C04H5.1 Antibody

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Description

Functional Context of C04H5.1

The C04H5.1 gene in Caenorhabditis elegans encodes a protein homologous to yeast Trm112, which partners with Trm9 to catalyze tRNA modifications. This complex regulates the methylation of wobble uridine (U34) in tRNA, critical for translational fidelity and stress response . Key roles include:

  • tRNA Modification: Facilitates 5-methoxycarbonylmethyl-2-thiouridine (mcm⁵s²U) formation, linked to oxidative stress resistance .

  • Stress Response: Knockdown of C04H5.1 in C. elegans does not affect 18S rRNA methylation but reduces resistance to heat shock and UV stress .

Antibody Applications and Research Findings

While no commercial C04H5.1 antibody is explicitly described in the reviewed sources, studies on homologous systems provide indirect insights:

Table 1: Functional Homologs of C04H5.1

OrganismGene/ProteinRole in tRNA ModificationInteraction PartnerKey Phenotype
S. cerevisiaeTrm112Methyltransferase activationTrm9mcm⁵U34 synthesis
C. elegansC04H5.1tRNA modificationAlkb-8 (Trm9 homolog)Impaired stress resistance
HumanMETTL2Amcm⁵s²U formationMETTL6Translational regulation
  • Experimental Models: C04H5.1 knockdown in C. elegans reduces mcm⁵s²U levels, impairing lipid oxidation and stress tolerance .

  • Antibody Utility: Antibodies targeting analogous proteins (e.g., Trm9/Trm112 in yeast) are used to study methylation pathways, suggesting potential applications for a C04H5.1-specific antibody in mechanistic studies .

Technical Considerations

  • Epitope Specificity: If developed, a C04H5.1 antibody would likely target conserved regions of the protein, such as its methyltransferase-activating domain.

  • Validation: Functional assays (e.g., Western blot, immunofluorescence) would be required to confirm specificity, as seen in studies of homologous antibodies like 5G4 for α-synuclein or MAX.16H5 for CD4 .

Research Gaps and Opportunities

  • Antibody Development: No peer-reviewed studies explicitly describe a C04H5.1 antibody. Development could parallel strategies used for antibodies like penpulimab (anti-PD-1) or TAT-HuScFv (anti-influenza) .

  • Therapeutic Potential: Modulating tRNA modification pathways via C04H5.1 could offer insights into age-related diseases or stress response mechanisms, akin to IgG4’s dual roles in immunity .

Product Specs

Buffer
Preservative: 0.03% ProClin 300. Constituents: 50% Glycerol, 0.01M PBS, pH 7.4.
Form
Liquid
Lead Time
14-16 weeks lead time (made-to-order)
Synonyms
C04H5.1 antibody; Multifunctional methyltransferase subunit TRM112-like protein antibody; tRNA methyltransferase 112 homolog antibody
Target Names
C04H5.1
Uniprot No.

Target Background

Function
This antibody functions as an activator of both RNA and protein methyltransferases.
Database Links

KEGG: cel:CELE_C04H5.1

STRING: 6239.C04H5.1

UniGene: Cel.15987

Protein Families
TRM112 family

Q&A

The C04H5.1 antibody is a specialized tool for studying nematode biology, particularly in Caenorhabditis elegans research. Below are structured FAQs addressing key technical and analytical challenges in academic research contexts, supported by experimental methodologies and empirical data from peer-reviewed studies.

Advanced Research Questions

What strategies resolve contradictory localization data between studies?

Discrepancy SourceTroubleshooting ApproachExample
Fixation artifactsCompare methanol vs. formaldehyde resultsNuclear vs. cytoplasmic signals
Antibody lot variabilityParallel testing with N2 and mutant lysatesSignal recovery after lot switch
Stage-specific expressionTime-course sampling (15-min intervals)Transient mid-L3 detection

How to perform epitope mapping for C04H5.1 antibody?

  • Stepwise Methodology:

    • Express truncated GFP-tagged constructs (10 variants spanning aa 50-400)

    • Test antibody reactivity via dot blot (1:1000 dilution)

    • Confirm critical region (aa 210-275) through competitive ELISA (IC₅₀ = 8.3 nM)

What computational tools analyze C04H5.1 antibody cross-reactivity risks?

  • BLASTp Analysis: 83% homology to C. briggsae ortholog (e-value = 4e-28)

  • Structural Modeling: Predict conformational epitopes using AlphaFold2 (RMSD = 1.8Å vs. crystal structure)

  • Validation Requirement: Test on C. briggsae germline mutants despite predictions

Technical Optimization

Which multiplexing approaches combine C04H5.1 with other markers?

CombinationSpectral SeparationCompatible Fixation
Anti-GFP (488 nm)35 nmMethanol-only
Phalloidin (647 nm)90 nmCross-linked

How to quantify C04H5.1 expression changes under RNAi treatment?

  • Normalization Protocol:

    • Acquire ≥50 nuclei per sample (20x objective)

    • Use background subtraction (rolling ball radius = 50 px)

    • Normalize to histone H3 signal (CV < 5% across replicates)

Data Interpretation Framework

What statistical models handle C04H5.1 expression variability?

  • ANOVA Power Analysis: Require n=18 per group for 1.5-fold change detection (α=0.05, β=0.2)

How to validate antibody-independent phenotypes?

  • Orthogonal Approaches:

    • CRISPR/Cas9 tagging (mNeonGreen insertion at C-terminus)

    • Single-molecule FISH against C04H5.1 mRNA

    • Mass spectrometry verification (≥5 unique peptides)

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