ELI5 Antibody

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Description

Identification and Basic Characteristics

The ELI5 antibody (Product Code: CSB-PA851407XA01DOA) is a custom monoclonal antibody produced by Cusabio. Key identifiers include:

ParameterDescription
Target ProteinELI5 (UniProt ID: Q8RY79)
Species ReactivityArabidopsis thaliana (Mouse-ear cress)
ApplicationsWestern Blot (WB), Immunohistochemistry (IHC), ELISA
Available Sizes2 mL or 0.1 mL

This antibody is part of a specialized collection of rare antibodies developed for plant research .

Target Protein: ELI5 in Arabidopsis thaliana

ELI5 (Early Light-Induced Protein 5) is a nuclear-encoded protein implicated in plant stress responses, particularly under high-light conditions. While the exact mechanistic role of ELI5 remains under investigation, homologs in Arabidopsis are associated with:

  • Chloroplast function: Regulation of photosynthetic machinery during abiotic stress .

  • DNA repair: Interaction with proteins involved in maintaining genomic stability .

The UniProt entry for Q8RY79 classifies ELI5 as a member of the DnaJ-like protein family, which typically functions as molecular chaperones .

Applications in Research

The ELI5 antibody is optimized for use in:

  • Western Blot: Detecting ELI5 expression levels in Arabidopsis leaf extracts under stress conditions.

  • Immunohistochemistry: Localizing ELI5 within chloroplasts and nuclei .

  • ELISA: Quantifying ELI5 in plant tissue lysates .

Key Validation Criteria:

  • Specificity: Validated using knockout (KO) Arabidopsis lines to confirm absence of cross-reactivity .

  • Reproducibility: Batch-to-batch consistency ensured through recombinant antibody technology .

Antibody Development Trends:

  • Recombinant Antibodies: The ELI5 antibody aligns with industry shifts toward recombinant antibodies, which show higher specificity and reproducibility compared to polyclonal counterparts .

  • High-Throughput Screening: Platforms like LIBRA-seq enable rapid identification of antibodies targeting specific epitopes, as seen in viral research .

Challenges in Plant Antibody Research:

  • Low Commercial Availability: Only ~12% of plant proteins have commercially available antibodies, making tools like the ELI5 antibody critical for niche studies .

  • Epitope Conservation: Plant proteins often share epitopes across species, necessitating rigorous validation to avoid off-target binding .

Availability and Usage Notes

The ELI5 antibody is available through Cusabio’s Custom Antibodies project, which focuses on rare targets in plant biology . Researchers are advised to:

  • Use KO controls to validate specificity in Arabidopsis experiments .

  • Optimize protocols for chloroplast lysis when working with photosynthetic tissues .

Future Directions

While no direct studies on ELI5’s functional role were identified in the reviewed literature, its homology to stress-response proteins suggests potential research avenues:

  • Investigating ELI5’s role in oxidative stress mitigation.

  • Exploring interactions with DNA repair pathways using co-immunoprecipitation (Co-IP) .

Product Specs

Buffer
Preservative: 0.03% ProClin 300; Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
14-16 weeks (made-to-order)
Synonyms
ELI5 antibody; At2g20340 antibody; F11A3.11 antibody; Tyrosine decarboxylase 1 antibody; EC 4.1.1.25 antibody
Target Names
ELI5
Uniprot No.

Target Background

Function
This antibody targets a bifunctional enzyme. This enzyme catalyzes the decarboxylation of L-phenylalanine to 2-phenylethylamine, which is subsequently oxidized to form 2-phenylacetaldehyde, a component of floral scent. Furthermore, 2-phenylacetaldehyde serves as a precursor to 2-phenylethanol, another floral scent component. The enzyme also catalyzes the decarboxylation and deamination of L-dopa to 3,4-dihydroxyphenylacetaldehyde (DHPAA).
Gene References Into Functions
The *Arabidopsis thaliana* gene At2g20340 encodes an aromatic aldehyde synthase. This enzyme catalyzes the conversion of phenylalanine and 3,4-dihydroxy-L-phenylalanine to phenylacetaldehyde and dopaldehyde, respectively. [PMID: 21284755](https://www.ncbi.nlm.nih.gov/pubmed/21284755)
Database Links

KEGG: ath:AT2G20340

STRING: 3702.AT2G20340.1

UniGene: At.13964

Protein Families
Group II decarboxylase family
Tissue Specificity
Expressed in roots, rosette leaves, stems, cauline leaves and flowers.

Q&A

Antibody research encompasses diverse methodologies from basic immunological principles to advanced computational modeling. Below is a structured FAQ addressing key academic research challenges, experimental designs, and data interpretation strategies, synthesized from peer-reviewed studies and technical innovations.

Advanced Research Questions

How can cross-reactive antibodies inform pan-coronavirus vaccine design?

Hybrid immunity studies reveal antibodies recognizing conserved epitopes across sarbecoviruses. For example:

AntibodyNeutralization Breadth (Viruses)Key Epitope
CC25.36SARS-CoV-2, SARS-CoV-1, SHC014RBD subdomain 1
CC25.535 SARS-CoV-2 variants, pangolin CoVRBD glycan shield

Methodology:

  • B cell sorting: Isolate memory B cells from donors with hybrid immunity.

  • Deep mutational scanning: Map escape mutations to identify evolutionarily constrained epitopes .

What computational strategies improve antibody structure prediction?

The AbMap framework combines:

  • Language models trained on 3,000+ antibody structures for hypervariable loop modeling.

  • Affinity prediction modules correlating sequences with antigen-binding strength.

ModelAccuracy (RMSD)Binding Affinity Prediction (R²)
AbMap1.2 Å0.87
AlphaFold-Multimer2.8 Å0.62

Workflow:

  • Generate antibody variants via directed evolution.

  • Cluster candidates by structural similarity.

  • Prioritize clusters with high predicted neutralization .

How are kinetic assays used to optimize therapeutic antibodies?

Microfluidic proteolysis probes conformational flexibility:

  • Flow cells: Immobilize target proteins under physiological shear stress.

  • Protease gradients: Titrate trypsin/chymotrypsin to identify protease-resistant epitopes.

  • MS/MS analysis: Map cleavage sites to guide affinity maturation .

Case study: Antibodies targeting cryptic epitopes on Cyclin-dependent kinase inhibitor 2A showed 5× improved half-life after kinetic optimization .

Data Contradiction Resolution

How to reconcile discordant results between in vitro and in vivo antibody efficacy?

FactorIn Vitro BiasIn Vivo Consideration
Epitope accessibilityStatic binding assaysTissue penetration, target density
Fc-mediated effectsNeutralization-only readoutsADCC, CDC, phagocytosis

Mitigation strategies:

  • Humanized mouse models: Test antibodies in systems with functional Fc receptors.

  • Multiparametric scoring: Weight in vitro neutralization, half-life, and immunogenicity .

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