TP53 (Ab-15) Antibody

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Description

Introduction to TP53 (Ab-15) Antibody

TP53 (Ab-15) antibody is a rabbit polyclonal antibody designed to target a specific epitope (P-L-S-Q-E) corresponding to amino acids 13-17 of the human p53 protein . The p53 protein, encoded by the TP53 gene, is a critical tumor suppressor that responds to diverse cellular stresses by regulating target genes involved in cell cycle arrest, apoptosis, senescence, DNA repair, and metabolism . Given p53's central role in preventing cancer development, antibodies targeting different epitopes of p53, including TP53 (Ab-15), have become essential tools in cancer research and diagnostics .

The TP53 (Ab-15) antibody recognizes the amino-terminal region of p53, which contains the transcriptional activation domain. This domain is critical for p53's interaction with the transcription machinery and is subject to various post-translational modifications that regulate p53 function . By binding to this region, the TP53 (Ab-15) antibody allows researchers to detect total p53 protein levels regardless of most post-translational modifications.

Validated Applications in Research

The TP53 (Ab-15) antibody has been validated for multiple experimental applications, providing researchers with a versatile tool for studying p53 expression, localization, and function. The following applications have been thoroughly validated:

Western Blotting (WB)

The TP53 (Ab-15) antibody effectively detects endogenous levels of p53 protein in Western blot applications, with recommended dilutions ranging from 1:500 to 1:1000 . Western blotting with this antibody reveals a band at approximately 53 kDa, corresponding to the full-length p53 protein. The antibody has been validated using extracts from various human cell lines, including MDA and JK cells .

Immunohistochemistry (IHC)

For IHC applications, the TP53 (Ab-15) antibody is typically used at dilutions between 1:50 and 1:200 . It has been successfully employed to detect p53 expression in paraffin-embedded human tissue samples, including breast carcinoma tissue . The specificity of the antibody in IHC applications has been confirmed using preincubation with blocking peptides, which abolishes the staining pattern .

Immunofluorescence (IF)

The TP53 (Ab-15) antibody has been validated for immunofluorescence applications at dilutions of 1:100 to 1:200 . It effectively labels p53 protein in methanol-fixed cells, such as HeLa cells, enabling researchers to visualize the subcellular localization of p53 .

Enzyme-Linked Immunosorbent Assay (ELISA)

Although less commonly used for this application, the TP53 (Ab-15) antibody has also been validated for use in ELISA systems, providing another method for quantitative detection of p53 protein levels .

Role in Understanding p53 Function

The development and application of p53 antibodies, including TP53 (Ab-15), have significantly advanced our understanding of p53 function in normal cellular processes and carcinogenesis. Antibodies targeting different regions of p53 have revealed important insights into its structure-function relationships and regulatory mechanisms.

Modulation of p53 Activity

Studies using various p53 antibodies have demonstrated that antibody binding can either activate or inhibit p53 function, depending on the epitope recognized . For example, antibodies to the carboxyl-terminal 30 amino acids of p53, such as PAb421 and PAb122, can significantly enhance p53's DNA-binding ability by neutralizing the negative regulatory effect of this region . Conversely, antibodies targeting the amino-terminal region, such as DO-1 and PAb1801, can block p53-dependent transcription . While the specific effects of TP53 (Ab-15) antibody on p53 function have not been extensively characterized, its binding to the N-terminal transactivation domain suggests potential effects on p53's interactions with the transcriptional machinery.

Comparison with Other p53 Antibodies

The TP53 (Ab-15) antibody is part of a broader family of p53 antibodies that recognize different epitopes and conformations of the protein. Understanding the similarities and differences between these antibodies is crucial for selecting the appropriate reagent for specific experimental applications.

Antibodies Recognizing Different p53 Epitopes

Various commercially available p53 antibodies target distinct regions of the protein:

Antibody CloneRegion RecognizedHuman p53 EpitopeConformation DetectedApplications
TP53 (Ab-15)N-terminusaa.13-17 (P-L-S-Q-E)Total p53WB, IHC, IF, ELISA
DO-1N-terminusaa.20-25Total p53WB, IP, IHC, IF
PAb1801N-terminusaa.46-55Total p53WB, IP, IHC
PAb240Core domainaa.211-217 (TFRHSVV)Mutant p53WB, IP, IHC
PAb1620Core domainaa.145-157Wild-type p53WB, IP
PAb421C-terminusaa.372-382Total p53WB, IP

This comparison highlights the diversity of p53 antibodies available, each with unique properties that make them suitable for different experimental applications . While some antibodies, like PAb240 and PAb1620, can distinguish between mutant and wild-type conformations of p53, the TP53 (Ab-15) antibody recognizes total p53 protein regardless of its conformational state .

Phospho-Specific p53 Antibodies

In addition to antibodies that recognize total p53, phospho-specific antibodies have been developed to detect p53 that has undergone specific post-translational modifications. For example, antibodies recognizing p53 phosphorylated at serine 15 (p-p53-S15) have been crucial in understanding how p53 is activated in response to DNA damage . These phospho-specific antibodies provide complementary information to that obtained using total p53 antibodies like TP53 (Ab-15).

Clinical Relevance of p53 Antibodies

While the TP53 (Ab-15) antibody is primarily a research tool, p53 antibodies have significant clinical applications, particularly in cancer diagnostics and prognostics.

Serum p53 Antibodies as Cancer Biomarkers

Interestingly, many cancer patients develop autoantibodies against p53 (serum p53 antibodies or S-p53 Abs) that can be detected in their blood . These autoantibodies typically arise when the p53 protein accumulates in cancer cells due to mutations that increase its stability. A large-scale study involving 1085 patients with various types of malignant tumors found that 20.4% were positive for S-p53 Abs, with the highest prevalence in head and neck carcinoma (32%), esophageal carcinoma (30%), colorectal carcinoma (24%), and carcinoma of the uterus (23%) .

Prognostic Value of p53 Detection

Detection of p53 protein expression in tumor samples using antibodies like TP53 (Ab-15) can provide valuable prognostic information. For example, a study examining oral squamous cell carcinoma found that serum anti-p53 antibody status was significantly associated with p53 expression in primary tumors and correlated with poor disease-free survival . This suggests that p53 antibody tests could be useful for predicting clinical outcomes in cancer patients.

Future Directions in p53 Antibody Research

As our understanding of p53 biology continues to evolve, so too will the applications and refinements of p53 antibodies, including TP53 (Ab-15).

Development of More Specific Antibodies

Future research may focus on developing antibodies with even greater specificity for different p53 isoforms and post-translationally modified forms. This would enable more precise analysis of p53 regulation in normal and disease states.

Therapeutic Applications

While current p53 antibodies like TP53 (Ab-15) are primarily research and diagnostic tools, future developments might explore their potential therapeutic applications. For example, antibodies that can restore the function of mutant p53 or enhance the activity of wild-type p53 could have significant implications for cancer treatment.

Product Specs

Form
Supplied at 1.0mg/mL in phosphate buffered saline (without Mg2+ and Ca2+), pH 7.4, 150mM NaCl, 0.02% sodium azide and 50% glycerol.
Lead Time
Typically, we can ship products within 1-3 business days after receiving your order. Delivery times may vary depending on the purchasing method or location. Please consult your local distributors for specific delivery timeframes.
Synonyms
Antigen NY-CO-13 antibody; BCC7 antibody; Cellular tumor antigen p53 antibody; FLJ92943 antibody; LFS1 antibody; Mutant tumor protein 53 antibody; p53 antibody; p53 tumor suppressor antibody; P53_HUMAN antibody; Phosphoprotein p53 antibody; Tp53 antibody; Transformation related protein 53 antibody; TRP53 antibody; tumor antigen p55 antibody; Tumor protein 53 antibody; Tumor protein p53 antibody; Tumor suppressor p53 antibody
Target Names
Uniprot No.

Target Background

Function
TP53 acts as a tumor suppressor in numerous cancer types. It induces either growth arrest or apoptosis depending on the cellular context and specific cell type. This protein is integral in cell cycle regulation, acting as a trans-activator that negatively regulates cell division by controlling a set of genes required for this process. One of the genes activated by TP53 is an inhibitor of cyclin-dependent kinases. Apoptosis induction appears to be mediated by stimulating BAX and FAS antigen expression or by repressing Bcl-2 expression. Its pro-apoptotic activity is activated through interaction with PPP1R13B/ASPP1 or TP53BP2/ASPP2. However, this activity is inhibited when the interaction with PPP1R13B/ASPP1 or TP53BP2/ASPP2 is displaced by PPP1R13L/iASPP. In collaboration with mitochondrial PPIF, TP53 participates in activating oxidative stress-induced necrosis, a function largely independent of transcription. It induces the transcription of long intergenic non-coding RNA p21 (lincRNA-p21) and lincRNA-Mkln1. LincRNA-p21 participates in TP53-dependent transcriptional repression leading to apoptosis and appears to have an effect on cell-cycle regulation. TP53 is implicated in Notch signaling cross-over. When associated with the CAK complex in response to DNA damage, TP53 prevents CDK7 kinase activity, thereby halting cell cycle progression. Isoform 2 enhances the transactivation activity of isoform 1 from some but not all TP53-inducible promoters. Isoform 4 suppresses transactivation activity and impairs growth suppression mediated by isoform 1. Isoform 7 inhibits isoform 1-mediated apoptosis. TP53 regulates the circadian clock by repressing CLOCK-ARNTL/BMAL1-mediated transcriptional activation of PER2.
Gene References Into Functions
  1. This study summarizes the diverse roles of p53 in adipocyte development and adipose tissue homeostasis. It further explores the manipulation of p53 levels in adipose tissue depots and its impact on systemic energy metabolism in the context of insulin resistance and obesity. [review] PMID: 30181511
  2. A USP15-dependent lysosomal pathway controls p53-R175H turnover in ovarian cancer cells. PMID: 29593334
  3. The findings suggest that the underlying mechanisms by which etoposide and ellipticine regulate CYP1A1 expression must be distinct and may not solely be linked to p53 activation. PMID: 29471073
  4. This study investigated the association of tumor protein p53 and drug metabolizing enzyme polymorphisms with clinical outcomes in patients with advanced non-small cell lung cancer. PMID: 28425245
  5. POH1 knockdown induced cell apoptosis through increased expression of p53 and Bim. PMID: 29573636
  6. This study identified a previously unappreciated effect of chronic high-fat diet on beta-cells, where persistent oxidative stress results in p53 activation and a resultant inhibition of mRNA translation. PMID: 28630491
  7. Diffuse large B cell lymphoma lacking CD19 or PAX5 expression were more likely to have mutant TP53. PMID: 28484276
  8. This research found that proliferation potential-related protein promotes esophageal cancer cell proliferation and migration, and suppresses apoptosis by mediating the expression of p53 and IL-17. PMID: 30223275
  9. HIV-1 infection and subsequent HIV-1 reverse transcription are inhibited in HCT116 p53(+/+) cells compared to HCT116 p53(-/-) cells. Tumor suppressor gene p53 expression is upregulated in non-cycling cells. The restrictions of HIV by p53 are associated with the suppression of ribonucleotide reductase R2 subunit expression and phosphorylation of SAMHD1 protein. PMID: 29587790
  10. Studies have shown that MDM2 and MDMX are targetable vulnerabilities within TP53-wild-type T-cell lymphomas. PMID: 29789628
  11. A significant increase in the expression of p53 and Bax was observed in cells treated with alpha-spinasterol, while cdk4/6 were significantly down-regulated upon exposure to alpha-spinasterol. PMID: 29143969
  12. A significant correlation was found between telomere dysfunction indices, p53, oxidative stress indices, and malignant stages of GI cancer patients. PMID: 29730783
  13. PGEA-AN modulates the P53 system, leading to the death of neuroblastoma cells without affecting the renal system in vivo. This makes it a promising candidate for the development of anticancer agents against neuroblastoma. PMID: 29644528
  14. These data suggest that activation of autophagy reduces the expression of STMN1 and p53. The resulting reduction in cancer cell migration and invasion contributes to the anti-cancer effects of Halofuginone. These findings could provide new insights into breast cancer prevention and therapy. PMID: 29231257
  15. miR-150 suppresses cigarette smoke-induced lung inflammation and airway epithelial cell apoptosis. This is causally linked to repression of p53 expression and NF-kappaB activity. PMID: 29205062
  16. Tumors harboring TP53 mutations, which can impair epithelial function, exhibit a unique bacterial consortium that is more abundant in smoking-associated tumors. PMID: 30143034
  17. Crosstalk among p53, lipid metabolism, insulin resistance, inflammation, and oxidative stress plays a role in Non-alcoholic fatty liver disease. [review] PMID: 30473026
  18. Ubiquitin-conjugating enzyme E2S (UBE2S) enhances the ubiquitination of p53 protein to facilitate its degradation in hepatocellular carcinoma (HCC) cells. PMID: 29928880
  19. p53 knockout compensates for osteopenia in murine Mysm1 deficiency. PMID: 29203593
  20. SIRT1 plays a critical protective role in the regulation of ADSCs aging and apoptosis induced by H2O2. PMID: 29803744
  21. 133p53 promotes tumor invasion via IL-6 by activating the JAK-STAT and RhoA-ROCK pathways. PMID: 29343721
  22. Mutant TP53 G245C and R273H can lead to more aggressive phenotypes and enhance cancer cell malignancy. PMID: 30126368
  23. PD-L1, Ki-67, and p53 staining individually had significant prognostic value for patients with stage II and III colorectal cancer. PMID: 28782638
  24. This study of patients with ccRCC, using pooled analysis and multivariable modeling, demonstrated that three recurrently mutated genes, BAP1, SETD2, and TP53, have statistically significant associations with poor clinical outcomes. Importantly, mutations of TP53 and SETD2 were associated with decreased CSS and RFS, respectively. PMID: 28753773
  25. The study revealed that the Wnt/beta-catenin signaling pathway and its major downstream target, c-Myc, increased miR552 levels. miR552 directly targets p53 tumor suppressor. miR552 may serve as an important link between functional loss of APC, leading to abnormal Wnt signals, and the absence of p53 protein in colorectal cancer. PMID: 30066856
  26. High levels of glucose lead to endothelial dysfunction via TAF1-mediated p53 Thr55 phosphorylation and subsequent GPX1 inactivation. PMID: 28673515
  27. While tumor protein p53 (p53) does not directly control luminal fate, its loss facilitates the acquisition of mammary stem cell (MaSC)-like properties by luminal cells. This predisposes them to developing mammary tumors with a loss of luminal identity. PMID: 28194015
  28. Fifty-two percent of patients diagnosed with glioma/glioblastoma exhibited a positive TP53 mutation. PMID: 29454261
  29. The expression of Ser216pCdc25C was also increased in the combined group, suggesting that irinotecan likely radiosensitized the p53-mutant HT29 and SW620 cells through the ATM/Chk/Cdc25C/Cdc2 pathway. PMID: 30085332
  30. In the former scenario, p53 binds to the CDH1 (encoding E-cadherin) locus to antagonize EZH2-mediated H3K27 trimethylation (H3K27me3) to maintain high levels of acetylation of H3K27 (H3K27ac). PMID: 29371630
  31. Among the hits, miR-596 was identified as a regulator of p53. Overexpression of miR-596 significantly increased p53 at the protein level, thereby inducing apoptosis. PMID: 28732184
  32. Apoptosis pathways are impaired in fibroblasts from patients with SSc, leading to chronic fibrosis. However, the PUMA/p53 pathway may not be involved in the dysfunction of apoptosis mechanisms in fibroblasts of patients with SSc. PMID: 28905491
  33. Low TP53 expression is associated with drug resistance in colorectal cancer. PMID: 30106452
  34. The activation of p38 in response to low doses of ultraviolet radiation was hypothesized to be protective for p53-inactive cells. Therefore, MCPIP1 may favor the survival of p53-defective HaCaT cells by sustaining the activation of p38. PMID: 29103983
  35. TP53 missense mutations are associated with castration-resistant prostate cancer. PMID: 29302046
  36. P53 degradation is mediated by COP1 in breast cancer. PMID: 29516369
  37. Combined inactivation of the XRCC4 non-homologous end-joining (NHEJ) DNA repair gene and p53 efficiently induces brain tumors with hallmark characteristics of human glioblastoma. PMID: 28094268
  38. This research establishes a direct link between Y14 and p53 expression and suggests a role for Y14 in DNA damage signaling. PMID: 28361991
  39. TP53 Mutation is associated with Mouth Neoplasms. PMID: 30049200
  40. Cryo-Electron Microscopy studies on p53-bound RNA Polymerase II (Pol II) reveal that p53 structurally regulates Pol II to affect its DNA binding and elongation, providing new insights into p53-mediated transcriptional regulation. PMID: 28795863
  41. Increased nuclear p53 phosphorylation and PGC-1alpha protein content immediately following SIE but not CE suggests these may represent important early molecular events in the exercise-induced response to exercise. PMID: 28281651
  42. The E6/E7-p53-POU2F1-CTHRC1 axis promotes cervical cancer cell invasion and metastasis. PMID: 28303973
  43. Accumulated mutant-p53 protein suppresses the expression of SLC7A11, a component of the cystine/glutamate antiporter, system xC(-), through binding to the master antioxidant transcription factor NRF2. PMID: 28348409
  44. The results demonstrate that LGASC of the breast is a low-grade triple-negative breast cancer that harbors a basal-like phenotype with no androgen receptor expression. It shows a high rate of PIK3CA mutations but no TP53 mutations. PMID: 29537649
  45. This study demonstrates an inhibitory effect of wild-type P53 gene transfer on graft coronary artery disease in a rat model. PMID: 29425775
  46. Our findings suggest that the TP53 c.215G>C, p. (Arg72Pro) polymorphism may be considered a genetic marker for predisposition to breast cancer in the Moroccan population. PMID: 29949804
  47. Higher levels of the p53 isoform, p53beta, predict a better prognosis in patients with renal cell carcinoma through enhancing apoptosis in tumors. PMID: 29346503
  48. TP53 mutations are associated with colorectal liver metastases. PMID: 29937183
  49. High expression of TP53 is associated with oral epithelial dysplasia and oral squamous cell carcinoma. PMID: 29893337

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Database Links

HGNC: 11998

OMIM: 133239

KEGG: hsa:7157

STRING: 9606.ENSP00000269305

UniGene: Hs.437460

Involvement In Disease
Esophageal cancer (ESCR); Li-Fraumeni syndrome (LFS); Squamous cell carcinoma of the head and neck (HNSCC); Lung cancer (LNCR); Papilloma of choroid plexus (CPP); Adrenocortical carcinoma (ADCC); Basal cell carcinoma 7 (BCC7)
Protein Families
P53 family
Subcellular Location
Cytoplasm. Nucleus. Nucleus, PML body. Endoplasmic reticulum. Mitochondrion matrix. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome.; [Isoform 1]: Nucleus. Cytoplasm. Note=Predominantly nuclear but localizes to the cytoplasm when expressed with isoform 4.; [Isoform 2]: Nucleus. Cytoplasm. Note=Localized mainly in the nucleus with minor staining in the cytoplasm.; [Isoform 3]: Nucleus. Cytoplasm. Note=Localized in the nucleus in most cells but found in the cytoplasm in some cells.; [Isoform 4]: Nucleus. Cytoplasm. Note=Predominantly nuclear but translocates to the cytoplasm following cell stress.; [Isoform 7]: Nucleus. Cytoplasm. Note=Localized mainly in the nucleus with minor staining in the cytoplasm.; [Isoform 8]: Nucleus. Cytoplasm. Note=Localized in both nucleus and cytoplasm in most cells. In some cells, forms foci in the nucleus that are different from nucleoli.; [Isoform 9]: Cytoplasm.
Tissue Specificity
Ubiquitous. Isoforms are expressed in a wide range of normal tissues but in a tissue-dependent manner. Isoform 2 is expressed in most normal tissues but is not detected in brain, lung, prostate, muscle, fetal brain, spinal cord and fetal liver. Isoform 3

Q&A

What are the recommended applications for TP53 (Ab-15) Antibody?

The TP53 (Ab-15) Antibody has been validated for multiple experimental techniques including Western blotting (WB), immunohistochemistry (IHC), immunofluorescence (IF), and enzyme-linked immunosorbent assay (ELISA) . For Western blot applications, the recommended dilution typically ranges from 1:500 to 1:1000, though optimal concentrations should be determined experimentally for each specific application . In immunohistochemistry, dilutions of 1:50 to 1:200 are commonly used to achieve optimal staining with minimal background . The antibody performs effectively in detecting p53 in both cell lysates and tissue sections, providing researchers flexibility in experimental design . Additionally, the antibody can be used in immunoprecipitation (IP) experiments at dilutions ranging from 1:50 to 1:200, allowing for isolation and enrichment of p53 protein from complex biological samples prior to analysis . When using this antibody for any application, it is advisable to include appropriate positive and negative controls to ensure specificity and validate experimental results .

How should TP53 (Ab-15) Antibody be stored and handled to maintain its activity?

For long-term preservation, TP53 (Ab-15) Antibody should be stored at -20°C in aliquots to minimize repeated freeze-thaw cycles that can degrade antibody quality and performance . The antibody is typically supplied in a storage buffer containing PBS with 50% glycerol, 0.5% BSA, and 0.02% sodium azide, which helps maintain stability during storage . For short-term use and frequent access, the antibody can be stored at 4°C for up to one month without significant loss of activity . When handling the antibody, it is important to note that it contains sodium azide, which is a hazardous substance that should be handled with appropriate precautions by trained personnel . Before use, allow the antibody to equilibrate to room temperature and gently mix by inverting the vial rather than vortexing, which can cause protein denaturation. Proper storage and handling practices are crucial for maintaining antibody specificity and sensitivity across experimental replicates over time . When preparing working dilutions, use fresh, sterile buffers and store any diluted antibody at 4°C for short periods only.

What are the cross-reactivity properties of TP53 (Ab-15) Antibody?

TP53 (Ab-15) Antibody demonstrates reactivity across multiple species including human, mouse, rat, and monkey, making it valuable for comparative studies across different model systems . The cross-reactivity is attributed to the high conservation of the epitope sequence (amino acids 13-17, P-L-S-Q-E) in the p53 protein across these species . Researchers should note that while the antibody detects total p53 protein regardless of its phosphorylation state, it does not cross-react with other members of the p53 family such as p63 or p73, due to sequence divergence in the epitope region . This specificity allows for confident detection of p53 without interference from related proteins in experimental systems. When working with less common species not listed in the product specifications, preliminary validation experiments are recommended to confirm reactivity before proceeding with full-scale studies . The consistent cross-reactivity profile across multiple species makes this antibody particularly useful for translational research where findings from animal models are compared with human samples.

How can TP53 (Ab-15) Antibody be used in conjunction with phospho-specific p53 antibodies in experimental designs?

StepAntibodyPurposeDilution RangeExpected Outcome
1TP53 (Ab-15)Detect total p53 levels1:500-1:1000 (WB)Establish baseline p53 expression
2Phospho-p53 (S15)Detect DNA damage-induced p53 activation1:500-1:1000 (WB)Measure proportion of activated p53
3Conformation-specific (e.g., PAb1620)Assess wild-type p53 conformation1:100-1:500 (WB)Determine functional status of p53
4p53 downstream target antibodies (e.g., p21, MDM2)Verify p53 transcriptional activity1:1000 (WB)Confirm functional consequences of p53 activation

What methodological considerations are important when using TP53 (Ab-15) Antibody for quantifying p53 levels in stress response studies?

When designing stress response studies using TP53 (Ab-15) Antibody, researchers should implement rigorous time-course experiments that capture both early and late phases of the p53 response, as p53 dynamics often follow oscillatory patterns after stress induction . Sample preparation is critical; cell lysis buffers should contain protease inhibitors to prevent p53 degradation during extraction, and phosphatase inhibitors are essential if subsequent analysis with phospho-specific antibodies is planned . For Western blot quantification, researchers should carefully optimize loading controls, as common housekeeping proteins like GAPDH can be affected by cellular stress conditions; consider using total protein normalization methods such as stain-free technology or REVERT total protein stains for more accurate quantification . When comparing p53 levels across different stress conditions (e.g., UV radiation, ionizing radiation, chemical agents), standardize the stress dose to achieve comparable biological effects rather than using identical physical or chemical doses . The following table outlines methodological considerations for different experimental techniques when quantifying p53 responses to stress:

TechniqueCritical ParametersPotential PitfallsRecommended Controls
Western BlotLoading amount, transfer efficiency, antibody dilutionNon-linear signal at high protein concentrationsTitration curve of recombinant p53, unstressed cells
ImmunofluorescenceFixation method, permeabilization conditionsAutofluorescence from stress agentsSecondary antibody-only controls, p53-null cells
Flow CytometryCell fixation, permeabilization, antibody concentrationCell aggregation affecting signal distributionIsotype controls, p53-deficient cell line
Chromatin IPCrosslinking time, sonication efficiencyInadequate chromatin fragmentationIgG control, non-p53 target regions

How can contradictory results between TP53 (Ab-15) Antibody and other p53 antibodies be interpreted and resolved?

When faced with discrepancies in results between TP53 (Ab-15) Antibody and other p53 antibodies, researchers should first consider the epitope locations of each antibody and how these might be affected by protein conformation, post-translational modifications, or protein-protein interactions in the experimental context . The N-terminal epitope recognized by TP53 (Ab-15) (amino acids 13-17) could potentially be masked in certain protein complexes, while other antibodies targeting different regions might still detect p53 in these complexes . A systematic approach to resolving contradictions involves running parallel validations using multiple detection methods such as Western blotting, immunoprecipitation followed by mass spectrometry, and immunofluorescence to triangulate the true p53 status . Researchers should also consider utilizing genetic approaches, such as siRNA knockdown or CRISPR-Cas9 gene editing of p53, to generate definitive negative controls that can help ascertain antibody specificity . In cases where differences persist, it is valuable to examine the experimental conditions that might affect epitope accessibility, such as denaturation methods in Western blotting, fixation protocols in immunohistochemistry, or buffer compositions that might influence protein conformation . The table below provides a troubleshooting framework for resolving contradictory results between different p53 antibodies:

ObservationPossible ExplanationsValidation ApproachesResolution Strategies
Signal with TP53 (Ab-15) but not with C-terminal antibodiesC-terminal modifications or truncationsWestern blot with multiple antibodies, mass spectrometryUse antibody panels targeting different regions
Signal with conformation-specific antibodies but weak with TP53 (Ab-15)Epitope masking in certain conformationsNative versus denaturing conditions, immunoprecipitationOptimize sample preparation to expose epitopes
Discrepancies between cytoplasmic and nuclear p53 detectionCompartment-specific post-translational modificationsSubcellular fractionation, co-IP with compartment markersUse complementary antibodies for different compartments
Inconsistent detection after stress inductionDynamic changes in p53 conformation or modificationsDetailed time-course experiments, nuclear/cytoplasmic extractionSelect antibodies appropriate for specific phases of p53 response

What are the optimal conditions for using TP53 (Ab-15) Antibody in Western blot applications?

For optimal Western blot performance with TP53 (Ab-15) Antibody, sample preparation should begin with efficient cell lysis using RIPA buffer containing freshly added protease inhibitors to prevent p53 degradation during extraction . Protein loading should be carefully optimized; for detecting endogenous p53 in unstressed cells, higher protein amounts (30-50 μg per lane) may be necessary due to typically low basal p53 levels, while stressed or transformed cells with elevated p53 may require less sample (10-20 μg) to prevent signal saturation . Transfer conditions should be optimized for proteins in the 50-55 kDa range, typically using wet transfer at 100V for 60-90 minutes or semi-dry transfer at 25V for 30 minutes with methanol-containing transfer buffer to efficiently move p53 to the membrane . For blocking, 5% non-fat dry milk in TBST is generally effective, though some researchers prefer 5% BSA when subsequent detection with phospho-specific antibodies is planned . The recommended dilution range for TP53 (Ab-15) in Western blot applications is 1:500 to 1:1000, but this should be empirically determined for each experimental system to achieve optimal signal-to-noise ratio . When developing the blot, enhanced chemiluminescence (ECL) detection systems provide good sensitivity for p53 detection, with exposure times adjusted based on p53 expression levels in the experimental samples.

What controls and validation steps should be incorporated when using TP53 (Ab-15) Antibody in new experimental systems?

When implementing TP53 (Ab-15) Antibody in a new experimental system, researchers should include a comprehensive set of controls beginning with positive controls such as cell lines known to express p53 (e.g., MCF-7 for wild-type p53 or HT-29 for mutant p53) and negative controls such as p53-null cell lines (e.g., H1299) to confirm antibody specificity . Validation should include peptide competition assays, where pre-incubation of the antibody with the immunizing peptide should abolish specific staining, providing evidence for epitope-specific binding . For genetic validation, researchers can employ siRNA or shRNA knockdown of p53, or use CRISPR-Cas9 engineered p53-knockout cell lines alongside parental cells to demonstrate signal specificity . When applying the antibody to tissue samples, include appropriate isotype controls matched to the antibody's host species and compare staining patterns with previously validated antibodies targeting different p53 epitopes . The table below outlines essential controls for validating TP53 (Ab-15) Antibody in various applications:

Control TypeWestern BlotImmunohistochemistryImmunofluorescenceFlow Cytometry
Positive ControlMCF-7 cells treated with doxorubicinKnown p53-positive tumor tissueUV-irradiated primary cellsEtoposide-treated lymphocytes
Negative Controlp53-null cells (H1299)p53-negative tissuep53-knockout cellsIsotype control antibody
Specificity ControlPeptide competitionAntigen retrieval optimizationPeptide blockingSecondary antibody only
Expression Controlp53 overexpression systemAdjacent normal tissueTransfected vs. untransfected cellsConcentration gradient of inducing agent
Loading/Technical Controlβ-actin or GAPDHEndogenous biotin blockingNuclear counterstainViability dye

How can TP53 (Ab-15) Antibody be optimized for immunohistochemistry and immunofluorescence applications?

For successful immunohistochemistry (IHC) with TP53 (Ab-15) Antibody, antigen retrieval is a critical step that should be optimized; heat-induced epitope retrieval using citrate buffer (pH 6.0) or EDTA buffer (pH 9.0) for 15-20 minutes typically provides good results for p53 detection in formalin-fixed, paraffin-embedded (FFPE) tissues . The antibody dilution for IHC applications generally ranges from 1:50 to 1:200, but should be determined empirically for each tissue type and fixation method to achieve optimal signal-to-background ratio . For immunofluorescence (IF) applications, fixation protocols significantly impact epitope accessibility; 4% paraformaldehyde for 15-20 minutes at room temperature often preserves p53 antigenicity while maintaining cellular morphology, but methanol fixation may be preferable for certain applications requiring better nuclear antigen exposure . Permeabilization conditions should be carefully optimized; 0.1-0.3% Triton X-100 for 5-10 minutes is commonly effective for nuclear proteins like p53, but excessive permeabilization can disrupt cellular architecture and increase background . The table below provides optimization guidelines for different sample types:

Sample TypeRecommended FixationAntigen Retrieval MethodAntibody Dilution RangeCounterstain Recommendations
FFPE Tissue Sections10% neutral buffered formalinCitrate buffer pH 6.0, 95°C for 20 min1:50-1:100Hematoxylin for IHC; DAPI for IF
Frozen Tissue Sections4% PFA for 10 minOften unnecessary; mild retrieval if needed1:100-1:200Nuclear Fast Red for IHC; Hoechst for IF
Cultured Cells on Coverslips4% PFA for 15 min or methanol for 10 min at -20°CNot typically required1:100-1:200DAPI or Hoechst
Cell Suspensions for Flow Cytometry1-2% PFA for 10 minMild detergent permeabilization (0.1% Triton X-100)1:50-1:100DNA dyes compatible with flow cytometry

What methodological approaches can enhance detection sensitivity when working with low p53 expression levels?

When working with samples containing low p53 expression levels, implementing signal amplification techniques can significantly enhance detection sensitivity with TP53 (Ab-15) Antibody . For Western blot applications, consider using high-sensitivity chemiluminescent substrates with extended exposure times, or switching to fluorescent secondary antibodies and detection systems that offer better quantitative linearity across a wider dynamic range . Sample enrichment through immunoprecipitation prior to Western blotting can concentrate p53 from larger sample volumes, improving detection of low-abundance p53 forms; use 1-2 mg of total protein lysate with 2-5 μg of TP53 (Ab-15) Antibody for effective pulldown . In immunohistochemistry and immunofluorescence applications, tyramide signal amplification (TSA) can enhance sensitivity by 10-100 fold compared to conventional detection methods, allowing visualization of low-abundance p53 in tissue sections or cells . For flow cytometry, consider using brighter fluorophores such as PE or APC rather than FITC, and implementing multi-layer detection systems (primary antibody → biotinylated secondary antibody → streptavidin-fluorophore) to amplify signal . The table below compares different signal enhancement approaches:

Enhancement TechniqueFold Increase in SensitivityApplicationAdvantagesLimitations
High-Sensitivity ECL Substrates5-20xWestern blotSimple implementationPotential background increase
Immunoprecipitation Enrichment10-50xWestern blotConcentrates target proteinRequires more starting material
Tyramide Signal Amplification10-100xIHC, IFSignificant sensitivity boostMore complex protocol
Biotinylated Secondary + Streptavidin3-10xFlow cytometry, IHC, IFVersatile across applicationsPotential endogenous biotin interference
Polymer Detection Systems5-15xIHCReduced backgroundHigher cost
Quantum Dots2-5xIF, Flow cytometryPhotostable, multiplexing capabilitySpecialized equipment needed

How can non-specific signals and background issues be addressed when using TP53 (Ab-15) Antibody?

When encountering non-specific signals or high background with TP53 (Ab-15) Antibody, several optimization strategies can be implemented based on the specific application . For Western blot applications, increasing the stringency of washing steps by using TBST with higher Tween-20 concentrations (0.1% to 0.3%) and extending wash durations to 10-15 minutes per wash can effectively reduce background; additionally, optimizing the blocking solution (comparing BSA versus milk, or increasing blocking agent concentration to 5-10%) can address non-specific binding issues . In immunohistochemistry, background issues often stem from endogenous peroxidase activity or biotin; implementing hydrogen peroxide treatment (3% H₂O₂ for 10 minutes) prior to antibody incubation and using avidin-biotin blocking kits for biotin-based detection systems can significantly reduce background . For immunofluorescence applications, autofluorescence can be minimized by treating samples with 0.1-1% sodium borohydride for 5-10 minutes before antibody incubation, or by using Sudan Black B (0.1-0.3% in 70% ethanol) post-staining to quench lipofuscin-related autofluorescence . Across all applications, diluting the antibody in the same buffer used for blocking rather than in PBS alone can reduce non-specific interactions, and including 0.1-0.5% non-ionic detergents such as Triton X-100 or NP-40 in antibody diluents can further enhance specificity .

What strategies can resolve ambiguous results when analyzing p53 in complex biological samples?

When faced with ambiguous results during p53 analysis in complex biological samples, implementing orthogonal detection approaches can provide clarity and confidence in data interpretation . Researchers should consider using multiple antibodies targeting different p53 epitopes to distinguish between specific and non-specific signals; combining TP53 (Ab-15) with antibodies recognizing the central domain (PAb240 or DO-1) and C-terminal region can create a more comprehensive detection profile . In challenging samples like tumor tissues with heterogeneous p53 expression or modifications, combining immunohistochemistry with laser capture microdissection followed by Western blotting or PCR-based analyses can correlate protein detection with genetic status . For distinguishing between wild-type and mutant p53 forms that may co-exist in samples, researchers can couple immunodetection with functional assays such as reporter assays measuring p53 transcriptional activity or chromatin immunoprecipitation to assess p53 binding to target gene promoters . The table below outlines a strategic approach to resolve ambiguous p53 detection results:

Analytical ChallengeOrthogonal ApproachImplementationExpected Outcome
Uncertain band identity in Western blotMass spectrometry validationIP with TP53 (Ab-15) followed by MS/MS analysisConfirmation of p53 identity and potential modifications
Distinguishing specific from non-specific tissue stainingRNA-scope or FISHIn situ hybridization for p53 mRNACorrelation between protein and mRNA localization
Heterogeneous p53 expression in tumorsDigital pathology with multiplex stainingCo-staining for p53 with proliferation/apoptosis markersAssociation of p53 with functional outcomes
Differentiating p53 isoformsIsoform-specific RT-PCRExtract RNA from parallel samples for targeted amplificationCorrelation between protein signals and isoform expression
Separating wild-type from mutant p53Next-generation sequencingTargeted sequencing of TP53 geneGenetic confirmation of mutation status

How should researchers interpret changes in p53 detection patterns following experimental treatments or genetic manipulations?

Observed ChangePotential Biological MeaningConfirmatory ExperimentsConsiderations for Interpretation
Increased total p53 signalStabilization due to stress response or mutationTime-course analysis, half-life measurement with cycloheximideDistinguish between increased synthesis and decreased degradation
Nuclear accumulationActivation for transcriptional functionsChIP-seq for p53 binding sites, RT-qPCR for target genesMay occur without changes in total protein levels
Appearance of slower-migrating bandsPost-translational modificationsPhospho-specific antibodies, λ-phosphatase treatmentConsider multiple modifications occurring simultaneously
Altered ratio of multiple bandsIsoform expression changes or proteolytic processingIsoform-specific antibodies, protease inhibitor studiesImportant for understanding p53 functional diversity
Loss of signal after treatmentDegradation, epitope masking, or technical issuesAlternative antibodies, mRNA analysisDistinguish between biological responses and technical artifacts

What considerations are important when comparing p53 data across different cell lines or tissue types using TP53 (Ab-15) Antibody?

When comparing p53 data across different biological systems using TP53 (Ab-15) Antibody, researchers must account for several variables that can significantly impact interpretation . First, consider the genetic background of each system, particularly the TP53 mutation status, as mutations can dramatically alter p53 stability, localization, and antibody epitope accessibility; sequencing the TP53 gene in each cell line or obtaining this information from databases like COSMIC or IARC TP53 Database is advisable before making comparisons . Second, evaluate baseline p53 regulatory network components across systems, as variations in MDM2, MDMX, or ARF expression can significantly influence basal p53 levels and stress responses even with identical TP53 genotypes . Third, account for tissue-specific factors that modify p53 function, such as differentiation state, proliferation rate, and microenvironmental conditions, all of which can affect p53 behavior independently of genetic differences . The table below outlines important considerations for cross-system comparisons:

Comparative ParameterImpact on p53 DetectionNormalization ApproachValidation Method
TP53 GenotypeMutant p53 typically shows higher baseline levelsStratify analysis by mutation statusSequence verification of TP53 status
Cell Cycle Synchronizationp53 levels fluctuate during cell cycleUse synchronized populations or cell cycle markersFlow cytometry for cell cycle distribution
Tissue of OriginTissue-specific p53 regulationCompare similar tissues or use tissue-specific markersInclude tissue-specific positive controls
Growth ConditionsStress factors in culture affect p53Standardize culture conditions before analysisMonitor stress markers (e.g., HSPs, ROS)
Protein Extraction MethodEfficiency varies across tissue typesSpike-in controls for extraction efficiencyCompare multiple extraction methods
Sample Processing Timep53 has short half-lifeStandardize time from collection to fixation/lysisTime-course analysis of sample stability

How can TP53 (Ab-15) Antibody be integrated into single-cell analysis techniques for studying p53 heterogeneity?

Integrating TP53 (Ab-15) Antibody into single-cell techniques offers powerful approaches for dissecting p53 heterogeneity within seemingly homogeneous populations, revealing insights into cellular decision-making and treatment responses . For single-cell immunofluorescence applications, researchers can combine TP53 (Ab-15) with cell cycle markers (e.g., EdU incorporation, PCNA) and downstream effector proteins (e.g., p21, cleaved caspase-3) to correlate p53 expression with functional outcomes at the individual cell level . In flow cytometry and mass cytometry (CyTOF) applications, TP53 (Ab-15) can be incorporated into multi-parameter panels after careful optimization of fixation, permeabilization, and staining conditions; for flow cytometry, conjugating the antibody to bright fluorophores like PE or APC is recommended, while for CyTOF, metal-conjugated antibodies provide superior multiplexing capabilities . When implementing these approaches, researchers should establish antibody specificity at the single-cell level using appropriate controls (including p53-null cells) and optimize signal-to-noise ratio through titration experiments . The table below outlines integration strategies for different single-cell techniques:

Single-Cell TechniqueImplementation StrategyCompatible Markers for MultiplexingAnalytical Considerations
Single-Cell ImmunofluorescenceTyramide signal amplification for sensitivityKi67, γH2AX, p21, phospho-p53 formsAutomated image analysis for quantification
Flow CytometryHarsh permeabilization (methanol) for nuclear antigensCell cycle dyes, apoptosis markers, phospho-proteinsCareful compensation for spectral overlap
Mass Cytometry (CyTOF)Metal-conjugated antibodies for high-dimensional analysis30+ markers including signaling and phenotypic proteinsUnsupervised clustering algorithms for data analysis
Imaging Mass CytometryMetal-conjugated antibodies on tissue sectionsTissue architecture markers, immune cell markersSpatial analysis of p53 in tissue context
Single-Cell Western BlotMiniaturized protein separation and blottingLimited by technique to 4-5 proteinsSize-based confirmation of target specificity

What are the considerations for using TP53 (Ab-15) Antibody in studying p53 dynamics in live cell imaging approaches?

While TP53 (Ab-15) Antibody is not directly applicable to live cell imaging due to its inability to penetrate intact cell membranes, researchers can implement complementary approaches that allow correlation between fixed-cell antibody detection and live-cell p53 dynamics . One strategy involves establishing parallel cultures where some samples are processed for live imaging using fluorescently-tagged p53 constructs (e.g., p53-GFP), while matching samples are fixed at defined time points for TP53 (Ab-15) Antibody staining; this allows validation that the tagged p53 behaves similarly to endogenous p53 as detected by the antibody . Another approach utilizes cell-permeable small molecule fluorescent probes that bind specifically to p53 for live imaging, followed by fixation and TP53 (Ab-15) Antibody staining to confirm specificity of the live signal . For studying rapid p53 dynamics, researchers can implement optogenetic p53 systems where p53 activity can be modulated by light, with subsequent fixation and antibody detection to confirm the effects on endogenous p53 status and downstream pathways . The table below compares approaches for correlating live imaging with antibody-based detection:

ApproachTechniqueAdvantagesLimitationsValidation with TP53 (Ab-15)
Parallel Live/Fixed AnalysisLive imaging of p53-FP followed by fixed timepointsCaptures dynamic behaviorPotential artifacts from p53 taggingFix parallel samples at key timepoints
Pulse-Chase DesignLive imaging followed by fixation of same cellsDirect correlation between live and fixed signalsChallenging to relocate exact fieldsTerminal analysis with antibody after live acquisition
Split-Pool BarcodingLive cell barcoding with fixed antibody detectionHigh-throughput single-cell analysisComplex implementationUse antibody in fixed endpoint analysis
Computational ModelingEstablish mathematical models based on fixed timepointsPredicts behavior between sampling pointsRequires validationUse antibody data at multiple timepoints to train models
Microfluidic ApproachesFixed-cell analysis at multiple timepointsControlled environment, reduced variabilitySpecialized equipment requiredSequential sampling from same population for antibody detection

How can TP53 (Ab-15) Antibody contribute to understanding p53 function in three-dimensional culture systems and organoids?

TP53 (Ab-15) Antibody can be effectively adapted for studying p53 biology in three-dimensional (3D) culture systems and organoids, providing insights into p53 function in more physiologically relevant contexts compared to traditional 2D cultures . For whole-mount immunofluorescence of 3D cultures, researchers need to implement optimized protocols with extended permeabilization (0.5% Triton X-100 for 30-60 minutes) and antibody incubation times (overnight at 4°C) to ensure complete penetration into the structures; antibody concentration may need to be increased to 1:50-1:100 compared to 2D applications . Alternatively, researchers can cryosection or paraffin-embed 3D cultures and organoids before proceeding with standard immunohistochemistry protocols, which allows for better antibody access but sacrifices the intact 3D architecture . For dynamic studies in organoids, researchers can establish p53 reporter systems (e.g., p53-responsive GFP expression) for live monitoring, followed by fixation and TP53 (Ab-15) Antibody staining at endpoints to correlate reporter activity with endogenous p53 status across different regions of the organoid . The table below provides methodological guidelines for different 3D culture applications:

3D System TypeRecommended ApproachProtocol ModificationsAnalytical Considerations
SpheroidsWhole-mount immunofluorescence for structures <200μmExtend permeabilization to 1 hour, antibody incubation overnightConfocal z-stacks with deconvolution
Large OrganoidsCryosectioning or paraffin embeddingStandard IHC protocols with optimized antigen retrievalSerial sections to reconstruct 3D distribution
Hydrogel-embedded CulturesIn situ fixation and stainingUse clearing techniques (CLARITY, CUBIC) for deep imagingLight sheet microscopy for intact visualization
Bioprinted 3D TissuesMultiplex immunofluorescenceIncrease antibody concentration and incubation timeSpatial analysis of p53 in relation to tissue architecture
Patient-Derived OrganoidsCompare with matched patient tissuesInclude phospho-p53 antibodies to assess activation statusCorrelate with patient treatment response data

What considerations are important when using TP53 (Ab-15) Antibody in conjunction with high-throughput screening approaches?

When integrating TP53 (Ab-15) Antibody into high-throughput screening workflows, researchers must adapt protocols to ensure reliability and reproducibility across large sample sets while maintaining sensitivity and specificity . For plate-based immunoassays, antibody performance should be validated across the dynamic range expected in the screen, with careful optimization of fixation, blocking, and antibody concentration to minimize well-to-well variability; typically, slightly higher antibody concentrations (1:100-1:500) than used in traditional Western blots may be necessary to ensure consistent detection across all samples . Automation-compatible protocols should be developed with simplified washing steps and robust detection systems, such as HRP-conjugated secondary antibodies with chemiluminescent substrates for plate reader detection or fluorescent secondary antibodies for high-content imaging . To ensure quality control across plates and batches, each plate should include internal standards (positive and negative controls) positioned strategically to detect and correct for positional effects and edge artifacts . The table below outlines considerations for different high-throughput applications:

Screening FormatImplementation StrategyQuality Control MeasuresData Analysis Considerations
96/384-well ImmunofluorescenceAutomated fixation and staining protocolsPositive/negative controls in each plateMachine learning for phenotypic classification
Reverse Phase Protein ArrayValidated antibody dilution seriesReference standards on each slideNormalization to total protein or housekeeping proteins
Tissue Microarray AnalysisAutomated IHC with standardized protocolsControl tissues with known p53 statusDigital pathology quantification algorithms
High-Content ImagingMultiplex with DNA damage and cell cycle markersZ'-factor calculation for assay robustnessMultiparametric analysis of p53 and phenotypic features
Cell-Based Reporter ScreensSecondary validation with antibody stainingGene editing controls (p53 knockout)Integration of multiple readouts for hit confirmation

Future directions in p53 antibody development and applications

The field of p53 research continues to evolve with emerging technologies enabling increasingly sophisticated analyses of p53 biology, with antibodies like TP53 (Ab-15) serving as foundational tools that will be complemented by next-generation approaches . Single-molecule detection methods, such as proximity ligation assays and super-resolution microscopy, are beginning to reveal previously undetectable p53 interactions and subcellular localizations, requiring even greater antibody specificity and sensitivity . The integration of spatial transcriptomics with highly multiplexed antibody-based imaging technologies (e.g., CODEX, 4i) promises to revolutionize our understanding of p53's tissue-specific functions by simultaneously visualizing p53 protein expression alongside its transcriptional outputs and interaction partners at single-cell resolution within intact tissues . Development of antibodies recognizing specific p53 conformational states beyond simple wild-type/mutant distinctions could provide deeper insights into the functional heterogeneity of p53 in different cellular contexts and disease states . As the repertoire of p53 isoforms and their roles in normal physiology and disease continues to expand, the development of isoform-specific antibodies will be crucial for dissecting their unique contributions . Looking forward, the combination of traditional antibody-based approaches with CRISPR-based genomic tagging strategies may provide the best of both worlds: enabling live visualization of endogenous p53 dynamics while allowing correlation with fixed-cell antibody-based detection of specific modifications and interactions.

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