation and optimization strategies, researchers can significantly minimize cross-reactivity concerns and ensure specific detection of TMCO1.

How should I design experiments to investigate TMCO1's role in calcium homeostasis using the FITC-conjugated antibody?

Designing experiments to investigate TMCO1's role in calcium homeostasis requires a multi-faceted approach:

  • Colocalization Studies:

    • Combine TMCO1 Antibody, FITC conjugated (1:50-1:200 dilution) with ER markers (e.g., calnexin-Texas Red) to confirm localization

    • Use confocal microscopy to visualize TMCO1 distribution in relation to calcium storage organelles

    • Quantify colocalization coefficients (Pearson's or Mander's) to assess spatial relationships

  • Calcium Imaging Experiments:

    • Transfect cells with calcium indicators (e.g., GCaMP6) alongside TMCO1 manipulation

    • Correlate TMCO1 expression (detected via antibody in fixed samples) with calcium dynamics

    • Experimental design:

    GroupTreatmentTMCO1 DetectionCalcium Measurement
    ControlNormal conditionsTMCO1 Antibody, FITCFura-2 AM or GCaMP6
    ER StressThapsigargin (1-2 μM)TMCO1 Antibody, FITCFura-2 AM or GCaMP6
    TMCO1 KnockdownsiRNA against TMCO1TMCO1 Antibody, FITCFura-2 AM or GCaMP6
    TMCO1 OverexpressionTMCO1 plasmid transfectionTMCO1 Antibody, FITCFura-2 AM or GCaMP6
  • TMCO1 Functional Analysis:

    • Induce ER stress with thapsigargin or tunicamycin to activate TMCO1 channel function

    • Monitor TMCO1 oligomerization (homotetramer formation) using native PAGE followed by immunoblotting

    • Correlate TMCO1 expression patterns (using IF with the FITC-conjugated antibody) with calcium flux measurements before and after ER stress

  • Proximity Ligation Assays:

    • Use the TMCO1 Antibody, FITC conjugated in combination with antibodies against proposed interaction partners

    • Assess protein-protein interactions that may regulate TMCO1's calcium channel activity

    • Quantify interaction signals under normal and ER stress conditions

  • Time-Course Analysis:

    • Examine TMCO1 redistribution during calcium flux dynamics at different timepoints

    • Fix cells at 0, 5, 15, 30, 60 minutes post-calcium perturbation and stain with TMCO1 Antibody, FITC conjugated

    • Analyze changes in localization pattern and intensity during calcium store depletion and refilling

These experimental approaches allow comprehensive investigation of TMCO1's dynamic role in calcium homeostasis while leveraging the visualization capabilities of the FITC-conjugated antibody .

What are common technical challenges when using TMCO1 Antibody, FITC conjugated, and how can they be resolved?

Researchers frequently encounter several technical challenges when working with TMCO1 Antibody, FITC conjugated. Here are the most common issues and their recommended solutions:

  • High Background Fluorescence:

    • Problem: Non-specific binding or autofluorescence obscuring specific TMCO1 signal

    • Solutions:

      • Increase antibody dilution (start with 1:200 for IF and adjust as needed)

      • Extend blocking time to 2 hours with 5% BSA or 10% normal serum

      • Include 0.1% Triton X-100 in blocking buffer to reduce non-specific hydrophobic interactions

      • Use Sudan Black B (0.1-0.3%) treatment for 10 minutes to quench tissue autofluorescence

  • Weak or Absent Signal:

    • Problem: Insufficient antibody binding or target accessibility

    • Solutions:

      • Optimize antigen retrieval: Try different methods (heat-induced with citrate buffer pH 6.0 or EDTA buffer pH 9.0)

      • Decrease antibody dilution (try 1:50 for IF)

      • Extend primary antibody incubation to overnight at 4°C

      • Enhance signal with anti-FITC amplification systems if direct FITC visualization is weak

  • Photobleaching:

    • Problem: Rapid loss of FITC fluorescence during imaging

    • Solutions:

      • Add anti-fade reagents to mounting medium (e.g., ProLong Gold)

      • Minimize exposure to excitation light during microscopy

      • Use oxygen scavengers in imaging buffer

      • Consider using alternative detection methods like anti-FITC antibodies conjugated to more photostable fluorophores

  • Inconsistent Staining Patterns:

    • Problem: Variable results between experiments or samples

    • Solutions:

      • Standardize fixation protocols (4% paraformaldehyde for 15 minutes at room temperature)

      • Ensure consistent antibody handling (avoid repeated freeze-thaw cycles)

      • Prepare fresh dilutions for each experiment

      • Include positive control samples in each experiment to verify antibody performance

  • Non-specific Nuclear Staining:

    • Problem: Unexpected nuclear signal despite TMCO1's ER/Golgi localization

    • Solutions:

      • Increase washing stringency (5x10 minutes with 0.1% Tween-20 in PBS)

      • Pre-absorb antibody with nuclear extracts

      • Verify specificity using a TMCO1 knockout or knockdown control

      • Confirm results with a non-conjugated TMCO1 antibody targeting a different epitope

By systematically addressing these challenges, researchers can significantly improve the quality and reliability of experiments using TMCO1 Antibody, FITC conjugated .

How can I quantitatively analyze TMCO1 expression patterns in different subcellular compartments using the FITC-conjugated antibody?

Quantitative analysis of TMCO1 subcellular distribution requires a systematic approach combining appropriate imaging techniques with robust analytical methods:

  • Optimized Image Acquisition Protocol:

    • Use confocal microscopy with appropriate filter sets for FITC (excitation ~495nm, emission ~520nm)

    • Maintain consistent acquisition parameters across all samples:

      • Laser power: Typically 2-5% for FITC to avoid photobleaching

      • Gain: Optimize to utilize full dynamic range without saturation

      • Pinhole: 1 Airy unit for optimal resolution

      • Z-stack interval: 0.5-1μm depending on cell thickness

    • Include co-staining with compartment markers:

      • ER marker: anti-calnexin or anti-PDI

      • Golgi marker: anti-GM130

      • Nuclear marker: DAPI

  • Quantification Methodologies:

    • Colocalization Analysis:

      • Calculate Pearson's correlation coefficient between TMCO1-FITC and organelle markers

      • Determine Mander's overlap coefficients to assess proportion of TMCO1 in each compartment

      • Example results table format:

      Subcellular CompartmentPearson's CoefficientMander's M1 (TMCO1 overlapping marker)
      Endoplasmic Reticulum0.82 ± 0.060.76 ± 0.08
      Golgi Apparatus0.45 ± 0.090.22 ± 0.05
      Nucleus0.12 ± 0.040.03 ± 0.01
    • Intensity-Based Segmentation:

      • Define regions of interest (ROIs) based on organelle markers

      • Measure integrated TMCO1-FITC intensity within each compartment

      • Normalize to compartment volume or area

    • Distance Mapping:

      • Generate distance maps from organelle boundaries

      • Plot TMCO1-FITC intensity as a function of distance from organelle centers

  • Comparison Across Experimental Conditions:

    • Standardize fluorescence intensity using calibration beads

    • Normalize TMCO1-FITC signal to total cellular protein or housekeeping protein expression

    • Apply appropriate statistical tests (ANOVA with post-hoc tests) to compare conditions

  • Advanced Analytical Approaches:

    • FRET Analysis: If combining with FRET-capable fluorophores to assess protein-protein interactions

    • FRAP (Fluorescence Recovery After Photobleaching): To assess TMCO1 mobility in different compartments

    • Single Molecule Localization Microscopy: For super-resolution analysis of TMCO1 distribution

  • Software Recommendations:

    • ImageJ/FIJI with JACoP plugin for colocalization analysis

    • CellProfiler for automated segmentation and intensity quantification

    • Imaris or Volocity for 3D visualization and analysis

This comprehensive approach enables rigorous quantitative assessment of TMCO1 subcellular distribution patterns while accounting for experimental variability .

How can TMCO1 Antibody, FITC conjugated be used to investigate the relationship between TMCO1 dysfunction and disease states?

TMCO1 Antibody, FITC conjugated offers valuable opportunities for investigating the pathological implications of TMCO1 dysfunction across multiple disease contexts:

  • Glaucoma Research Applications:

    • Analyze TMCO1 expression patterns in trabecular meshwork and retinal ganglion cells from normal vs. glaucomatous eyes

    • Correlate TMCO1 localization changes with intraocular pressure measurements

    • Perform co-staining with markers of ER stress to assess whether TMCO1 dysfunction precedes cellular damage

    • Experimental design should include tissue samples from:

      • Normal controls

      • Primary open-angle glaucoma patients

      • Animal models with TMCO1 mutations

  • Non-syndromic Hearing Impairment Studies:

    • Examine TMCO1 distribution in cochlear hair cells and spiral ganglion neurons

    • Assess potential alterations in calcium handling using calcium imaging in conjunction with TMCO1 immunofluorescence

    • Compare TMCO1 expression patterns between affected and unaffected tissues

  • TMCO1 Defect Syndrome Investigations:

    • Characterize TMCO1 expression and localization in patient-derived cells carrying TMCO1 mutations

    • Document alterations in ER structure and calcium homeostasis associated with pathogenic variants

    • Create a scoring system for TMCO1 mislocalization severity that correlates with clinical phenotypes

  • Calcium Dysregulation in Neurodegenerative Diseases:

    • Analyze TMCO1 distribution in brain tissues from Alzheimer's and Parkinson's disease patients

    • Correlate TMCO1 expression patterns with markers of ER stress and calcium dysregulation

    • Implement dual-labeling approaches combining TMCO1-FITC with markers of aggregated proteins (amyloid-β, α-synuclein)

  • TMCO1 in Cancer Biology:

    • Evaluate TMCO1 expression across tumor grades and stages in tissue microarrays

    • Correlate expression patterns with markers of ER stress and calcium signaling

    • Develop quantitative scoring methods for altered TMCO1 localization in cancer progression:

    TMCO1 PatternDescriptionAssociation with Prognosis
    NormalPredominantly ER/Golgi localizationBetter outcome
    DiffuseSpread throughout cytoplasmIntermediate prognosis
    AggregatedPunctate structuresPoor prognosis
    NuclearAberrant nuclear localizationAssociated with advanced disease

The FITC conjugation enables direct visualization without secondary antibody requirements, allowing for more streamlined multiplexed staining protocols with other disease markers. This facilitates comprehensive investigation of TMCO1's role in pathological processes while minimizing technical complexity .

What novel research approaches combine TMCO1 Antibody, FITC conjugated with other advanced cellular imaging techniques?

Integrating TMCO1 Antibody, FITC conjugated with cutting-edge imaging technologies opens new avenues for investigating TMCO1 biology:

  • Super-Resolution Microscopy Applications:

    • STORM (Stochastic Optical Reconstruction Microscopy):

      • Achieve 20-30nm resolution of TMCO1 distribution within ER subdomains

      • Requires specialized imaging buffers compatible with FITC fluorophore properties

      • Protocol modification: Use higher antibody concentrations (1:20-1:50) to ensure adequate labeling density

    • STED (Stimulated Emission Depletion) Microscopy:

      • Resolve TMCO1 tetrameric complexes within membrane structures

      • FITC is compatible with commonly available STED systems using 592nm depletion lasers

      • Can achieve 50-80nm resolution of TMCO1 organization in the ER membrane

  • Live-Cell Imaging Approaches:

    • Antibody Fragment Delivery Systems:

      • Convert TMCO1 Antibody, FITC conjugated to Fab fragments for cell penetration

      • Combine with membrane-permeabilizing peptides for intracellular delivery

      • Monitor real-time changes in TMCO1 distribution during calcium flux events

    • Correlative Light-Electron Microscopy (CLEM):

      • Visualize TMCO1-FITC signal by fluorescence microscopy

      • Process the same sample for electron microscopy

      • Precisely localize TMCO1 within ultrastructural context of ER and Golgi membranes

  • Multi-Dimensional Imaging Techniques:

    • Lattice Light-Sheet Microscopy:

      • Capture rapid 3D volumes of TMCO1 distribution with minimal phototoxicity

      • Track dynamic changes in TMCO1 organization during ER stress responses

      • Compatible with FITC fluorophore when using appropriate excitation wavelengths

    • Expansion Microscopy:

      • Physically expand samples 4-10x using hydrogel embedding

      • Achieve effective super-resolution imaging of TMCO1 with standard confocal microscopy

      • Protocol adaptation: Ensure antibody is applied post-expansion to maintain epitope accessibility

  • Multiplexed Imaging Strategies:

    • Cyclic Immunofluorescence:

      • Perform sequential rounds of staining, imaging, and signal quenching

      • Map TMCO1 in relation to >20 other proteins within the same sample

      • FITC signal can be efficiently quenched with sodium borohydride treatment between cycles

    • Mass Cytometry Imaging:

      • Conjugate anti-TMCO1 with metal isotopes instead of FITC

      • Simultaneously visualize dozens of proteins in tissue sections

      • Compare with traditional FITC-based imaging to validate findings

  • Functional Integration Approaches:

    • Optogenetic Calcium Manipulation with TMCO1 Imaging:

      • Express optogenetic calcium modulators (e.g., OptoSTIM1)

      • Visualize TMCO1-FITC redistribution following light-induced calcium release

      • Quantify temporal relationship between calcium flux and TMCO1 reorganization

These innovative approaches significantly enhance the spatial and temporal resolution of TMCO1 studies, enabling unprecedented insights into its molecular organization and dynamic behavior in cellular contexts .

How can computational analysis and machine learning be applied to TMCO1 immunofluorescence data generated with the FITC-conjugated antibody?

Advanced computational approaches can extract deeper insights from TMCO1 immunofluorescence imaging data:

  • Automated Image Segmentation and Analysis:

    • Deep Learning-Based Cell Segmentation:

      • Train convolutional neural networks (CNNs) to identify cell boundaries and subcellular compartments

      • Automatically extract TMCO1-FITC distribution patterns across thousands of cells

      • Implementation example: U-Net architecture with transfer learning from pre-trained models

    • Quantitative Feature Extraction:

      • Develop algorithms to automatically measure:

        • TMCO1 expression levels (integrated intensity)

        • Subcellular distribution patterns (texture features)

        • Colocalization with organelle markers (correlation coefficients)

      • Generate multi-parameter feature vectors for each cell:

      Cell IDTMCO1 Mean IntensityER ColocalizationGolgi ColocalizationTMCO1 Pattern Class
      1156.70.820.23Reticular
      289.30.440.67Punctate
      3203.50.910.18Reticular
      ...............
  • Pattern Recognition and Classification:

    • Unsupervised Learning for Pattern Discovery:

      • Apply clustering algorithms (k-means, hierarchical clustering) to identify distinct TMCO1 distribution patterns

      • Discover novel TMCO1 localization signatures associated with cellular states

      • Dimensionality reduction techniques (t-SNE, UMAP) to visualize relationships between patterns

    • Supervised Classification of Cell States:

      • Train machine learning models to identify:

        • Normal vs. pathological TMCO1 distribution

        • Cell cycle-dependent changes in TMCO1 organization

        • Response patterns to ER stress inducers

      • Implement random forest or support vector machine classifiers with cross-validation

  • Temporal Dynamics Analysis:

    • Tracking TMCO1 Reorganization Over Time:

      • Develop particle tracking algorithms for TMCO1-positive structures

      • Characterize mobility, fusion/fission events, and trajectory analysis

      • Correlate dynamic behavior with calcium fluctuations

    • Predictive Modeling of TMCO1 Responses:

      • Time-series analysis to predict TMCO1 reorganization following cellular perturbations

      • Differential equation models integrating calcium dynamics and TMCO1 distribution

  • Multi-Omics Data Integration:

    • Correlation with Transcriptomic Data:

      • Integrate TMCO1 protein distribution patterns with gene expression profiles

      • Identify transcriptional signatures associated with altered TMCO1 localization

      • Map regulatory networks controlling TMCO1 expression and trafficking

    • Integration with Calcium Imaging Data:

      • Develop computational frameworks to correlate calcium dynamics with TMCO1 distribution

      • Implement transfer entropy analysis to infer causal relationships

  • Deployment and Accessibility:

    • Web-Based Analysis Platforms:

      • Create interactive tools for TMCO1 image analysis accessible to researchers

      • Implement standardized pipelines for consistent analysis across laboratories

      • Enable comparative analysis of TMCO1 patterns across different experimental conditions and disease models

    • Open-Source Analysis Packages:

      • Develop specialized software tools for TMCO1 imaging data

      • Facilitate integration with existing platforms like CellProfiler, QuPath, or ImageJ/FIJI

These computational approaches transform descriptive TMCO1 immunofluorescence data into quantitative insights, enabling hypothesis generation and testing at scales previously unattainable with manual analysis methods .

What are the current limitations in TMCO1 antibody research, and what future developments might address these challenges?

Current research utilizing TMCO1 antibodies, including the FITC-conjugated variant, faces several significant limitations that impact experimental outcomes and interpretations. These challenges span technical, biological, and methodological domains, with several promising developments on the horizon to address them.

The primary technical limitations include antibody specificity concerns, particularly regarding potential cross-reactivity with structurally similar proteins like TMCC4. The current antibody targets amino acids 43-79 of human TMCO1, but comprehensive cross-reactivity testing against all potential homologous proteins is often lacking . Additionally, the FITC conjugate, while convenient for direct visualization, suffers from photobleaching during extended imaging sessions and may have reduced sensitivity compared to signal amplification methods using unconjugated primary antibodies.

From a biological perspective, current antibodies predominantly focus on human TMCO1, with limited validated cross-species reactivity. This restricts comparative studies across model organisms despite TMCO1's evolutionary conservation . Furthermore, existing antibodies primarily detect total TMCO1 protein without distinguishing between monomeric and the functionally critical tetrameric forms that constitute active calcium channels.

Methodologically, standardized protocols for quantitative analysis of TMCO1 distribution and function remain underdeveloped. This creates challenges in comparing results across studies and laboratories, potentially contributing to reproducibility issues in the field.

Future developments likely to address these limitations include:

  • Next-generation antibody engineering – Development of recombinant antibodies with precisely defined epitopes and extensively validated specificity profiles to minimize cross-reactivity concerns

  • Conformation-specific antibodies – Creation of antibodies that selectively recognize the active tetrameric TMCO1 channel configuration to directly assess functional states

  • Brighter, more photostable fluorophore conjugates – Replacement of FITC with superior fluorophores like Alexa Fluor dyes or quantum dots to enhance sensitivity and reduce photobleaching

  • Cross-species validated reagents – Development of antibodies targeting highly conserved TMCO1 epitopes to facilitate comparative studies across model organisms

  • Multiplexed detection systems – Integration with advanced multiplexing technologies to simultaneously visualize TMCO1 alongside multiple cellular markers

  • Standardized quantitative analysis pipelines – Establishment of community-accepted protocols for TMCO1 imaging data analysis to improve reproducibility and cross-study comparisons

These advancements will significantly enhance our ability to investigate TMCO1's diverse biological functions and its roles in various pathological conditions, ultimately contributing to a more comprehensive understanding of calcium homeostasis regulation in normal physiology and disease .

What emerging research questions about TMCO1 biology can be addressed using the FITC-conjugated antibody?

The TMCO1 Antibody, FITC conjugated opens avenues for addressing several emerging and compelling research questions regarding TMCO1 biology:

  • TMCO1's Role in Specialized Cell Types:

    • How does TMCO1 distribution and function differ in highly specialized cells with unique calcium requirements, such as neurons, cardiac myocytes, and pancreatic β-cells?

    • Does TMCO1 interact with tissue-specific calcium handling machinery in these specialized contexts?

    • The FITC-conjugated antibody enables direct visualization in complex tissues without secondary antibody complications, facilitating such comparative studies.

  • TMCO1 in Cellular Stress Responses:

    • How does TMCO1 organization change during various cellular stresses beyond ER calcium overload?

    • What is the temporal relationship between TMCO1 reorganization and the activation of canonical stress response pathways?

    • FITC conjugation allows for simpler multiplexed staining with markers of stress pathways to establish these relationships.

  • Developmental Regulation of TMCO1:

    • How does TMCO1 expression and localization change during embryonic and postnatal development?

    • Is TMCO1 involved in developmental calcium signaling events crucial for organ formation?

    • The direct detection capability simplifies developmental time-course studies requiring analysis of multiple time points.

  • TMCO1 in Aging and Senescence:

    • Does TMCO1 function deteriorate with cellular aging, contributing to calcium dysregulation in senescent cells?

    • Can TMCO1 expression or localization serve as a biomarker for cellular aging?

    • The antibody's human-specific reactivity makes it valuable for studying human aging processes.

  • TMCO1 in Intercellular Communication:

    • Does TMCO1-mediated calcium regulation affect paracrine signaling or other forms of cell-to-cell communication?

    • Is TMCO1 distribution altered at cell-cell junctions or in specialized communication structures?

    • FITC conjugation facilitates visualization alongside membrane markers in complex multicellular contexts.

  • Post-translational Modifications of TMCO1:

    • How do post-translational modifications regulate TMCO1 channel assembly and function?

    • Can these modifications be correlated with specific cellular states or pathological conditions?

    • The antibody could be used in conjunction with modification-specific antibodies to establish these relationships.

  • TMCO1 in Mitochondria-ER Contact Sites:

    • Does TMCO1 play a role in calcium transfer at mitochondria-ER contact sites?

    • Is TMCO1 enriched at these critical junctional regions?

    • The direct fluorescence detection simplifies co-localization studies with mitochondrial markers.

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