TY1B-PR2 Antibody

Shipped with Ice Packs
In Stock

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
TY1B-PR2 antibody; YPRWTy1-3 antibody; POL antibody; YPR158W-B antibody; P9584.3c antibody; Transposon Ty1-PR2 Gag-Pol polyprotein antibody; Gag-Pol-p199 antibody; TY1A-TY1B antibody; Transposon Ty1 TYA-TYB polyprotein antibody; p190) [Cleaved into: Capsid protein antibody; CA antibody; Gag-p45 antibody; p54); Ty1 protease antibody; PR antibody; EC 3.4.23.- antibody; Pol-p20 antibody; p23); Integrase antibody; IN antibody; Pol-p71 antibody; p84 antibody; p90); Reverse transcriptase/ribonuclease H antibody; RT antibody; RT-RH antibody; EC 2.7.7.49 antibody; EC 2.7.7.7 antibody; EC 3.1.26.4 antibody; Pol-p63 antibody; p60)] antibody
Target Names
TY1B-PR2
Uniprot No.

Target Background

Function
The Ty1B-PR2 Antibody targets the aspartyl protease (PR) of the Ty1 retrotransposon. The PR plays a critical role in the retrotransposon's life cycle by mediating the proteolytic cleavages of the Gag and Gag-Pol polyproteins after the assembly of the virus-like particle (VLP).

The Ty1 retrotransposon is a mobile genetic element found in the yeast Saccharomyces cerevisiae. It consists of a retroviral-like structure that contains a capsid protein (CA), an aspartyl protease (PR), a reverse transcriptase/ribonuclease H (RT), and an integrase (IN).

The CA forms the structural component of the VLP, encapsulating the retrotransposon's dimeric RNA genome. The VLP is assembled from trimer-clustered units and possesses holes in its capsid shell that allow for the diffusion of macromolecules. The CA also exhibits nucleocapsid-like chaperone activity, facilitating the annealing of primer tRNA(i)-Met to the multipartite primer-binding site (PBS), dimerization of Ty1 RNA, and the initiation of reverse transcription.

The RT is a multifunctional enzyme responsible for the conversion of the retro-elements' RNA genome into double-stranded DNA (dsDNA) within the VLP. It exhibits both DNA polymerase and ribonuclease H (RNase H) activities. The DNA polymerase activity copies both DNA and RNA templates, while the RNase H activity cleaves the RNA strand of RNA-DNA heteroduplexes during plus-strand synthesis and hydrolyzes RNA primers. This conversion results in a linear dsDNA copy of the retrotransposon, flanked by long terminal repeats (LTRs) at both ends.

The IN targets the VLP to the nucleus, where a subparticle preintegration complex (PIC) containing integrase and the newly synthesized dsDNA copy of the retrotransposon must traverse the nuclear membrane. Upon entering the nucleus, integrase integrates the dsDNA into the host genome.
Database Links
Subcellular Location
Cytoplasm. Nucleus.

Q&A

What is CASPR2 antibody and what cellular structures does it target?

CASPR2 antibody targets the contactin-associated protein-2, a transmembrane protein located adjacent to voltage-gated potassium channels (VGKC) on the cell membrane. This protein plays crucial roles in both the peripheral and central nervous systems. The antibody's pathogenic mechanism primarily involves blocking the interaction between CASPR2 and Contactin-2, disrupting normal neuronal function . Researchers should note that CASPR2 is expressed widely throughout the nervous system, which explains the diverse clinical manifestations observed in affected patients .

How does CASPR2 antibody contribute to autoimmune encephalitis?

CASPR2 antibody-mediated autoimmune encephalitis presents with diverse clinical manifestations due to the wide expression of CASPR2 in both central and peripheral nervous systems. The pathophysiological mechanism involves antibodies blocking the interaction between CASPR2 and Contactin-2, leading to neuronal dysfunction . Clinical presentations can range from limbic encephalitis (characterized by fever, epilepsy, amnesia, sleep disorders, hallucinations, psychosis, and behavioral disorders) to Morvan syndrome and peripheral nerve hyperexcitability . This diversity in presentation is rarely seen in other forms of encephalitis, making it a distinctive feature of CASPR2 antibody-associated conditions.

What detection methods are most reliable for CASPR2 antibody in clinical samples?

Cell-based assay (CBA) is the standard method for detecting CASPR2 antibodies in clinical samples. In research settings, it's crucial to test both serum and cerebrospinal fluid (CSF) samples, as positivity patterns may vary between the two. In one clinical study, 19 patients showed positive results only in blood samples (with titers ranging from 1:10 to 1:300), while six patients demonstrated positivity in both blood and CSF (with titers of 1:32) . Researchers should note that antibody titers should be carefully documented with proper dilution protocols (1:10, 1:20, 1:32, 1:100, etc.) to ensure accurate reporting and comparison across studies.

How should researchers design studies to differentiate between CASPR2 and other antibody-mediated encephalitides?

When designing differential studies, researchers must implement comprehensive immunological evaluations that test for multiple antibodies simultaneously, including NMDAR, LGI1, CASPR2, AMPAR, GABAB, and anti-neuronal antibodies (Hu, Yo, Ri, amphiphysin, CV2/CRMP5, and PNMA2) . Methodologically, it's essential to:

  • Collect both blood and CSF samples before immunotherapy initiation

  • Utilize standardized cell-based assays for antibody detection

  • Perform additional inflammatory markers assessment, including CSF white blood cell counts and protein levels

  • Document complete neurological examinations with standardized scoring systems

  • Conduct thorough electrophysiological studies to detect both central and peripheral involvement

These comprehensive assessments allow for more accurate differentiation between various antibody-mediated encephalitides, as symptom overlap can be significant among different autoantibody syndromes.

What methodological approaches are effective for studying epitope variation in CASPR2 antibodies?

Significant variation in clinical presentations of CASPR2 antibody-associated diseases is partly attributed to differences in epitope recognition. To study these variations effectively, researchers should employ:

  • Advanced immunoprecipitation techniques that can detect CASPR2-antibody binding sites

  • Domain-specific mutational analyses of CASPR2 protein

  • Competitive binding assays to determine epitope overlaps

  • Cross-reactivity studies with other neuronal surface proteins

Research has shown that epitope variation is likely responsible for the diverse clinical manifestations observed in patients . Additionally, overlapping epitopes between CASPR2 and LGI1 can result in expanded phenotypes beyond classical CASPR2 autoimmune encephalitis features . When analyzing these variations, researchers should consider the HLA association (particularly DRB1*11:01 in CASPR2), which differs from that seen in LGI1-associated conditions.

What are the methodological considerations for developing anti-idiotypic antibodies against pathologic antibodies like those in CASPR2-mediated conditions?

Development of anti-idiotypic antibodies requires careful methodological considerations:

  • First establish Epstein-Barr virus-transformed B-cell clones from patients with the specific autoantibody of interest

  • Select high-producing clones for mouse immunization and subsequent hybridoma establishment

  • Isolate and characterize monoclonal anti-idiotypic antibodies using enzyme-linked immunosorbent assay

  • Conduct cross-reactivity testing against autoantibodies from the same patient and from different individuals with similar or different specificities

  • Perform hemagglutination inhibition assays to confirm specificity

  • Conduct cross-competition experiments to identify idiotope recognition patterns

Research on anti-Pr2 cold autoantibodies has demonstrated that anti-idiotypic antibodies can recognize specific idiotypic determinants unique to a patient's antibody, located at or near the antigen-binding site . These methodologies can be adapted for studying CASPR2 antibodies for potential therapeutic applications or deeper understanding of the autoimmune response.

What clinical parameters should be monitored in longitudinal studies of CASPR2 antibody-positive patients?

Longitudinal studies of CASPR2 antibody-positive patients require systematic monitoring of multiple parameters:

Clinical ParameterAssessment FrequencyKey Indicators to Monitor
Antibody TitersBefore treatment and at 3-6 month intervalsChanges in serum/CSF titers correlating with clinical status
CSF InflammationBefore treatment and at 6-12 month intervalsWBC counts, protein levels, inflammatory markers
Neurological StatusMonthly during active disease, then quarterlyCognitive function, seizure frequency, peripheral nerve symptoms
Electrophysiological StudiesAt diagnosis and annuallyCentral and peripheral conduction changes
Imaging FindingsAt diagnosis and annuallyBrain/spine MRI changes, especially in limbic structures
Treatment ResponseAt each clinical visitResponse to immunotherapy, relapse indicators
ComorbiditiesAt each clinical visitTumor development, other autoimmune conditions

How should researchers design protocols to evaluate treatment efficacy in CASPR2 antibody-mediated autoimmune encephalitis?

Evidence-based treatment protocols for CASPR2 antibody-mediated conditions require rigorous methodological design:

  • Implement stratified randomization based on disease severity, antibody titers, and symptom patterns

  • Establish clear primary endpoints (e.g., modified Rankin Scale scores, seizure frequency) and secondary endpoints (antibody titer reduction, neuropsychological improvement)

  • Include both symptomatic treatment analysis and immunotherapy evaluation

  • Design adequate follow-up periods (minimum 12-24 months) to capture delayed responses and relapses

  • Consider crossover designs for ethical treatment delivery in rare conditions

  • Implement standardized adverse event reporting specific to immunomodulatory treatments

Existing research demonstrates good response to immunotherapy in CASPR2 antibody-associated encephalitis . Various therapeutic approaches (e.g., corticosteroids, intravenous immunoglobulin, plasma exchange) should be systematically compared for efficacy, tolerability, and long-term outcomes in these patients.

What methodological approaches can distinguish pathogenic from non-pathogenic CASPR2 antibodies?

Distinguishing pathogenic from non-pathogenic CASPR2 antibodies requires sophisticated experimental design:

  • Implement in vitro neuronal culture systems to test antibody-mediated effects on neuronal morphology and function

  • Develop animal models through passive transfer of purified antibodies from patients

  • Conduct epitope mapping to identify specific binding regions associated with pathogenicity

  • Perform competitive binding assays with known pathogenic antibodies

  • Correlate antibody characteristics (subclass, titer, binding properties) with clinical severity

Current research suggests that pathogenicity may be related to specific epitope recognition patterns, as evidenced by the diverse clinical manifestations observed with CASPR2 antibodies . The blocking action on CASPR2-Contactin-2 interaction appears central to pathogenesis, but additional mechanisms may exist that require further investigation.

How can researchers effectively integrate multi-omics approaches in studying CASPR2 antibody-mediated neurological disorders?

Multi-omics integration in CASPR2 antibody research requires structured methodological frameworks:

  • Combine genomic studies (particularly HLA typing, as DRB1*11:01 is implicated in CASPR2-associated conditions)

  • Implement comprehensive proteomics to identify additional biomarkers in serum/CSF

  • Conduct transcriptomics of B and T cells from patients to understand immune dysregulation

  • Apply metabolomics to identify potential metabolic signatures of disease activity

  • Develop integrated bioinformatics pipelines specific for neuroinflammatory data analysis

  • Implement longitudinal sampling protocols to capture disease dynamics

The integration of these approaches can provide insights into disease mechanisms beyond antibody-antigen interactions, potentially identifying new therapeutic targets and biomarkers for disease monitoring.

Quick Inquiry

Personal Email Detected
Please use an institutional or corporate email address for inquiries. Personal email accounts ( such as Gmail, Yahoo, and Outlook) are not accepted. *
© Copyright 2025 TheBiotek. All Rights Reserved.