The identifier "SPCC757.13" follows the gene-naming convention for Schizosaccharomyces pombe (fission yeast), where:
SPCC: Prefix for systematic gene names in S. pombe.
757: Chromosomal locus identifier.
13: Specific open reading frame (ORF) designation.
Notably, SPCC757.11c (UniProt: O74921) is a documented fission yeast protein with available antibodies (e.g., Cusabio CSB-PA530434XA01SXV) . The absence of "SPCC757.13" in genomic databases (e.g., PomBase, UniProt) suggests it may represent:
A hypothetical or uncharacterized gene with no confirmed protein product.
A typographical error in the query (e.g., confusion with SPCC757.11c).
Antibody specificity remains a critical concern, particularly for uncharacterized proteins. For example:
Only 60% of commercial antibodies demonstrate adequate specificity in standardized assays .
Genetic validation (e.g., knockout strains) is often absent for fission yeast antibodies, raising reproducibility risks .
To advance research on SPCC757.13:
Confirm Gene Identity: Validate via genomic databases (PomBase) or RNA-seq data.
Generate Custom Antibodies: Collaborate with providers like Cusabio or Thermo Fisher using peptide immunogens .
Utilize Orthogonal Methods: Pair antibody-based assays with CRISPR-Cas9 knockouts or tagged protein systems .
KEGG: spo:SPCC757.13
STRING: 4896.SPCC757.13.1
SPCC757.13 antibody (Product Code: CSB-PA524909XA01SXV) is a polyclonal antibody raised in rabbits against the recombinant Schizosaccharomyces pombe (strain 972 / ATCC 24843) SPCC757.13 protein. This antibody specifically targets the SPCC757.13 protein in fission yeast (S. pombe) . The antibody was developed using an antigen affinity purification method to ensure high specificity against the target protein, which has a UniProt accession number of O74923 .
SPCC757.13 antibody has been validated for use in Western Blotting (WB) and Enzyme-Linked Immunosorbent Assay (ELISA) applications . When using this antibody for Western blotting, researchers should follow standard protocols for protein extraction from S. pombe, SDS-PAGE separation, and immunoblotting. Though not explicitly stated in the product documentation, antibodies of similar nature may potentially be used in immunoprecipitation or immunofluorescence studies following appropriate validation procedures.
For optimal stability and activity retention, SPCC757.13 antibody should be stored at either -20°C or -80°C upon receipt . It is crucial to avoid repeated freeze-thaw cycles as these can lead to protein denaturation and loss of antibody activity. For laboratories that frequently use this antibody, it is recommended to prepare small aliquots for single use to minimize freeze-thaw cycles. The antibody is supplied in a storage buffer containing 0.03% Proclin 300 as a preservative and 50% glycerol in 0.01M PBS at pH 7.4 .
When optimizing SPCC757.13 antibody for Western blotting experiments, researchers should perform a titration experiment to determine the optimal antibody concentration. While specific concentration recommendations for this antibody are not provided in the documentation, a general approach would be:
Prepare a dilution series (e.g., 1:500, 1:1000, 1:2000, 1:5000) of the antibody
Run identical protein samples on multiple Western blots
Process each blot with a different antibody dilution
Compare signal-to-noise ratios to determine optimal concentration
Based on similar antibodies, such as the Rabbit anti Dog Interleukin-13 antibody which is used at 0.1-2.0 μg/ml for Western blotting , researchers might start with a concentration range of 0.1-1.0 μg/ml for SPCC757.13 antibody.
For optimal detection of the SPCC757.13 protein from S. pombe using this antibody, consider these extraction methods:
Mechanical disruption: Using glass beads in a cell disruptor or bead beater in appropriate lysis buffer
Enzymatic digestion: Pre-treatment with zymolyase to digest the cell wall, followed by detergent-based lysis
Cryogenic grinding: Freezing cells in liquid nitrogen followed by grinding with mortar and pestle
The lysis buffer should contain protease inhibitors to prevent protein degradation and should be compatible with downstream applications. A typical buffer might include 50 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, and a protease inhibitor cocktail.
To validate the specificity of SPCC757.13 antibody in your experiments, consider implementing these approaches:
Positive and negative controls:
Positive control: Lysate from wild-type S. pombe expressing SPCC757.13
Negative control: Lysate from SPCC757.13 knockout strain (if available)
Peptide competition assay: Pre-incubate the antibody with excess purified SPCC757.13 protein or peptide before application to your samples. Specific binding should be blocked.
Multiple detection methods: Confirm results using different techniques (e.g., if using Western blot, also try immunofluorescence).
Size verification: The detected band should correspond to the predicted molecular weight of SPCC757.13 protein.
When performing Western blots with SPCC757.13 antibody, researchers might encounter various issues:
| Issue | Possible Causes | Solutions |
|---|---|---|
| No signal | Insufficient protein, inactive antibody, incomplete transfer | Increase protein loading, verify antibody activity with positive control, optimize transfer conditions |
| High background | Excessive antibody concentration, insufficient blocking, contaminated buffers | Dilute antibody further, increase blocking time, prepare fresh buffers |
| Multiple bands | Cross-reactivity, protein degradation, post-translational modifications | Optimize antibody dilution, add protease inhibitors during extraction, verify with knockout controls |
| Weak signal | Low antibody concentration, short exposure time, low protein expression | Increase antibody concentration, extend exposure time, enrich target protein |
When troubleshooting, make incremental changes to your protocol and document all modifications systematically.
Differentiating between specific and non-specific binding is crucial for accurate data interpretation:
Molecular weight verification: SPCC757.13-specific binding should appear at the predicted molecular weight of the protein.
Knockout/knockdown validation: Compare results with samples where SPCC757.13 has been deleted or suppressed. Specific signals should be absent or significantly reduced.
Peptide competition: Pre-incubating the antibody with purified SPCC757.13 protein should eliminate specific signals while non-specific signals may remain.
Cross-species reactivity assessment: Test the antibody against lysates from other species. Since SPCC757.13 antibody is specific to S. pombe, it should not recognize proteins from evolutionarily distant organisms unless they share highly conserved epitopes.
SPCC757.13 antibody can be leveraged for studying protein-protein interactions through several advanced techniques:
Co-immunoprecipitation (Co-IP): Use the antibody to pull down SPCC757.13 protein along with its interacting partners, which can then be identified by mass spectrometry or Western blotting.
Proximity Ligation Assay (PLA): Combine SPCC757.13 antibody with antibodies against putative interacting proteins to visualize interactions in situ with single-molecule resolution.
Chromatin Immunoprecipitation (ChIP): If SPCC757.13 interacts with DNA or chromatin-associated proteins, ChIP using this antibody can identify genomic binding sites.
Bimolecular Fluorescence Complementation (BiFC): While not directly using the antibody, this technique can complement antibody-based interaction studies by visualizing interactions in living cells.
This approach shares methodological similarities with studies of other proteins like SP17, which has been investigated for protein interactions in cancer research contexts .
While ELISA and Western blotting are the validated applications for SPCC757.13 antibody , researchers interested in using it for immunofluorescence microscopy should:
Perform validation experiments: Test different fixation methods (paraformaldehyde, methanol, acetone) and permeabilization techniques to determine optimal conditions.
Optimize antibody concentration: Usually starting with a higher concentration than used for Western blotting, then titrating down.
Include appropriate controls:
Primary antibody only (no secondary)
Secondary antibody only (no primary)
Pre-immune serum control
Peptide competition control
Consider immunofluorescence enhancement techniques:
Tyramide signal amplification
Quantum dot conjugated secondary antibodies
Confocal microscopy with spectral unmixing
Similar to how IL-13 antibodies have been optimized for flow cytometry , researchers should conduct careful validation experiments before using SPCC757.13 antibody for new applications.
When adapting standard ELISA protocols for SPCC757.13 antibody, consider the following modifications:
Coating concentration optimization: Titrate the coating antigen (recombinant SPCC757.13 protein) concentration, typically starting at 1-5 μg/ml.
Antibody dilution series: Create a dilution series of SPCC757.13 antibody (e.g., 1:500, 1:1000, 1:2000, 1:5000) to determine optimal concentration.
Buffer optimization:
Coating buffer: 50 mM carbonate-bicarbonate buffer (pH 9.6)
Blocking buffer: 3-5% BSA or non-fat dry milk in PBS
Washing buffer: PBS with 0.05% Tween-20 (PBST)
Antibody diluent: 1% BSA in PBST
Detection system selection: Choose appropriate HRP-conjugated secondary antibody against rabbit IgG, followed by colorimetric (TMB) or chemiluminescent substrate.
Standard curve generation: If quantifying SPCC757.13 protein, prepare a standard curve using purified recombinant protein.
When incorporating SPCC757.13 antibody into multiplexed assays where multiple targets are detected simultaneously, researchers should consider:
Cross-reactivity assessment: Verify that SPCC757.13 antibody does not cross-react with other proteins in your experimental system or with other antibodies in the multiplex panel.
Antibody isotype and host species compatibility: Ensure secondary detection reagents can distinguish between different primary antibodies in the panel. Using antibodies raised in different host species can facilitate this.
Signal separation strategies:
If using fluorescent detection, select fluorophores with minimal spectral overlap
If using chromogenic detection, choose enzyme-substrate combinations with distinguishable colors
Consider sequential detection protocols if cross-reactivity is a concern
Validation of multiplex results: Confirm findings from multiplexed assays with single-plex experiments to ensure accuracy.
Data normalization: Develop appropriate controls and normalization strategies to account for variations in antibody efficiency and target abundance.
This approach draws on methodology principles similar to those used in complex immunological studies, such as the evaluation of IL-13 in immunoregulatory contexts .