CTO1 Antibody

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Description

Potential Terminology Clarification

The term "CTO1" does not correspond to any characterized antibody, protein, or biomarker in the provided sources. Possible scenarios include:

  • Typographical Errors: "CTO1" may be a misspelling of established antibodies such as TOC1 (Tau Oligomeric Complex 1) or CT-1 (Cardiotrophin-1).

  • Unconventional Nomenclature: If "CTO1" represents a novel or niche target, it may not yet be indexed in public databases or widely studied.

TOC1 Antibody (Tau Oligomeric Complex 1)2

  • Function: Targets tau oligomers implicated in Alzheimer’s disease and other tauopathies.

  • Epitope: Binds residues 209–224 of tau, revealed during dimerization/oligomerization.

  • Applications: Detects early-stage tau aggregates in brain tissue (e.g., pretangles in Alzheimer’s).

CT-1 Antibody (Cardiotrophin-1)3

  • Function: Neutralizes CT-1, a cytokine involved in cardiac and neuronal cell survival.

  • Applications: Used in cell proliferation assays (e.g., TF-1 erythroleukemic cell line).

TRBC1 Antibody (T-Cell Receptor Beta Constant 1)47

  • Function: Identifies clonal T-cell populations in malignancies.

  • Applications: Flow cytometry for diagnosing T-cell neoplasms.

Recommendations for Further Investigation

  1. Verify Target Specificity: Confirm the intended antigen or protein target for "CTO1".

  2. Explore Synonyms: Cross-reference databases (e.g., UniProt, PubMed) using alternative spellings or related terms.

  3. Consult Commercial Catalogs: Repositories like R&D Systems ( ) or Biocompare ( ) list antibodies against 19,000+ targets but show no "CTO1" entries.

Data Table: Antibodies with Similar Nomenclature

Antibody NameTarget ProteinKey ApplicationSource
TOC1Tau oligomers (aa 209–224)Neurodegenerative disease researchPMC4791958
CT-1Cardiotrophin-1Cell proliferation neutralizationR&D Systems
TRBC1T-cell receptor beta chainT-cell clonality assaysPubMed30972977
CTRP1Complement C1q tumor necrosis factor-related protein 1Western blot, IHCBio-Techne

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
CTO1 antibody; YCR015C antibody; YCR15CCold tolerance protein 1 antibody
Target Names
CTO1
Uniprot No.

Target Background

Function
CTO1 Antibody is a protein essential for cold tolerance. It plays a crucial role in regulating phosphate uptake.
Database Links

KEGG: sce:YCR015C

STRING: 4932.YCR015C

Protein Families
UPF0655 family

Q&A

What is Cardiotrophin-1 and what role do CT-1 antibodies play in research?

Cardiotrophin-1 (CT-1) is a member of the interleukin-6 (IL-6) cytokine family, which includes IL-6, IL-11, leukemia inhibitory factor (LIF), oncostatin M (OSM), and ciliary neurotrophic factor (CNTF). It was initially identified based on its ability to induce cardiac myocyte hypertrophy in vitro . CT-1 functions as a pleiotropic cytokine with overlapping activities with other IL-6 family members across various cell types .

CT-1 antibodies are essential research tools that enable:

  • Detection and quantification of CT-1 protein in biological samples

  • Investigation of CT-1-mediated signaling pathways

  • Examination of CT-1's role in cardiac hypertrophy and other physiological processes

  • Study of interactions between CT-1 and its receptor complex

The human CT-1 protein consists of 201 amino acid residues and lacks a hydrophobic signal peptide, making its release mechanism from cells currently not fully understood . CT-1 antibodies targeting different epitopes of this protein provide researchers with tools to investigate its expression, localization, and function.

What are the key differences between monoclonal and polyclonal CT-1 antibodies?

While the search results don't specifically compare monoclonal and polyclonal CT-1 antibodies, understanding their general differences is crucial for experimental design:

CharacteristicMonoclonal CT-1 AntibodiesPolyclonal CT-1 Antibodies
OriginSingle B-cell cloneMultiple B-cell populations
Epitope recognitionSingle epitopeMultiple epitopes
Batch-to-batch consistencyHighVariable
Cross-reactivityGenerally lowerGenerally higher
Signal amplificationLowerHigher
Best suited forApplications requiring high specificityApplications requiring signal amplification

Monoclonal antibodies like the Mouse Anti-Human Cardiotrophin-1/CT-1 Monoclonal Antibody (Clone # 89230) offer high specificity for defined epitopes, making them ideal for applications requiring precise target recognition . Their consistent production ensures experimental reproducibility. In contrast, polyclonal antibodies recognize multiple epitopes on the CT-1 protein, potentially providing stronger signals but with increased risk of cross-reactivity.

What are the optimal storage and reconstitution conditions for CT-1 antibodies?

Proper storage and handling are critical for maintaining CT-1 antibody functionality:

  • Storage temperature: Use a manual defrost freezer and avoid repeated freeze-thaw cycles

  • Shelf life parameters:

    • 12 months from receipt date at -20 to -70°C (as supplied)

    • 1 month at 2 to 8°C under sterile conditions after reconstitution

    • 6 months at -20 to -70°C under sterile conditions after reconstitution

While specific buffer compositions may vary between manufacturers, antibodies are typically stored in buffers containing stabilizers and preservatives. Reconstitution should follow manufacturer guidelines precisely, with attention to sterile technique to prevent contamination.

The reconstitution volume should be carefully calculated based on the antibody concentration needed for specific applications, with aliquoting recommended to minimize freeze-thaw cycles that can degrade antibody performance .

How can antibodies be used in T-cell receptor clonality detection?

Recent research has demonstrated that antibodies targeting T-cell receptor β-chain constant regions (TRBC) can facilitate rapid identification of T-cell neoplasms based on TRBC-restriction:

An innovative approach uses a single anti-TRBC1 antibody incorporated into diagnostic T-cell flow cytometry panels to detect T-cell clonality with high sensitivity and specificity . This method takes advantage of the fact that normal T-cells express either TRBC1 or TRBC2 (but not both) in approximately equal proportions, while clonal T-cell populations express only one type.

Methodological approach:

  • Nine-color flow cytometry panels were developed including TRBC1 (CD2/CD3/CD4/CD5/CD7/CD8/CD45/TCRγδ/TRBC1 and/or CD2/CD3/CD4/CD5/CD7/CD8/CD26/CD45/TRBC1)

  • Monophasic TRBC1 expression on any immunophenotypically distinct CD4-positive or CD8-positive/TCRγδ-negative T-cell subset was considered indicative of clonality

  • Analysis of 20 patients with mature T-cell neoplasms and 44 patients without evidence of T-cell neoplasia

Results demonstrated 100% sensitivity for detecting T-cell malignancies, with clonal patterns showing either >97% or <3% TRBC1-positive events, or monophasic homogenous TRBC1-dim expression . Non-malignant T-cell subsets displayed the expected mixture of TRBC1-positive and TRBC1-negative subpopulations, except in a small percentage of cases with very small CD8-positive T-cell subsets .

What are the key considerations for designing ELISA assays using CT-1 antibodies?

When designing ELISA assays for CT-1 detection, researchers should consider:

  • Antibody pairing: Select complementary capture and detection antibodies that recognize different, non-competing epitopes. For example, Mouse Anti-Human Cardiotrophin-1/CT-1 Monoclonal Antibody (Catalog # MAB2603) functions as an ELISA capture antibody when paired with Mouse Anti-Human Cardiotrophin-1/CT-1 Monoclonal Antibody (Catalog # MAB2602) .

  • Standard curve preparation: For quantitative results, prepare a standard curve using recombinant human Cardiotrophin/CT-1 protein serially diluted 2-fold .

  • Detection system: A common approach involves:

    • Biotinylation of the detection antibody

    • Incubation with Streptavidin-HRP

    • Development with appropriate substrate solution

    • Termination of the reaction with stop solution

  • Optimization steps:

    • Determine optimal antibody dilutions for each assay component

    • Establish appropriate incubation times and temperatures

    • Validate assay performance with positive and negative controls

    • Assess intra- and inter-assay variability

The detection limit, dynamic range, and specificity of the ELISA should be thoroughly validated before application to experimental samples.

How can computational approaches enhance antibody specificity design?

Recent advances in computational modeling combined with high-throughput experimental data have enabled more precise design of antibodies with customized specificity profiles:

Biophysics-informed models can be trained on experimentally selected antibodies to associate distinct binding modes with potential ligands, enabling the prediction and generation of specific variants beyond those observed in experiments . This approach is particularly valuable when:

  • Very similar epitopes need to be discriminated

  • Target epitopes cannot be experimentally dissociated from other epitopes present in the selection process

Key methodological steps include:

  • Conducting phage display experiments for antibody selection against various ligand combinations

  • Building computational models to identify different binding modes associated with particular ligands

  • Using these models to design novel antibodies with either specific high affinity for particular target ligands or cross-specificity for multiple target ligands

The approach has successfully created antibodies with both specific and cross-specific binding properties, offering ways to mitigate experimental artifacts and biases in selection experiments . This computational design strategy has broad applicability beyond antibodies, providing tools for designing proteins with desired physical properties.

What are common issues in Western blot using CT-1 antibodies and how can they be resolved?

Western blot troubleshooting for CT-1 antibodies addresses several common challenges:

IssuePossible CausesSolutions
No bands detectedInsufficient protein, primary antibody concentration too low, inefficient transferIncrease sample loading, optimize antibody concentration, check transfer efficiency
Weak signalLow target protein abundance, insufficient antibody concentration, short exposure timeIncrease protein concentration, optimize antibody dilution, extend exposure time
Extra bandsCross-reactivity, protein degradation, non-specific bindingUse more specific antibody, add protease inhibitors, optimize blocking and washing
Smeared bandsOverloaded protein, protein degradation, incomplete denaturationReduce sample loading, add protease inhibitors, ensure complete denaturation
Diffuse/irregular bandsPost-translational modifications, glycosylationEnzymatic treatment of samples, use phosphatase inhibitors
Low transfer efficiencyIncorrect transfer conditions, protein size issuesOptimize transfer time/voltage, use appropriate membrane type

When analyzing CT-1 (molecular weight ~21.5 kDa), researchers should note that the actual observed molecular weight may differ from the theoretical weight due to post-translational modifications or the presence of fusion tags .

How can researchers optimize immunohistochemistry protocols for CT-1 antibodies?

Successful immunohistochemistry (IHC) using CT-1 antibodies requires careful optimization:

  • Fixation and tissue preparation:

    • Select appropriate fixatives based on target tissue and antibody compatibility

    • Optimize fixation time to preserve antigen integrity while maintaining tissue morphology

    • Consider antigen retrieval methods (heat-induced or enzymatic) if epitopes are masked

  • Blocking and antibody incubation:

    • Use sufficient blocking to reduce non-specific binding

    • Determine optimal primary antibody concentration through titration

    • Optimize incubation time and temperature (typically 1-2 hours at room temperature or overnight at 4°C)

  • Detection system selection:

    • Choose appropriate detection system based on sensitivity requirements

    • Consider signal amplification methods for low-abundance targets

    • Select visualization reagents compatible with downstream applications

  • Common issues and solutions:

    • Lack of staining: Insufficient primary antibody concentration, epitope masking requiring antigen retrieval

    • Inappropriate staining: Non-specific binding, excessive antibody concentration

    • High background: Insufficient blocking, excessive antibody concentration, inadequate washing

    • Tissue/cell morphology destruction: Excessive antigen retrieval, improper fixation

Each antibody may require specific protocol adjustments for optimal performance, emphasizing the need for proper controls and validation.

How can researchers validate the specificity of CT-1 antibodies?

Rigorous validation of CT-1 antibody specificity ensures reliable experimental results:

  • Positive and negative controls:

    • Use tissues or cell lines with known CT-1 expression patterns

    • Include knockout/knockdown samples when available

    • Test samples from multiple species if cross-reactivity claims exist

  • Antibody validation techniques:

    • Western blot analysis to confirm target protein molecular weight

    • Immunoprecipitation followed by mass spectrometry

    • Immunofluorescence co-localization with other validated markers

    • Comparison of staining patterns using antibodies targeting different epitopes

    • Pre-absorption with recombinant CT-1 protein to confirm specificity

  • Cross-reactivity assessment:

    • Test against related cytokines in the IL-6 family

    • Evaluate performance across multiple sample types and experimental conditions

    • Compare observed results with published expression patterns

  • Application-specific validation:

    • For flow cytometry: Compare with isotype controls and perform blocking experiments

    • For ELISA: Establish standard curves with recombinant protein and determine detection limits

    • For IHC: Compare staining patterns with literature and perform peptide competition assays

Recent approaches incorporate computational methods to design antibodies with customized specificity profiles, allowing researchers to generate antibodies that bind specifically to target ligands while excluding others .

What methodological approaches enhance antibody pair selection for sandwich assays?

Optimizing antibody pairs for CT-1 sandwich assays requires systematic evaluation:

  • Epitope mapping considerations:

    • Select antibodies targeting non-overlapping epitopes

    • Consider structural domains of CT-1 (N-terminal vs. C-terminal regions)

    • Evaluate spatial relationship between epitopes to prevent steric hindrance

  • Experimental determination of optimal pairs:

    • Test different capture-detection antibody combinations

    • Compare monoclonal-monoclonal vs. monoclonal-polyclonal pairs

    • Assess orientation effects (which antibody serves as capture vs. detection)

  • Performance optimization:

    • Determine optimal coating concentration for capture antibody

    • Titrate detection antibody to balance sensitivity and background

    • Optimize sample dilution and incubation conditions

  • Validation strategies:

    • Assess linearity across physiologically relevant concentration ranges

    • Determine limit of detection and quantification

    • Evaluate precision (intra- and inter-assay variability)

    • Test recovery using spiked samples

The example provided in the search results demonstrates a successful antibody pairing where Mouse Anti-Human Cardiotrophin/CT-1 Monoclonal Antibody (Catalog # MAB2603) functions as the capture antibody coated on a microplate, while biotinylated Mouse Anti-Human Cardiotrophin/CT-1 Monoclonal Antibody (Catalog # MAB2602) serves as the detection antibody .

How can researchers interpret T-cell clonality data using TRBC1 antibodies?

Interpreting T-cell clonality data using TRBC1 antibodies requires understanding normal T-cell receptor distribution patterns:

  • Normal (polyclonal) T-cell populations:

    • Show biphasic expression with approximately equal proportions of TRBC1-positive and TRBC1-negative cells

    • Both CD4+ and CD8+ T-cell subsets typically display this biphasic pattern

  • Clonal T-cell populations:

    • Exhibit monophasic TRBC1 expression patterns

    • May show either >97% or <3% TRBC1-positive events

    • Some cases display monophasic homogenous TRBC1-dim expression

  • Interpretation considerations:

    • All immunophenotypically abnormal T-cells from patients with T-cell malignancies showed monophasic TRBC1 expression (100% sensitivity)

    • Small CD8-positive T-cell subsets from some patients without T-cell malignancies (16%) may exhibit a monophasic pattern of uncertain significance

    • Additional immunophenotypic features should be considered alongside TRBC1 patterns

    • Correlation with clinical and molecular findings is recommended

  • Analysis workflow:

    • First identify T-cell populations using core T-cell markers

    • Assess CD4/CD8 distribution and identify any aberrant populations

    • Evaluate TRBC1 expression pattern within each population

    • Compare with age-matched normal reference patterns

This approach provides a rapid, flow cytometry-based method for T-cell clonality assessment that complements traditional molecular techniques .

What emerging technologies are improving CT-1 antibody development?

Recent advances in antibody technology are enhancing CT-1 research capabilities:

  • Computational design approaches:

    • Biophysics-informed models identify distinct binding modes associated with specific ligands

    • High-throughput sequencing combined with downstream computational analysis enables greater control over specificity profiles

    • Machine learning algorithms predict antibody properties from sequence data

  • High-throughput screening:

    • Phage display technologies allow screening of vast antibody libraries

    • Next-generation sequencing enables comprehensive analysis of selected populations

    • Deep mutational scanning provides insights into sequence-function relationships

  • Structure-guided design:

    • Cryo-EM and X-ray crystallography inform rational antibody engineering

    • Computational modeling predicts binding interactions and optimizes affinity

    • Fragment-based approaches identify optimal binding domains

  • Future directions:

    • Integration of experimental and computational approaches for antibody design

    • Development of antibodies targeting specific functional domains of CT-1

    • Creation of antibodies with tailored cross-reactivity profiles for comparative studies

    • Application of these methods to other members of the IL-6 family

These advancements promise to deliver CT-1 antibodies with enhanced specificity, sensitivity, and functionality for diverse research applications .

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