ufc-1 Antibody

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Product Specs

Buffer
**Preservative:** 0.03% Proclin 300
**Constituents:** 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
ufc-1 antibody; C40H1.6Ubiquitin-fold modifier-conjugating enzyme 1 antibody; Ufm1-conjugating enzyme 1 antibody
Target Names
ufc-1
Uniprot No.

Target Background

Function
UFC-1 is an E2-like enzyme that forms an intermediate with UFM1. This intermediate is formed via a thioester linkage.
Database Links

KEGG: cel:CELE_C40H1.6

STRING: 6239.C40H1.6.1

UniGene: Cel.10720

Protein Families
Ubiquitin-conjugating enzyme family, UFC1 subfamily
Tissue Specificity
Expressed in the intestine.

Q&A

Basic Research Questions

What validation methods ensure UFC1 antibody specificity in experimental models?

  • Perform Western blotting using UFC1-knockout cell lysates as negative controls

  • Conduct peptide blocking assays with antigenic peptides to confirm binding specificity

  • Validate through immunoprecipitation-mass spectrometry to identify interacting partners

How to optimize UFC1 antibody protocols for diverse applications?

ApplicationKey ParametersValidation Example
Western Blot5% BSA blocking, 1:500 dilutionHuman HEK293T lysates
IHC-PAntigen retrieval (pH 6.0 citrate buffer)NSCLC patient tissues
IF0.1% Triton X-100 permeabilizationCervical cancer cell lines

What controls are essential when studying UFC1 in ufmylation pathways?

  • Include UBA5/UFL1 knockout models to confirm enzymatic cascade dependency

  • Use ATP-depleted systems to verify energy requirement for UFM1 conjugation

  • Validate with recombinant UFC1 protein in in vitro ufmylation assays

Advanced Research Challenges

How to resolve contradictory UFC1 localization data across studies?

ObservationPotential ResolutionSupporting Evidence
Nuclear vs. cytoplasmic stainingCheck cell cycle phase (G0/G1 arrest alters localization) Cervical cancer models
Variable ER associationMonitor ER stress conditionsReticulophagy studies
Discrepant molecular weightsTest for post-translational modificationsUbiquitination assays

What methods confirm UFC1's functional role in DNA damage response?

  • Combine siRNA knockdown with γH2AX foci quantification

  • Perform ChIP-seq to map UFC1-UFM1 interaction sites on histone H4

  • Use ATM kinase inhibitors to dissect signaling pathways

How to design cross-species UFC1 studies given antibody reactivity limitations?

SpeciesReactivity ConfirmationExperimental Validation
MouseEpitope alignment (87% homology)Embryonic fibroblast models
RatC-terminal sequence verificationPrimary neuron cultures
PrimatePhosphorylation site analysisHEK293T transfection

Methodological Considerations

What quantitative approaches suit UFC1 expression analysis in clinical samples?

  • Digital droplet PCR for serum exosome UFC1 detection (AUC = 0.794)

  • Multiplex immunohistochemistry with PTEN/ATM pathway markers

  • Mass spectrometry with heavy isotope-labeled UFM1 peptides

How to address non-specific binding in UFC1 protein interaction studies?

  • Implement crosslinker gradients (0.1-2% formaldehyde)

  • Use size-exclusion chromatography pre-IP to remove aggregates

  • Validate interactions via NMR chemical shift perturbation assays

Critical Data Interpretation

Why do UFC1 knockdown results vary across cancer models?

Cancer TypeObserved PhenotypeProposed Mechanism
NSCLCReduced proliferation (p<0.01)PTEN epigenetic regulation
CervicalG0/G1 arrest (p<0.05)FOXP3 interaction loss
LeukemiaNo apoptosis changeAlternative E3 ligase compensation

How to validate UFC1's role in ribosome quality control?

  • Perform ribosome profiling with harringtonine treatment

  • Conduct cryo-EM of 60S subunits from UFC1-deficient cells

  • Monitor UFM1-RPL26 conjugation via non-reducing PAGE

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