YPK1 Antibody

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Description

Definition and Types

The YPK1 Antibody targets the yeast protein kinase Ypk1, a 99-kDa AGC kinase homologous to human SGK1 . Two primary types of antibodies are described in the literature:

  • Pan-specific antibodies: Recognize the full-length Ypk1 protein, suitable for detecting total Ypk1 levels in Western blotting or immunoprecipitation (IP) .

  • Phospho-specific antibodies: Detect Ypk1 phosphorylation at specific residues, including the activation loop (A-Loop), hydrophobic motif (HM), and Thr662 . These antibodies are critical for studying Ypk1 activation states under stress conditions.

Applications

YPK1 Antibodies are utilized in diverse experimental approaches:

ApplicationMethodKey FindingsCitations
Western BlottingPhospho-specific detectionMonitors Ypk1 activation (e.g., Thr662 phosphorylation under TORC2 signaling)
Immunoprecipitation (IP)Co-IP with interactorsIdentifies Ypk1 interactions (e.g., deacetylases Dac1/Dac7 in C. neoformans )
ImmunofluorescenceLocalization studiesVisualizes Ypk1 recruitment to the PM under stress conditions (e.g., hypotonic shock)

Role in Plasma Membrane Stress

  • Ypk1 localizes to the PM under stress, a process mediated by Slm1/2 proteins. Antibodies demonstrated that Ypk1 fails to localize in slm1Δ slm2Δ mutants .

  • Phospho-specific antibodies revealed TORC2-dependent activation of Ypk1 at Thr662, critical for sphingolipid biosynthesis and stress resistance .

Lipid Metabolism

  • Ypk1 regulates ceramide synthase activity, increasing sphingolipid production during stress. Antibodies confirmed Ypk1's interaction with ceramide synthase subunits .

  • Deletion of YPK1 leads to increased phosphatidylcholine (PC) deacylation, detectable via Western blotting with Ypk1 antibodies .

Pathogenicity in C. neoformans

  • Acetylation of Ypk1 at lysines 315/502 modulates its kinase activity. Antibodies (e.g., HA-tagged) demonstrated that deacetylation enhances fungal virulence .

Table 2: Key Research Insights

ProcessYpk1 FunctionAntibody UseCitations
PM stress responseLipid remodelingLocalization via IP/IF
Sphingolipid synthesisCeramide synthase activationCo-IP with ceramide synthase
Fungal pathogenicityCapsule formationAcetylation detection via IP

Product Specs

Buffer
Preservative: 0.03% Proclin 300
Constituents: 50% Glycerol, 0.01M PBS, pH 7.4
Form
Liquid
Lead Time
Made-to-order (14-16 weeks)
Synonyms
YPK1 antibody; SLI2 antibody; YKL126WSerine/threonine-protein kinase YPK1 antibody; EC 2.7.11.1 antibody; Sphingosine-like immunosuppressant resistant protein 2 antibody; Yeast protein kinase 1 antibody
Target Names
YPK1
Uniprot No.

Target Background

Function
Ypk1, a protein kinase, plays a crucial role in yeast cell proliferation. It participates in a signaling pathway essential for optimal cell wall integrity, operating in parallel with the PKC1-SLT2-dependent pathway. Ypk1 acts as a downstream kinase in the sphingolipid-mediated signaling pathway, and its phosphorylation is regulated by the intracellular sphingolipid concentration. Ypk1 collaborates with SLI1 in mediating resistance to myriocin (ISP-1), a sphingolipid biosynthesis inhibitor drug. Its kinase activity is vital for this resistance. Ypk1 is required for both receptor-mediated and fluid-phase endocytosis but is not essential for receptor phosphorylation or ubiquitination. It is necessary for the internalization of plasma membrane proteins carrying various internalization signals. Acting downstream of the PKH kinases, Ypk1 controls endocytosis by phosphorylating components of the endocytic machinery. Phosphorylation at residue Thr-504 in the activation loop is crucial for its activity. Ypk1 also phosphorylates and down-regulates FPK1, a flippase activator.
Gene References Into Functions
  1. Ypk1 activity requires stimulation by TORC2-mediated phosphorylation at Ser644 and Thr662. PMID: 28739659
  2. Ypk signaling has been identified as a pathway likely activated under conditions of sphingolipid depletion. Potential Ypk1 target proteins have been identified, providing a resource for ongoing mechanistic studies of cellular responses to sphingolipid depletion and the maintenance of sphingolipid homeostasis. PMID: 27717283
  3. Ypk1 and Plb1 interact to alter sphingolipid metabolism and upregulate PLB1 expression via Crz1. PMID: 25258318
  4. Research findings expand the scope of cellular processes regulated by Ypk1/2 to include the negative regulation of calcineurin and broaden the repertoire of mechanisms for membrane recruitment and activation of a protein kinase. PMID: 22307609
  5. Protein kinase Ypk1 phosphorylates regulatory proteins Orm1 and Orm2 to control sphingolipid homeostasis in Saccharomyces cerevisiae. PMID: 22080611
  6. Data suggest that Ypk1, and possibly the human Sgk1 kinase, affect fatty-acid uptake and thus energy homeostasis through regulating endocytosis. PMID: 20516150
  7. Research shows that Ypk1 phosphorylates and thereby down-regulates Fpk1. Furthermore, a complex sphingolipid counteracts the down-regulation of Fpk1 by Ypk1. PMID: 19966303

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Database Links

KEGG: sce:YKL126W

STRING: 4932.YKL126W

Protein Families
Protein kinase superfamily, AGC Ser/Thr protein kinase family, RAC subfamily
Subcellular Location
Cytoplasm. Cell membrane; Peripheral membrane protein; Cytoplasmic side. Note=Intracellular localization is regulated by the intracellular sphingolipid levels. During the yeast cell cycle, distributed both on the plasma membrane and in the cytosol. Greater accumulation was detected on the plasma membrane, such as in the budding area, a daughter cell and the neck region of the mother cell in the S phase, and the septum between a mother cell and a daughter cell in the G2 phase.

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