YHR145C is a yeast open reading frame (ORF) located on chromosome VIII. While its precise biological role remains uncharacterized in the provided sources, several contextual clues suggest potential research directions:
Genomic Association: YHR145C is adjacent to genes involved in stress response and ribosomal function (YHR131C, YHR145C-A) .
Structural Insights: Antibodies targeting yeast ribosomal proteins (e.g., eS7A in S. cerevisiae) have been critical in studying translation regulation under endoplasmic reticulum (ER) stress . YHR145C may participate in analogous pathways.
Ubiquitination Studies: Antibodies against yeast ribosomal proteins are used to investigate post-translational modifications like ubiquitination, which regulate translation during stress .
Though direct studies using YHR145C antibody are not detailed in the provided sources, its utility can be extrapolated from comparable reagents:
| Application | Protocol | Purpose |
|---|---|---|
| Western Blotting | SDS-PAGE separation → membrane transfer | Detect YHR145C protein expression under varying conditions (e.g., stress) |
| Immunofluorescence | Fixed yeast cell staining | Localize YHR145C to subcellular compartments (e.g., nucleus, cytoplasm) |
| Co-Immunoprecipitation | Protein complex isolation | Identify interaction partners of YHR145C |
| ELISA | Quantitative antigen detection | Measure YHR145C levels in lysates or purified samples |
Robust antibody validation is critical for reproducibility :
Specificity: Knockout (KO) yeast strains could confirm target specificity, as demonstrated in YCharOS initiatives .
Batch Consistency: Suppliers like Cusabio typically validate antibodies using immunoblotting against recombinant proteins .
Cross-Reactivity: Assays should confirm absence of off-target binding to homologous proteins in yeast.
STRING: 4932.YHR145C
YHR145C Antibody is a polyclonal antibody raised in rabbits against recombinant Saccharomyces cerevisiae (strain ATCC 204508/S288c, commonly known as Baker's yeast) YHR145C protein. It specifically reacts with Saccharomyces cerevisiae proteins and has been affinity-purified to ensure high specificity. This antibody is designed for research applications and targets the YHR145C protein (UniProt: O13537) .
The YHR145C Antibody should be stored at -20°C or -80°C upon receipt. The antibody is supplied in liquid form containing preservative (0.03% Proclin 300) and constituents (50% Glycerol, 0.01M PBS, pH 7.4) that help maintain stability. Importantly, researchers should avoid repeated freeze-thaw cycles as this can lead to protein denaturation and loss of antibody function. For projects requiring multiple uses, it is recommended to prepare small aliquots before freezing to minimize freeze-thaw damage .
The YHR145C Antibody has been tested and validated for ELISA (Enzyme-Linked Immunosorbent Assay) and Western Blot (WB) applications to ensure identification of the target antigen. These validation studies confirm the antibody's suitability for detecting the YHR145C protein in these specific applications. Researchers should note that optimization might be required when using this antibody in other immunological techniques not explicitly listed in the product specifications .
When optimizing Western Blot protocols with YHR145C Antibody, start with these methodological considerations:
Sample preparation: Ensure proper lysis of yeast cells using glass beads or enzymatic methods optimized for yeast cell walls
Protein loading: Begin with 20-50 μg of total protein per lane
Blocking: Use 5% non-fat dry milk or BSA in TBST (Tris-buffered saline with 0.1% Tween-20)
Primary antibody dilution: Start with a 1:1000 dilution and adjust based on signal intensity
Incubation: Overnight at 4°C for primary antibody is recommended for optimal binding
Controls: Include wild-type and YHR145C knockout samples when possible to validate specificity
This approach mirrors optimization strategies used for other yeast antibodies in similar experimental contexts .
For ELISA applications with YHR145C Antibody, implement these essential controls:
Positive control: Purified recombinant YHR145C protein
Negative control: Lysate from YHR145C deletion strain
Antibody specificity control: Pre-absorption of antibody with excess antigen
Secondary antibody control: Wells with no primary antibody to assess non-specific binding
Background control: Wells with no antibodies or antigen
These controls help distinguish specific signals from background and enable proper data interpretation, similar to control strategies employed in antibody binding studies for other organisms .
To determine the optimal dilution for YHR145C Antibody:
Perform a titration experiment using serial dilutions (e.g., 1:500, 1:1000, 1:2000, 1:5000)
For Western blots, analyze signal-to-noise ratio at each dilution
For ELISA, generate a standard curve with known concentrations of the target protein
Select the dilution that provides clear specific signal with minimal background
Validate the chosen dilution across multiple experimental replicates
This approach allows optimization while conserving antibody and follows standard immunoassay development principles seen in other antibody validation studies .
To minimize non-specific binding with YHR145C Antibody:
Increase blocking agent concentration (try 5-10% BSA or non-fat dry milk)
Add 0.1-0.5% Tween-20 to washing and antibody dilution buffers
Pre-absorb the antibody with lysate from non-target species
Reduce primary antibody concentration if high background persists
Increase washing duration and number of washes (minimum 3x10 minutes)
For yeast samples, pre-clear lysates by centrifugation to remove cell debris
These techniques mirror approaches used successfully with other polyclonal antibodies to improve signal specificity in complex samples .
If experiencing weak or absent signals with YHR145C Antibody, systematically investigate these potential causes:
Protein expression levels: YHR145C may be expressed at low levels under standard conditions
Protein extraction efficiency: Yeast cell walls can hinder complete protein extraction
Epitope masking: Post-translational modifications or protein interactions may block antibody binding
Antibody degradation: Improper storage or excessive freeze-thaw cycles may reduce activity
Procedural issues: Inadequate transfer in Western blots or inefficient coating in ELISA
Detection system sensitivity: Consider using enhanced chemiluminescence or amplification systems
This troubleshooting approach parallels methods used for other challenging antibody applications in yeast systems .
To assess potential cross-reactivity of YHR145C Antibody:
Perform sequence homology analysis to identify proteins with similar epitope regions
Test the antibody against recombinant proteins with structural similarity to YHR145C
Use knockout/knockdown validation to confirm signal specificity
Conduct immunoprecipitation followed by mass spectrometry to identify all bound proteins
Compare reactivity patterns across different yeast strains or related species
This multi-faceted approach provides rigorous validation similar to methods used for antibody characterization in other research contexts .
To address batch variation concerns with YHR145C Antibody:
Maintain internal reference standards to compare batch performance
Perform side-by-side validation when transitioning to a new lot
Document lot-specific optimal dilutions and performance characteristics
Consider pooling antibody from multiple production lots for long-term studies
Implement standardized quality control metrics for each new batch
Such standardization approaches are critical for maintaining experimental reproducibility, especially for made-to-order antibodies with potentially variable characteristics .
For enhanced detection of low-abundance YHR145C protein:
Implement targeted protein enrichment through subcellular fractionation
Use signal amplification systems like tyramide signal amplification in immunodetection
Apply proximity ligation assays for increased sensitivity
Consider sample concentration methods like immunoprecipitation before detection
Optimize cell growth conditions to increase target protein expression
Use more sensitive detection methods like ECL-Plus or fluorescent secondary antibodies
These approaches mirror advanced detection strategies used in studies of other low-abundance yeast proteins .
For multiplexed detection incorporating YHR145C Antibody:
Select compatible primary antibodies from different host species
Use secondary antibodies with distinct fluorophores or enzyme conjugates
Implement sequential detection protocols with thorough stripping between rounds
Consider microarray-based detection systems for high-throughput applications
Validate antibody performance in multiplex format compared to single-plex detection
Assess for potential interference between detection systems
This methodology aligns with contemporary approaches for studying multiple targets simultaneously in complex biological systems .
When designing experiments where maternal antibody interference is a concern:
Quantify pre-existing antibody levels in samples before immunization or challenge
Establish baseline correlations between maternal antibody titers and experimental outcomes
Include stratified analysis based on pre-existing antibody levels
Consider timing adjustments to allow for maternal antibody decay
Implement statistical approaches to control for maternal antibody as a covariate
This approach draws on principles used to address maternal antibody interference in immunization studies, which can be adapted to research with YHR145C Antibody in certain experimental contexts .
To implement active learning strategies with YHR145C Antibody:
Start with small-scale pilot experiments to identify optimal conditions
Use factorial design to simultaneously test multiple parameters
Implement iterative experimental approaches where each round informs the next
Apply machine learning algorithms to predict optimal conditions based on initial data
Utilize library-on-library approaches when screening multiple variants or conditions
These approaches have been shown to reduce experimental costs by up to 35% and accelerate research progress compared to traditional methods in antibody studies .
When faced with conflicting results across immunoassays:
Evaluate assay-specific limitations (sensitivity, specificity, dynamic range)
Consider epitope accessibility differences between methods (native vs. denatured)
Assess potential interference from sample components in each assay format
Implement orthogonal validation using non-antibody-based methods
Reconcile conflicts through comprehensive controls and method optimization
Document methodological details that might contribute to discrepancies
This systematic approach to data interpretation reflects best practices in antibody-based research where multiple detection methods may yield apparently contradictory results .