torZ Antibody

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Product Specs

Buffer
Preservative: 0.03% Proclin 300
Composition: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
torZ antibody; bisZ antibody; Z2925 antibody; ECs2582 antibody; Trimethylamine-N-oxide reductase 2 antibody; TMAO reductase 2 antibody; Trimethylamine oxidase 2 antibody; EC 1.7.2.3 antibody
Target Names
torZ
Uniprot No.

Target Background

Function
Catalyzes the reduction of trimethylamine-N-oxide (TMAO) to trimethylamine. This anaerobic reaction is coupled to energy-yielding reactions. The enzyme can also reduce other N- and S-oxide compounds, such as 4-methylmorpholine-N-oxide and biotin sulfoxide (BSO), although with lower catalytic efficiency.
Database Links

KEGG: ece:Z2925

STRING: 155864.Z2925

Protein Families
Prokaryotic molybdopterin-containing oxidoreductase family
Subcellular Location
Periplasm.

Q&A

What is toripalimab and what are its key characteristics?

Toripalimab is a humanized anti-PD-1 monoclonal antibody that belongs to the human IgG1 subclass. It binds to the FG loop of PD-1 with 12-fold higher binding affinity than pembrolizumab (a widely used anti-PD-1 antibody). This high-affinity binding effectively blocks the interaction between PD-1 and its ligands, preventing the negative regulation of T cell activation. Toripalimab promotes significantly more Th1- and myeloid-derived inflammatory cytokine responses in healthy human PBMCs in vitro, demonstrating its potent immunomodulatory capabilities .

How does the structure of toripalimab relate to its function?

Like other antibodies, toripalimab consists of two heavy chains and two light chains joined together by disulfide bonds. The antigen-binding sites at the top of the structure specifically target the PD-1 receptor, while the constant region (Fc portion) mediates effector functions. When toripalimab binds to PD-1, it induces lower levels of SHP1 and SHP2 recruitment (negative regulators of T cell activation) in Jurkat T cells expressing PD-1, thus enhancing T cell activation and immune response against tumor cells .

What distinguishes toripalimab from other anti-PD-1 antibodies?

Toripalimab has several distinguishing features compared to other anti-PD-1 antibodies:

  • It binds specifically to the FG loop of PD-1 with significantly higher affinity

  • It induces several unique genes in IFN-γ and immune cell pathways

  • It shows different kinetics of activation in ex vivo systems

  • It significantly enhances IFN-γ signature in tumor cells

  • It demonstrates clinical efficacy irrespective of PD-L1 status, which expands its potential therapeutic applications

How should researchers determine the optimal concentration of toripalimab for experiments?

Determining the optimal antibody concentration is critical for reliable experimental results. Researchers should follow these methodological steps:

  • Perform a titration experiment that mirrors the final experimental protocol (including staining procedures)

  • Consider adding a viability dye to eliminate confounding effects from dead cells

  • Create a dilution series and measure signal intensity for each concentration

  • Calculate the signal-to-noise ratio (SI) for each concentration

  • Plot antibody volume versus median fluorescent intensity and calculate the best fit line

  • Select a concentration that provides maximum separation between positive and negative populations

  • Choose a concentration slightly above the minimum effective dose to account for pipetting errors

The goal is to identify the concentration that yields the highest signal-to-noise measurement while minimizing antibody usage .

What techniques are most effective for evaluating toripalimab binding kinetics?

Researchers evaluating toripalimab binding kinetics should employ:

  • Surface Plasmon Resonance (SPR) to determine association and dissociation rates

  • Enzyme-linked immunosorbent assay (ELISA) for binding affinity assessment

  • Flow cytometry with titration curves to evaluate cellular binding

  • Competitive binding assays to compare with other anti-PD-1 antibodies

  • Analysis using Michaelis-Menten kinetics to calculate binding parameters (Vmax, KM)

For instance, toripalimab's binding affinity to PD-1 was determined to have a dissociation constant (Kd value) of 2.5 × 10⁻⁹M, which is considerably stronger than pembrolizumab's affinity .

How can researchers effectively evaluate the specificity of toripalimab?

To evaluate toripalimab's specificity, researchers should:

  • Test binding against a panel of related and unrelated receptors

  • Perform blocking experiments with known PD-1 ligands

  • Use PD-1 knockout cell lines as negative controls

  • Conduct immunoprecipitation followed by mass spectrometry

  • Employ cross-reactivity tests against PD-1 from different species

  • Analyze binding to different domains of PD-1 through mutagenesis studies

  • Use flow cytometry with cells expressing or lacking PD-1

What are the best approaches for investigating toripalimab's effects on tumor microenvironment?

Researchers studying toripalimab's effects on the tumor microenvironment should consider:

  • Single-cell RNA sequencing to characterize changes in immune cell populations

  • Multiplex immunohistochemistry to visualize spatial relationships between immune and tumor cells

  • Cytokine profiling to measure changes in inflammatory mediators

  • Flow cytometry to quantify immune cell activation status

  • Ex vivo tumor explant cultures to study dynamic responses

  • RNA-seq to identify gene expression changes in both tumor and immune cells

  • Metabolic profiling to assess changes in the metabolic landscape of the tumor microenvironment

How should researchers design combination studies with toripalimab?

When designing combination studies with toripalimab, researchers should:

  • Select rational combination partners based on complementary mechanisms of action

  • Consider sequential versus concurrent administration protocols

  • Establish appropriate dosing schedules to minimize toxicity

  • Include proper controls (single agents, standard of care)

  • Stratify based on relevant biomarkers (beyond PD-L1)

  • Measure immune parameters before, during, and after treatment

  • Assess potential synergistic or antagonistic effects through detailed pharmacodynamic studies

How should researchers interpret conflicting results when comparing toripalimab with other anti-PD-1 antibodies?

When faced with conflicting results in comparative studies, researchers should:

  • Evaluate methodological differences between studies (antibody concentrations, experimental conditions, cell types)

  • Consider target cell heterogeneity and variability in PD-1 expression levels

  • Assess differences in binding epitopes and their accessibility

  • Examine downstream signaling pathway variations

  • Review statistical power and analysis approaches

  • Consider differences in experimental models (in vitro vs. ex vivo vs. in vivo)

  • Validate findings using multiple complementary techniques

What statistical approaches are most appropriate for analyzing toripalimab efficacy data?

For analyzing toripalimab efficacy data, researchers should employ:

  • Kaplan-Meier survival analysis with log-rank tests for time-to-event outcomes

  • Cox proportional hazards models to account for covariates

  • Repeated measures ANOVA for longitudinal data

  • Mixed-effects models to address patient heterogeneity

  • Subgroup analyses stratified by biomarker status

  • Multivariate analyses to identify predictive factors

  • Bayesian approaches for small sample sizes

The table below summarizes efficacy data from clinical trials of tocilizumab (another therapeutic antibody) to illustrate how such data should be presented:

TrialGroupsSample sizeStudy durationACR20ACR50ACR70DAS remission (%)
OPTIONPlacebo + MTX62324 weeks261121
TCZ 4 mg/kg + MTX48311213
TCZ 8 mg/kg + MTX59442227
TOWARDPlacebo + MTX121624 weeks25933
TCZ 8 mg/kg + MTX61382130
AMBITIONMTX67324 weeks53341512
TCZ 8 mg/kg70442834

Similar rigorous analysis should be applied to toripalimab efficacy data .

What is the significance of toripalimab's binding to the FG loop of PD-1?

Toripalimab's binding to the FG loop of PD-1 has several important implications:

  • The FG loop represents a distinct epitope from that targeted by pembrolizumab and other anti-PD-1 antibodies

  • This binding mechanism results in 12-fold higher affinity to PD-1

  • It induces different conformational changes in the PD-1 receptor

  • These changes affect downstream signaling pathways differently, with lower recruitment of negative regulators SHP1 and SHP2

  • The distinct binding may explain toripalimab's efficacy irrespective of PD-L1 status

Understanding this epitope-specific binding is crucial for predicting therapeutic outcomes and potential combination strategies .

How can epitope mapping techniques be applied to study toripalimab binding sites?

Researchers can employ various epitope mapping techniques to study toripalimab binding:

  • X-ray crystallography of the toripalimab-PD-1 complex

  • Hydrogen-deuterium exchange mass spectrometry

  • Alanine scanning mutagenesis of PD-1

  • Competition binding assays with other anti-PD-1 antibodies

  • ELISA with peptide fragments of PD-1

  • Phage display with randomized peptide libraries

  • Computational modeling and molecular dynamics simulations

Similar approaches have been successful in identifying novel epitopes in other contexts, such as the pGlu-CSP epitope on malaria parasites that is not targeted by current vaccines .

What biomarkers beyond PD-L1 should researchers investigate for predicting toripalimab response?

Given toripalimab's efficacy irrespective of PD-L1 status, researchers should investigate:

  • Tumor mutational burden (TMB) as a predictor of neoantigen load

  • Interferon-gamma gene signature expression

  • T cell infiltration patterns and spatial distribution

  • Myeloid cell composition within the tumor microenvironment

  • Gut microbiome composition

  • Circulating immune cell populations

  • Soluble checkpoint molecules in peripheral blood

  • Tumor metabolic profiles

Investigating these biomarkers could help identify patient subgroups most likely to benefit from toripalimab therapy and guide rational combination strategies .

How should researchers approach the development of novel therapeutic antibodies based on toripalimab's design principles?

Researchers developing novel therapeutic antibodies based on toripalimab should:

  • Target unique epitopes with structural and functional significance

  • Optimize binding affinity without compromising specificity

  • Engineer antibodies for favorable pharmacokinetic properties

  • Conduct comprehensive in vitro functional studies to characterize immune activation

  • Employ ex vivo systems with patient-derived samples for translational insights

  • Design rational humanization strategies to minimize immunogenicity

  • Develop companion biomarkers in parallel with antibody development

The approach used to develop toripalimab, with its unique binding properties and functional attributes, provides a valuable template for developing next-generation therapeutic antibodies with enhanced efficacy .

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