UNC5D Antibody, FITC conjugated

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Description

Introduction to UNC5D Antibody, FITC Conjugated

UNC5D Antibody, FITC conjugated is a fluorescently labeled polyclonal antibody targeting the UNC5D protein, a transmembrane receptor critical for netrin signaling in neural development, apoptosis, and cell migration. Fluorescein isothiocyanate (FITC) conjugation enables visualization of UNC5D localization via fluorescence microscopy, making this reagent indispensable for cellular imaging studies.

Antibody Profile

ParameterDetail
TargetUNC5D (Netrin receptor UNC5D, Protein unc-5 homolog D)
HostRabbit
ReactivityHuman, Mouse (varies by product)
ImmunogenSynthetic peptides (e.g., 90-212 AA, 482-511 AA)
Molecular Weight105.9 kDa (953 amino acids)
Post-Translational ModificationsGlycosylation, caspase-mediated cleavage

FITC Conjugation

  • FITC binds covalently to lysine residues, enabling fluorescence at 488 nm excitation.

  • Optimal labeling balances antibody activity and fluorescence intensity, typically achieved via DEAE Sephadex chromatography .

Primary Applications

TechniqueDilution RangeKey UsesSources
Western Blot (WB)1:300–5,000 Detection of UNC5D in lysates
ELISA1:500–1,000 Quantitative UNC5D measurement
Immunofluorescence (IF)1:50–500 Localization in fixed cells/tissues
IHC-P/IHC-F1:100–500 Tissue section analysis

Note: Dilutions vary by product; optimization is recommended .

Role in Neural Development

  • Axon Guidance: UNC5D mediates netrin-1-induced axon repulsion by interacting with DCC receptors .

  • Apoptosis Regulation: Acts as a dependence receptor, triggering apoptosis when unbound to netrin ligands .

Cancer Implications

  • Tumor Suppression: Downregulated in colorectal, breast, ovarian, and lung cancers; loss promotes tumorigenesis .

  • Metastasis: Inhibits anchorage-independent growth and invasion when functional .

Mechanistic Studies

Study FocusMethodFindingsSource
Cell MigrationIF (Cultured Cells)UNC5D localizes to cell membranes during migration .
Apoptosis InductionWestern BlotCaspase cleavage generates pro-apoptotic intracellular fragments .

FITC Conjugation Process

  1. Reaction: FITC reacts with ε-amino groups of lysine residues under alkaline conditions (pH 9.5) .

  2. Optimization: High protein concentration (25 mg/ml) and short reaction times (30–60 min) maximize labeling efficiency .

  3. Purification: Gradient DEAE Sephadex chromatography separates optimally labeled antibodies from unreacted FITC .

Quality Control

  • F/P Ratio: Ensures minimal nonspecific binding; typically 1:1 to 1:3 .

  • Stability: Stored at -20°C in PBS with sodium azide to prevent degradation .

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Typically, we can ship your order within 1-3 business days of receiving it. Delivery times may vary depending on your location and chosen shipping method. Please contact your local distributor for specific delivery timeframes.
Synonyms
UNC5D antibody; KIAA1777 antibody; UNC5H4 antibody; UNQ6012/PRO34692 antibody; Netrin receptor UNC5D antibody; Protein unc-5 homolog 4 antibody; Protein unc-5 homolog D antibody
Target Names
UNC5D
Uniprot No.

Target Background

Function
UNC5D is a receptor for the netrin NTN4, promoting neuronal cell survival. It plays a crucial role in cell-cell adhesion and cell guidance. As a receptor for netrin, UNC5D is involved in cell migration. It guides axonal growth cones during neuronal development by mediating repulsion upon ligand binding. In response to DNA damage, UNC5D might participate in apoptosis. Furthermore, it acts as a dependence receptor, inducing apoptosis when not associated with netrin ligand. UNC5D facilitates cell-cell adhesion by interacting with FLRT3 on neighboring cells.
Gene References Into Functions
  1. Research has identified a locus on chromosome 8 containing UNC5D, demonstrating its association with mental composite scores. Two independent single nucleotide polymorphisms within this locus exhibited a significant p-value of 4.38 x 10(-9) for mental composite scores. PMID: 28754176
  2. Unc5D has been identified as a novel transcriptional target of proapoptotic p53, potentially acting upstream of p53 to induce p53-dependent apoptosis through phosphorylation at Ser15. PMID: 24691657
  3. The dependence receptor UNC5H4 is a potential tumor suppressor in neuroblastoma. PMID: 24519068
  4. UNC5D functions as a tumor suppressor, frequently downregulated in renal cell carcinomas due to promoter hypermethylation and loss of heterozygosity (LOH). PMID: 23589179
  5. UNC5D forms a positive feedback loop with p53 and E2F1, promoting programmed cell death during neuroblastoma regression in response to nerve growth factor (NGF) dependence. PMID: 23778138
  6. UNC5H4 amplifies the p53-dependent apoptotic response. PMID: 18402767

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Database Links

HGNC: 18634

OMIM: 616466

KEGG: hsa:137970

STRING: 9606.ENSP00000385143

UniGene: Hs.238889

Protein Families
Unc-5 family
Subcellular Location
Cell membrane; Single-pass type I membrane protein.

Q&A

What is UNC5D and what biological functions does it serve?

UNC5D, also known as UNC5H4, is a netrin receptor belonging to the UNC5H family of proteins that act as transmembrane receptors for netrin-1 and play crucial roles in neural development. The protein functions as a receptor for netrin NTN4 that promotes neuronal cell survival and is involved in multiple neurological processes including axon guidance, cell migration, and cell-cell adhesion. UNC5D mediates axon repulsion of neuronal growth cones in the developing nervous system upon ligand binding and facilitates cell-cell adhesion via its interaction with FLRT3 on adjacent cells . Additionally, UNC5D serves as a dependence receptor that can induce apoptosis when not associated with its netrin ligand, suggesting a potential role in programmed cell death pathways .

What is the structural composition of UNC5D Antibody, FITC conjugated?

UNC5D Antibody, FITC conjugated is a fluorescein isothiocyanate-labeled polyclonal antibody developed in rabbits against specific epitopes of the human UNC5D protein. Typically, the antibody is generated using an immunogen consisting of recombinant Human Netrin receptor UNC5D protein (amino acids 90-212) . The antibody consists of immunoglobulin G (IgG) molecules conjugated with FITC fluorophores, allowing for fluorescent detection in various applications. The formulation generally includes preservatives such as 0.03% Proclin 300 and stabilizers like 50% glycerol in a 0.01M PBS buffer at pH 7.4 . This specific labeling enables direct visualization of UNC5D proteins in fluorescence-based detection methods without requiring secondary antibodies.

How does UNC5D function differ from other UNC5 family receptors?

UNC5D functions similarly to other UNC5 family members (UNC5A, UNC5B, UNC5C) as a netrin receptor, but exhibits distinct characteristics. While all UNC5 family proteins act as transmembrane receptors for netrin-1 and participate in axon guidance and neural cell migration, UNC5D has specific interactions with netrin NTN4 . UNC5D contains a death domain that, when cleaved by caspase, can produce an intracellular fragment capable of inducing apoptosis - a function that is inhibited by netrin binding . Unlike UNC5B (also known as UNC5H2 or p53RDL1), which has established links to p53-dependent pathways , UNC5D has a more specialized role in cell-cell adhesion through its interaction with FLRT3 . Additionally, UNC5D exists in two isoforms due to alternative splicing events , potentially contributing to functional diversity not observed in other family members.

What is the recommended methodology for immunofluorescence staining using UNC5D Antibody, FITC conjugated?

For optimal immunofluorescence staining using UNC5D Antibody, FITC conjugated, follow this methodological approach:

  • Sample Preparation: Fix cells or tissue sections using 4% paraformaldehyde for 15-20 minutes at room temperature. For tissue sections, perform antigen retrieval if necessary.

  • Permeabilization: Treat samples with 0.1-0.3% Triton X-100 in PBS for 5-10 minutes to allow antibody access to intracellular targets.

  • Blocking: Incubate samples with 5-10% normal serum (from a species different from the antibody host) in PBS with 0.1% Tween-20 for 1 hour at room temperature to minimize non-specific binding.

  • Primary Antibody Incubation: Dilute the UNC5D Antibody, FITC conjugated in blocking buffer at an optimized concentration (starting dilution 1:50-1:200 based on similar antibodies ). Incubate overnight at 4°C in a humidified chamber protected from light.

  • Washing: Wash samples thoroughly with PBS containing 0.1% Tween-20 (3-5 times, 5 minutes each).

  • Nuclear Counterstaining: Apply DAPI (1:1000 dilution) for 5-10 minutes to visualize nuclei.

  • Mounting: Mount samples using an anti-fade mounting medium.

  • Imaging: Visualize using a fluorescence microscope with appropriate filters for FITC (excitation ~495nm, emission ~520nm).

This protocol should be optimized for specific experimental conditions, including cell types, tissue characteristics, and target expression levels.

How does the performance of FITC-conjugated UNC5D antibody compare with non-conjugated variants in different applications?

For ELISA applications, both conjugated and non-conjugated antibodies demonstrate comparable specificity, though working dilutions differ (1:500-1:20000 for non-conjugated versus potentially different optimal dilutions for FITC-conjugated versions). In Western blotting, non-conjugated UNC5D antibodies have proven effective at dilutions of 1:500-1:2000 , while FITC-conjugated variants may require optimization if adapted for this application.

For immunohistochemistry and immunofluorescence applications, the directly-labeled FITC antibody provides immediate visualization capability, though with potentially less signal amplification than detection systems using enzyme-conjugated secondary antibodies or tyramide signal amplification methods.

What are the critical factors for specificity validation when using UNC5D Antibody, FITC conjugated?

Ensuring the specificity of UNC5D Antibody, FITC conjugated requires a multi-faceted validation approach:

  • Positive and Negative Controls: Include tissues or cell lines with known high expression of UNC5D (positive control) and those with minimal or no expression (negative control). Neural tissues are appropriate positive controls given UNC5D's role in neuronal development .

  • Blocking Peptide Competition: Perform parallel experiments where the antibody is pre-incubated with the immunizing peptide (amino acids 90-212 of human UNC5D ). Disappearance of signal in these conditions confirms specific binding.

  • Knockdown/Knockout Validation: Compare staining patterns in wild-type samples versus UNC5D knockdown or knockout models. Significant reduction in signal intensity in the latter validates antibody specificity.

  • Cross-reactivity Testing: Evaluate potential cross-reactivity with other UNC5 family members (UNC5A, UNC5B, UNC5C) through expression systems or tissues with differential expression patterns of these proteins.

  • Western Blot Correlation: Confirm that the molecular weight of detected bands (~106 kDa for UNC5D ) corresponds to the expected size of the target protein.

  • Multi-antibody Concordance: Compare staining patterns with alternative UNC5D antibodies targeting different epitopes to confirm consistent localization patterns.

  • Signal-to-noise Ratio Assessment: Optimize antibody concentration to maximize specific signal while minimizing background fluorescence, particularly important for FITC-conjugated antibodies which may exhibit some autofluorescence in certain tissues.

What is the optimal protocol for detecting UNC5D in tissues with varying expression levels?

For detecting UNC5D in tissues with varying expression levels, a tiered approach is recommended:

For High-expressing Tissues:

  • Use standard fixation with 4% paraformaldehyde for 15-20 minutes.

  • Perform minimal antigen retrieval (if necessary) using citrate buffer (pH 6.0) for 10 minutes.

  • Apply UNC5D Antibody, FITC conjugated at a higher dilution (1:200-1:500) to prevent signal saturation.

  • Use shorter incubation times (4-6 hours at room temperature or overnight at 4°C).

  • Image at lower exposure settings to avoid oversaturation.

For Medium-expressing Tissues:

  • Fix with 4% paraformaldehyde for 20 minutes.

  • Perform moderate antigen retrieval using citrate buffer (pH 6.0) for 15 minutes.

  • Apply antibody at moderate dilution (1:100-1:200).

  • Incubate overnight at 4°C.

  • Use standard exposure settings for imaging.

For Low-expressing Tissues:

  • Fix with 4% paraformaldehyde for 15 minutes (over-fixation can mask epitopes).

  • Perform extensive antigen retrieval using Tris-EDTA buffer (pH 9.0) for 20 minutes.

  • Apply antibody at lower dilution (1:50-1:100).

  • Extend incubation time to 36-48 hours at 4°C.

  • Consider signal amplification using anti-FITC antibodies conjugated to brighter fluorophores.

  • Use longer exposure times during imaging.

For all protocols, include appropriate positive control tissues with known UNC5D expression patterns and carefully optimize each step for the specific tissue type being examined.

How should researchers design experiments to study UNC5D's role in apoptosis versus axon guidance?

To effectively investigate UNC5D's dual roles in apoptosis and axon guidance, researchers should design parallel experimental approaches:

For Apoptosis Studies:

  • Cell Systems: Use neuronal cell lines or primary neurons with manipulated UNC5D expression (overexpression, knockdown, or knockout).

  • Apoptotic Triggers: Test conditions that induce apoptosis through UNC5D's dependence receptor function, such as:

    • Netrin deprivation in UNC5D-expressing cells

    • DNA damage induction (UNC5D may play a role in apoptosis in response to DNA damage )

  • Readouts:

    • Caspase-3/7 activity assays to measure apoptotic activation

    • TUNEL staining to identify DNA fragmentation

    • Annexin V/PI staining coupled with flow cytometry to quantify apoptotic cells

    • Western blot analysis of cleaved UNC5D to identify the intracellular fragment containing the death domain

  • Mechanistic Studies: Examine interactions between UNC5D and apoptotic machinery components using co-immunoprecipitation or proximity ligation assays.

For Axon Guidance Studies:

  • Experimental Systems: Use developing neuronal cultures, explants, or in vivo models with UNC5D manipulation.

  • Guidance Assays:

    • Growth cone turning assays with netrin gradients

    • Stripe assays with alternating netrin/control substrates

    • 3D co-cultures with netrin-secreting cells

  • Visualization:

    • Live imaging of neurons expressing UNC5D-GFP fusion proteins to track growth cone dynamics

    • Fixed-cell immunostaining using UNC5D Antibody, FITC conjugated to visualize receptor localization at growth cones

  • Quantification:

    • Measure neurite length, branching patterns, and directional bias

    • Analyze growth cone morphology and filopodial dynamics

    • Track migration trajectories of UNC5D-expressing cells

For Comparative Studies:

  • Design experiments where both functions can be observed simultaneously, such as:

    • Time-lapse imaging of neuronal cultures exposed to netrin gradients while monitoring both growth cone behavior and apoptotic events

    • In vivo studies examining both axon pathfinding defects and altered apoptosis patterns in UNC5D knockout or conditional knockout models

This dual approach allows researchers to determine how these functions are regulated and potentially interconnected in development and disease contexts.

How can UNC5D Antibody, FITC conjugated be utilized in multiplex immunostaining strategies?

Multiplex immunostaining with UNC5D Antibody, FITC conjugated requires strategic planning to achieve optimal results:

Compatible Fluorophore Combinations:
Design multiplex panels considering the spectral properties of FITC (excitation ~495nm, emission ~520nm) to minimize spectral overlap with other fluorophores. Recommended combinations include:

  • FITC (UNC5D) + DAPI (nuclei) + Cy5 (protein X)

  • FITC (UNC5D) + DAPI (nuclei) + Texas Red (protein Y) + Far Red (protein Z)

Sequential Staining Protocol:

  • Initial Blocking: Block with 10% normal serum (from species unrelated to any antibody hosts) containing 0.3% Triton X-100 for 1 hour.

  • First Primary Antibody: Apply UNC5D Antibody, FITC conjugated (1:100) overnight at 4°C.

  • Washing: Wash extensively with PBS containing 0.1% Tween-20 (5 times, 5 minutes each).

  • Second Primary Antibody: Apply unconjugated antibody against target protein Y overnight at 4°C.

  • Secondary Antibody: Apply appropriate species-specific secondary antibody conjugated with a compatible fluorophore (e.g., Texas Red).

  • Repeat Steps 3-5 for additional targets if required.

  • Nuclear Counterstain: Apply DAPI (1:1000) for 10 minutes.

  • Mounting: Mount with anti-fade medium containing components to minimize photobleaching.

Controls for Multiplex Validation:

  • Single-color controls to establish specific signal patterns

  • Fluorescence minus one (FMO) controls to assess potential spillover

  • Absorption controls where each primary antibody is sequentially omitted to ensure no cross-reactivity

Advanced Techniques:
For highly complex multiplex panels, consider tyramide signal amplification (TSA) for non-FITC channels to enhance detection sensitivity or spectral unmixing algorithms during image acquisition to separate overlapping fluorescence signals.

What strategies can be employed to investigate UNC5D interactions with netrin and other binding partners?

To comprehensively investigate UNC5D interactions with netrin and other binding partners, researchers should employ multiple complementary approaches:

Protein-Protein Interaction Techniques:

  • Co-immunoprecipitation (Co-IP): Use UNC5D antibodies to pull down protein complexes from cell lysates, followed by Western blotting for suspected binding partners like netrin NTN4 and FLRT3 .

  • Proximity Ligation Assay (PLA): Combine UNC5D Antibody, FITC conjugated with antibodies against potential binding partners (e.g., netrin-1, FLRT3) to visualize interactions as fluorescent spots when proteins are within 40nm of each other in situ.

  • Fluorescence Resonance Energy Transfer (FRET): Design experiments using UNC5D-CFP and partner protein-YFP fusion constructs to measure direct protein interactions based on energy transfer between fluorophores.

Binding Affinity and Kinetics:

  • Surface Plasmon Resonance (SPR): Measure real-time binding kinetics between purified UNC5D and potential partners immobilized on a sensor chip.

  • Biolayer Interferometry (BLI): Determine association and dissociation rates between UNC5D and binding partners like netrin NTN4.

Functional Interaction Assays:

  • Competition Assays: Test if soluble forms of potential binding partners can disrupt UNC5D-dependent phenotypes.

  • Domain Mapping: Generate UNC5D constructs with specific domain deletions to identify regions critical for particular protein interactions.

  • Cell-based Functional Assays: Measure effects of UNC5D-partner interactions on:

    • Apoptosis rates in the presence/absence of netrin

    • Cell adhesion strength when UNC5D interacts with FLRT3

    • Growth cone collapse in response to netrin gradients

Visualization of Interactions:

  • Bimolecular Fluorescence Complementation (BiFC): Split a fluorescent protein between UNC5D and potential partners to generate fluorescence only when proteins interact.

  • Live Cell Imaging: Use UNC5D Antibody, FITC conjugated in conjunction with other fluorescently-labeled binding partners in living cells to track dynamic interactions.

This multi-faceted approach provides complementary data on binding specificity, affinity, subcellular localization, and functional consequences of UNC5D interactions.

How can researchers effectively measure UNC5D's dual functions in tumor suppression and neural development?

To effectively measure UNC5D's dual functions in tumor suppression and neural development, researchers should implement parallel experimental approaches tailored to each biological context:

Tumor Suppression Assays:

  • Expression Correlation Analysis:

    • Compare UNC5D expression levels across normal tissues and matched tumor samples using RT-qPCR, Western blot, and immunohistochemistry with UNC5D antibodies

    • Create tissue microarrays from multiple cancer types implicated in UNC5D downregulation (colorectal, breast, ovary, uterus, stomach, lung, and kidney cancers)

  • Functional Cancer Hallmark Assays:

    • Anchorage-independent growth: Perform soft agar colony formation assays with UNC5D-overexpressing cancer cell lines versus controls

    • Invasion capacity: Conduct transwell matrix invasion assays comparing UNC5D-expressing and UNC5D-suppressed cells

    • Apoptotic sensitivity: Measure caspase activation and cell death rates in conditions of netrin deprivation

  • In vivo Tumor Models:

    • Xenograft studies comparing tumor growth kinetics of cancer cells with manipulated UNC5D expression

    • Orthotopic tumor models to assess metastatic capacity

  • Mechanistic Molecular Studies:

    • Map UNC5D-dependent apoptotic signaling pathways using phospho-protein arrays

    • Analyze UNC5D mutations in cancer databases to identify potential loss-of-function alterations

    • Investigate UNC5D promoter methylation status in tumors to determine epigenetic silencing mechanisms

Neural Development Assays:

  • Axon Guidance Measurements:

    • Ex vivo: Stripe assays and growth cone turning assays with explants from UNC5D wild-type, heterozygous, and knockout neural tissues

    • In vivo: Analyze commissural axon trajectories in developing neural systems with altered UNC5D expression

  • Cell Migration Tracking:

    • Time-lapse microscopy of fluorescently labeled neural cells with manipulated UNC5D expression

    • Quantitative analysis of migration paths, velocities, and directional persistence

  • Neural Circuit Formation:

    • DiI tracing of specific neural pathways in UNC5D mutant versus control animals

    • Electrophysiological recordings to assess functional connectivity in neural circuits dependent on UNC5D

  • Synaptogenesis Analysis:

    • Quantify synapse density and morphology in neurons with altered UNC5D expression

    • Evaluate synaptic protein localization using immuno-electron microscopy

Integrated Approaches:

  • Conditional Knockout Models: Generate tissue-specific and temporally controlled UNC5D knockout models to separate neural versus tumor-related phenotypes

  • Multi-parameter Analysis: Develop computational frameworks to correlate UNC5D expression data across developmental stages and cancer progression

  • Patient-derived Models: Establish organoids from normal neural tissues and matched tumors to study UNC5D function in near-physiological contexts

This comprehensive approach enables researchers to distinguish between UNC5D's context-dependent functions while identifying potential mechanistic overlaps between its developmental and tumor-suppressive roles.

What are common technical challenges when working with UNC5D Antibody, FITC conjugated and how can they be overcome?

Researchers working with UNC5D Antibody, FITC conjugated may encounter several technical challenges. Here are the most common issues and evidence-based solutions:

Challenge 1: High Background Fluorescence

  • Causes: Insufficient blocking, non-specific binding, excess antibody concentration, or FITC autofluorescence

  • Solutions:

    • Increase blocking duration to 2 hours using 5-10% serum with 1% BSA

    • Optimize antibody dilution through a titration series (1:50, 1:100, 1:200, 1:400)

    • Add 0.1-0.3% Triton X-100 to reduce non-specific membrane binding

    • Include an additional washing step with high-salt PBS (500mM NaCl) to reduce ionic interactions

    • Consider photobleaching tissue autofluorescence with prolonged exposure to illumination before imaging

Challenge 2: Weak or Absent Signal

  • Causes: Over-fixation masking epitopes, insufficient permeabilization, low UNC5D expression, or FITC photobleaching

  • Solutions:

    • Optimize fixation time (test 10, 15, and 20 minutes with 4% paraformaldehyde)

    • Test multiple antigen retrieval methods (citrate buffer pH 6.0, Tris-EDTA pH 9.0, enzymatic retrieval)

    • Use lower antibody dilution (1:50) and extend incubation time to 48 hours at 4°C

    • Protect samples from light throughout the protocol to prevent FITC photobleaching

    • Consider signal amplification with anti-FITC antibodies conjugated to higher quantum yield fluorophores

Challenge 3: Non-specific Binding or Cross-reactivity

  • Causes: Antibody cross-reactivity with other UNC5 family members

  • Solutions:

    • Validate specificity using UNC5D knockout/knockdown controls

    • Perform pre-absorption controls with recombinant UNC5D protein

    • Use tissues known to express other UNC5 family members but not UNC5D as negative controls

    • Compare staining patterns with other validated UNC5D antibodies targeting different epitopes

Challenge 4: Inconsistent Results Between Experiments

  • Causes: Variability in tissue preparation, antibody stability, or fluorophore degradation

  • Solutions:

    • Standardize all protocol steps with precise timing, temperature control, and reagent storage

    • Prepare larger volumes of working antibody dilution and aliquot for consistent use across experiments

    • Include internal control samples in each experiment for normalization

    • Store antibody protected from light at 4°C for short-term or at -20°C with 50% glycerol for long-term stability

    • Document lot-to-lot antibody variation and maintain detailed experimental records

These solutions are based on experience with similar antibodies and should be systematically tested to determine optimal conditions for each specific experimental system.

How should researchers interpret contradictory results between UNC5D protein expression and mRNA levels?

Researchers encountering discrepancies between UNC5D protein expression (detected by UNC5D Antibody, FITC conjugated) and mRNA levels should consider a structured analytical approach:

Potential Mechanisms of Discrepancy:

  • Post-transcriptional Regulation:

    • UNC5D may undergo microRNA-mediated silencing affecting translation efficiency

    • Alternative splicing could generate protein isoforms not detected by the antibody (UNC5D exists in two isoforms)

    • RNA-binding proteins might regulate UNC5D mRNA stability or translation rate

  • Post-translational Regulation:

    • UNC5D protein undergoes caspase-mediated cleavage in certain contexts , potentially affecting detection

    • Protein degradation rates may vary between tissues and experimental conditions

    • Receptor internalization and recycling dynamics could affect cell surface detection

  • Technical Considerations:

    • Epitope masking by protein interactions or conformational changes

    • Antibody specificity limitations

    • Sensitivity differences between protein and mRNA detection methods

Systematic Validation Approach:

  • Temporal Analysis:

    • Perform time-course studies measuring both UNC5D mRNA and protein levels to identify potential time lags between transcription and translation

    • Test if protein expression follows mRNA expression with a consistent delay

  • Multi-method Confirmation:

    • Validate mRNA expression using both RT-qPCR and RNA-seq

    • Confirm protein expression using multiple detection methods:

      • Western blotting with different UNC5D antibodies

      • Mass spectrometry-based proteomics

      • Flow cytometry for cell surface expression

  • Functional Pathway Analysis:

    • Examine expression of proteins known to regulate UNC5D at post-transcriptional or post-translational levels

    • Test if manipulating these regulatory factors restores correlation between mRNA and protein levels

  • Subcellular Localization Studies:

    • Determine if UNC5D protein is sequestered in specific cellular compartments using subcellular fractionation

    • Perform immunofluorescence microscopy to visualize UNC5D distribution patterns

Interpretive Framework:

ScenarioUNC5D mRNAUNC5D ProteinPossible Interpretation
1HighLowPost-transcriptional silencing, rapid protein degradation, or epitope masking
2LowHighEnhanced translation efficiency, increased protein stability, or detection of residual protein after transcriptional downregulation
3Tissue-specific discrepanciesTissue-specific discrepanciesDifferential regulatory mechanisms across tissue types
4Temporal discordanceTemporal discordanceTime lag between transcription and stable protein expression

This systematic approach not only resolves contradictory findings but potentially reveals important regulatory mechanisms governing UNC5D expression in different biological contexts.

What are the best practices for quantitative analysis of UNC5D expression using FITC-conjugated antibodies?

For robust quantitative analysis of UNC5D expression using FITC-conjugated antibodies, researchers should follow these evidence-based best practices:

Sample Preparation Standardization:

  • Use consistent fixation protocols (duration, reagent concentration, temperature)

  • Process all experimental and control samples in parallel

  • Standardize antigen retrieval conditions for each tissue/cell type

  • Prepare uniform tissue sections (identical thickness, similar anatomical regions)

Staining Protocol Optimization:

  • Determine optimal UNC5D Antibody, FITC conjugated concentration through titration experiments

  • Use identical antibody lots across experiments when possible

  • Include calibration standards with known UNC5D expression levels

  • Implement automated staining platforms when available to reduce operator variability

Image Acquisition Guidelines:

  • Microscope Settings:

    • Use identical acquisition parameters for all samples (exposure time, gain, offset)

    • Avoid pixel saturation by checking histogram distributions

    • Calibrate for flat-field illumination to correct for spatial lighting variations

    • Acquire Z-stacks for accurate representation of 3D structures

  • Controls and Calibration:

    • Include fluorescence calibration beads in each imaging session

    • Image negative controls to establish background thresholds

    • Use positive controls with validated UNC5D expression

    • Incorporate internal reference markers for normalization

Quantitative Analysis Methods:

Statistical Analysis and Validation:

  • Determine appropriate sample sizes through power analysis

  • Test for normal distribution of data before selecting parametric vs. non-parametric tests

  • Use paired analyses when comparing treated vs. untreated samples

  • Implement appropriate multiple testing corrections for large datasets

  • Validate findings with orthogonal methods (e.g., flow cytometry, Western blot)

Reporting Standards:

  • Document all acquisition parameters in publications

  • Include representative images alongside quantitative data

  • Report variability measures (standard deviation, confidence intervals)

  • Make raw data and analysis scripts available when possible

By adhering to these best practices, researchers can ensure reproducible and reliable quantitative analysis of UNC5D expression patterns across experimental conditions and biological systems.

How does current understanding of UNC5D functionality impact research directions in neuroscience and cancer biology?

The current understanding of UNC5D functionality creates a unique intersection between neuroscience and cancer biology, driving several emerging research directions. UNC5D's dual role as both a netrin receptor facilitating axon guidance and neural development, and as a dependence receptor with tumor suppressor properties, positions it as a molecule of significant interest in both fields . In neuroscience, UNC5D's involvement in axon repulsion, cell migration, and cell-cell adhesion highlights its importance in neural circuit formation and potentially in neurodevelopmental disorders . The receptor's interaction with netrin NTN4 and FLRT3 suggests complex signaling networks that may influence synaptogenesis and neural plasticity .

In cancer biology, the downregulation of UNC5D, along with other UNC5H receptors, in multiple carcinomas (colorectal, breast, ovary, uterus, stomach, lung, and kidney) suggests a tumor-suppressive function . UNC5D's dependence receptor properties—inducing apoptosis when not bound to netrin ligands—provide a mechanistic explanation for this tumor suppression . The potential role of UNC5D in DNA damage-induced apoptosis further connects it to cancer resistance mechanisms .

Moving forward, researchers are increasingly focused on exploring the regulatory mechanisms controlling UNC5D expression in both neural development and tumorigenesis, potentially identifying shared pathways that could be therapeutically targeted. Understanding how UNC5D balances survival and apoptotic signaling in different cellular contexts may reveal novel approaches for promoting neural regeneration or inducing selective cancer cell death.

What methodological advances are needed to better study UNC5D interactions and signaling pathways?

Despite significant progress in understanding UNC5D biology, several methodological advances are necessary to comprehensively study its interactions and signaling pathways:

  • Improved Spatiotemporal Resolution Techniques: Development of advanced live imaging methods with higher temporal resolution to capture the dynamic nature of UNC5D-netrin interactions at growth cones and cell membranes. Super-resolution microscopy approaches adapted for long-term live imaging would enable visualization of UNC5D clustering and redistribution during axon guidance and apoptotic signaling.

  • Multifunctional Biosensors: Creation of genetically encoded biosensors that can simultaneously report UNC5D conformational changes and downstream signaling events. FRET-based or split fluorescent protein-based sensors could reveal how netrin binding alters UNC5D's ability to interact with intracellular signaling components.

  • Single-Cell Multi-omics Integration: Advancement of technologies that combine transcriptomics, proteomics, and metabolomics at the single-cell level to understand the complete signaling cascade downstream of UNC5D in different cell types and conditions.

  • In situ Protein Interaction Detection: Enhancement of methods like proximity ligation assays with multiplexing capabilities to simultaneously visualize interactions between UNC5D and multiple binding partners in intact tissues.

  • Organ-on-Chip Technologies: Development of microfluidic systems that recreate the complex cellular environments where UNC5D functions, allowing for controlled manipulation of ligand gradients and real-time monitoring of cellular responses.

  • Selective Conformational Antibodies: Generation of antibodies that specifically recognize active versus inactive UNC5D conformations to better understand receptor activation states in various biological contexts.

  • CRISPR-based Temporal Control Systems: Refinement of gene editing technologies to allow precise temporal control of UNC5D expression or mutation introduction at specific developmental stages to distinguish between its developmental and homeostatic functions.

These methodological advances would significantly enhance our ability to understand the complex biology of UNC5D and potentially reveal new therapeutic opportunities targeting its signaling pathways in neurological disorders and cancer.

What are the potential future applications of UNC5D Antibody, FITC conjugated in translational research?

The UNC5D Antibody, FITC conjugated has significant potential for translational research applications spanning diagnostics, therapeutics development, and personalized medicine approaches:

Diagnostic Applications:

  • Cancer Prognostic Marker: Development of immunohistochemistry-based diagnostic assays to assess UNC5D expression in tumor biopsies, potentially serving as a prognostic biomarker given UNC5D's downregulation in multiple carcinomas .

  • Neurodevelopmental Disorder Screening: Creation of diagnostic tools to detect abnormal UNC5D expression patterns in neural tissues, which may correlate with specific neurodevelopmental disorders given UNC5D's critical role in axon guidance and neural migration .

  • Liquid Biopsy Development: Exploration of circulating tumor cell (CTC) detection methods incorporating UNC5D antibodies to identify cancer cells with altered dependence receptor signaling.

Therapeutic Development Support:

  • Drug Discovery Screening: Implementation in high-content screening assays to identify compounds that modulate UNC5D expression or function, potentially restoring normal levels in cancer cells or enhancing neural regeneration.

  • Therapeutic Response Monitoring: Utilization in assays measuring changes in UNC5D expression as a biomarker for response to therapies targeting netrin signaling pathways.

  • Gene Therapy Validation: Application in monitoring the success of gene therapy approaches aimed at restoring UNC5D expression in tumors where it is downregulated.

Emerging Clinical Research Applications:

  • Neural Regeneration Studies: Investigation of UNC5D expression and localization patterns in neural injury and regeneration models to develop targeted therapies promoting axonal regrowth.

  • Cancer Immunotherapy Enhancement: Exploration of UNC5D's role in tumor microenvironment and immune cell interactions, potentially revealing new immunotherapy targets.

  • Personalized Medicine Approaches: Development of companion diagnostic assays to stratify patients based on UNC5D expression patterns for targeted therapies affecting dependence receptor pathways.

  • Brain Organoid Models: Implementation in advanced 3D neural organoid systems to study UNC5D's role in human neurodevelopment and neurological disorders with greater translational relevance.

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